Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 BAI2 576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 32205741 32205741 + Missense_Mutation SNP T T G novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . BAI2-526 NM_001703 exon13 c.A2028C p.E676D CTTGTTTTCCGCA . 148 50 214 0 . 2 2 0 0 0 PMF1 11243 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 156209392 156209392 + Missense_Mutation SNP A A C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . PMF1-44 NM_001199654 exon5 c.A624C p.X208C TGAGTGAGGAGAC . 121 42 169 0 . 80 35 45 0 0 OR2T3 343173 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 248637175 248637175 + Missense_Mutation SNP A A C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . OR2T3-69 NM_001005495 exon1 c.A524C p.Q175P TTTGCCAGTCTAG . 430 119 467 1 . 0 0 0 0 0 CCDC3 83643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 13043327 13043327 + Missense_Mutation SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . CCDC3-91 NM_031455 exon1 c.C244A p.L82M CGCACAGCATCTC . 70 27 70 0 . 1 1 0 0 0 C10orf76 79591 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 103789497 103789497 + Silent SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . C10orf76-90 NM_024541 exon5 c.G312A p.L104L TGCGCACAGGGTC . 46 10 48 0 . 0 0 0 0 0 PSD 5662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 104173630 104173630 + Missense_Mutation SNP C C A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . PSD-272 NM_001270965 exon6 c.G1449T p.E483D CTCCTCCTCCCCT . 147 50 209 0 . 0 0 0 0 0 PIDD 55367 ucsc.edu 37 11 799396 799396 + Missense_Mutation SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . PIDD-205 NM_145886 exon16 c.G2644A p.D882N TGCTGTCCTGGTA . 47 4 64 0 . 13 13 0 0 0 MUC2 4583 bcgsc.ca 37 11 1092920 1092920 + Missense_Mutation SNP C C A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . MUC2-90 NM_002457 exon30 c.C4739A p.T1580N CACAGACCCCAAC . 322 15 383 7 . 0 0 0 0 0 PSMA1 5682 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 14536021 14536021 + Nonsense_Mutation SNP C C A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . PSMA1-92 NM_148976 exon6 c.G289T p.E97X AACACTCCTGACG . 113 41 100 1 . 79 69 10 0 0 INPPL1 3636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 71944164 71944164 + Missense_Mutation SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . INPPL1-660 NM_001567 exon17 c.G1997T p.G666V AGCGGGGTTCCCG . 158 66 219 0 . 10 5 5 0 0 MMP27 64066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 102563689 102563689 + Missense_Mutation SNP T T G novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . MMP27-229 NM_022122 exon9 c.A1277C p.D426A GCAGCATCAACAC . 157 48 178 0 . 0 0 0 0 0 PAFAH1B2 5049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 117038364 117038364 + Missense_Mutation SNP C C G novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . PAFAH1B2-204 NM_002572 exon6 c.C639G p.I213M ACTGATCATGCAG . 330 137 340 0 . 27 23 4 0 0 RECQL 5965 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 21623145 21623145 + Missense_Mutation SNP T T G novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . RECQL-228 NM_032941 exon16 c.A1933C p.K645Q CGATTTTTCTTTT . 427 263 243 0 . 54 11 43 0 0 HOXC10 3226 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 54382989 54382989 + Missense_Mutation SNP T T C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . HOXC10-91 NM_017409 exon2 c.T788C p.L263P ATTGGCTGACAGC . 226 47 148 1 . 71 48 23 0 0 NCKAP1L 3071 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 54905823 54905823 + Missense_Mutation SNP C C A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . NCKAP1L-93 NM_005337 exon9 c.C875A p.T292N ACATCACCCTTAT . 518 88 332 1 . 2 2 0 0 0 LRIG3 121227 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 59308047 59308047 + Missense_Mutation SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . LRIG3-229 NM_153377 exon2 c.G307A p.V103M CTCACACTTCTCG . 88 13 61 0 . 0 0 0 0 0 UBC 7316 ucsc.edu;bcgsc.ca 37 12 125397655 125397655 + Silent SNP C C A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . UBC-46 NM_021009 exon2 c.G663T p.L221L GAGTACCAGGTGC . 894 224 627 2 . 1614 1200 413 1 0 ATP5EP2 432369 ucsc.edu 37 13 28519461 28519461 + RNA SNP T T C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . ATP5EP2-1 . . . . CAAAAGTAGTGAG . 161 1 189 0 . 1263 1 1259 3 0 SLIRP 81892 ucsc.edu 37 14 78174462 78174462 + Missense_Mutation SNP C C A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . SLIRP-90 NM_001267864 exon1 c.C8A p.A3D TGGCGGCCTCAGC . 44 2 61 1 . 6 6 0 0 0 CLMN 79789 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 95670380 95670380 + Missense_Mutation SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . CLMN-90 NM_024734 exon9 c.C1306T p.P436S AGAAAGGATCCTT . 113 68 221 0 . 0 0 0 0 0 RMDN3 55177 bcgsc.ca 37 15 41043764 41043764 + Nonsense_Mutation SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . . NM_018145 exon4 c.C384A p.C128X CATGTGGCATCTG . 47 4 66 0 . 0 0 0 0 0 CSPG4 1464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 75968209 75968209 + Missense_Mutation SNP G G C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . CSPG4-229 NM_001897 exon10 c.C6651G p.F2217L CTCAAGGAAGCTC . 56 21 73 0 . 6 6 0 0 0 RHCG 51458 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 90030138 90030138 + Missense_Mutation SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . RHCG-226 NM_016321 exon2 c.C263T p.A88V CCCACGGCGCTGA . 357 159 379 0 . 0 0 0 0 0 STUB1 10273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 732019 732019 + Splice_Site SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . STUB1-226 NM_005861 exon5 c.613-1G>T . TTCACAGGACAAG . 276 156 220 0 . 324 100 223 0 1 GLG1 2734 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 74505165 74505165 + Missense_Mutation SNP A A C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . GLG1-136 NM_001145667 exon15 c.T2135G p.I712R GAGTCTATCTGGT . 227 60 191 0 . 11 9 2 0 0 C16orf46 123775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 81094972 81094972 + Nonsense_Mutation SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . C16orf46-90 NM_001100873 exon3 c.C982T p.Q328X GTTTCTGCAGAAG . 316 83 250 0 . 2 2 0 0 0 TRPV1 7442 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 3480482 3480482 + Missense_Mutation SNP A A G novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . TRPV1-23 NM_018727 exon12 c.T1718C p.I573T CTCAGGATCATCT . 257 125 213 0 . 0 0 0 0 0 NCOR1 9611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 15968952 15968952 + Missense_Mutation SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . NCOR1-229 NM_001190440 exon32 c.C4846A p.Q1616K GATACTGACTTGG . 279 72 222 0 . 6 5 1 0 0 KCNJ18 100134444 broad.mit.edu;bcgsc.ca 37 17 21318895 21318895 + Missense_Mutation SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . . NM_001194958 exon3 c.C241T p.R81W CGCTGGCGGTACA . 373 48 300 2 . 0 0 0 0 0 DNAH17 8632 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 76449535 76449535 + Silent SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . DNAH17-142 NM_173628 exon65 c.C10419A p.V3473V CTCGATGACATCC . 238 118 203 0 . 0 0 0 0 0 PTPRM 5797 hgsc.bcm.edu;bcgsc.ca 37 18 8314790 8314790 + Nonsense_Mutation SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . PTPRM-228 NM_001105244 exon21 c.C2854T p.R952X CATTCCCGAGTGA . 72 4 100 0 . 0 0 0 0 0 PRKCSH 5589 bcgsc.ca 37 19 11546941 11546941 + Missense_Mutation SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . PRKCSH-90 NM_001001329 exon2 c.G3T p.M1I TGAGATGCTGTTG . 54 4 75 1 . 110 109 1 0 0 KLK14 43847 broad.mit.edu 37 19 51584905 51584905 + Silent SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . KLK14-226 NM_022046 exon4 c.C144A p.T48T GCTCCGGGTGCAC . 94 4 71 0 . 0 0 0 0 0 MZF1 7593 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 59082699 59082699 + Missense_Mutation SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . MZF1-91 NM_198055 exon2 c.G58A p.V20I CCATGACAGGCCC . 117 39 127 0 . 3 3 0 0 0 MPHOSPH10 10199 broad.mit.edu 37 2 71376396 71376396 + Missense_Mutation SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . MPHOSPH10-93 NM_005791 exon10 c.C1709T p.T570I AAAAAACAGCTAC . 77 7 74 0 . 66 64 2 0 0 WDR54 84058 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 74651108 74651108 + Missense_Mutation SNP A A G novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . WDR54-90 NM_032118 exon6 c.A533G p.Q178R AGGGACAGGTGAG . 141 26 118 3 . 1 1 0 0 0 INO80D 54891 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 206921631 206921631 + Silent SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . INO80D-91 NM_017759 exon4 c.C255T p.I85I TTTCGGGATAAAG . 134 61 113 1 . 0 0 0 0 0 ERBB4 2066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 212248449 212248449 + Missense_Mutation SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . ERBB4-1461 NM_005235 exon28 c.G3818A p.R1273Q CGGATCCGCCCAT . 197 111 178 1 . 0 0 0 0 0 KIF1A 547 hgsc.bcm.edu 37 2 241696843 241696843 + Missense_Mutation SNP C C A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . KIF1A-91 NM_001244008 exon27 c.G2751T p.E917D CTCATCCTCCTCC . 263 15 138 0 . 1 1 0 0 0 SALL4 57167 bcgsc.ca 37 20 50406632 50406632 + Missense_Mutation SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . SALL4-92 NM_020436 exon2 c.G2390A p.S797N TTGATGCTTTCGG . 213 7 205 0 . 0 0 0 0 0 URB1 9875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 33727865 33727865 + Missense_Mutation SNP C C A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . . NM_014825 exon16 c.G1999T p.D667Y CCGTGTCCCGCAG . 43 31 77 0 . 0 0 0 0 0 TAB1 10454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 39814795 39814795 + Silent SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . TAB1-522 NM_153497 exon6 c.G609A p.L203L ACAGCTGAACGTG . 179 68 206 0 . 11 5 6 0 0 CCDC66 285331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 56627039 56627039 + Missense_Mutation SNP A A C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . CCDC66-135 NM_001141947 exon8 c.A978C p.Q326H GAAACAAGAACTG . 69 30 123 0 . 0 0 0 0 0 TRIM42 287015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 140401754 140401754 + Silent SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . TRIM42-227 NM_152616 exon2 c.G792A p.K264K CCTCAAGGCCTTC . 248 102 277 0 . 0 0 0 0 0 CDKL2 8999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 76532433 76532433 + Missense_Mutation SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . CDKL2-454 NM_003948 exon4 c.C476T p.T159I TAATCAGTATAAA . 125 41 201 0 . 2 2 0 0 0 SYNPO2 171024 hgsc.bcm.edu;bcgsc.ca 37 4 119947961 119947961 + Missense_Mutation SNP A A C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . SYNPO2-92 NM_001128934 exon3 c.A437C p.Q146P AGAACCAAAGAAG . 162 48 172 0 . 0 0 0 0 0 FAT4 79633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 126240999 126240999 + Missense_Mutation SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . FAT4-108 NM_024582 exon1 c.G3433A p.D1145N CAGCCAGATTTTG . 96 30 114 0 . 0 0 0 0 0 ADCY2 108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 7816984 7816984 + Silent SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . ADCY2-97 NM_020546 exon23 c.C2889T p.P963P GGAGCCCGAGCGG . 181 17 234 0 . 0 0 0 0 0 NUP155 9631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 37307409 37307409 + Missense_Mutation SNP A A G novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . NUP155-205 NM_153485 exon25 c.T2893C p.F965L CTTGGAAGGCCTG . 165 67 138 0 . 0 0 0 0 0 PAM 5066 hgsc.bcm.edu;broad.mit.edu 37 5 102237063 102237063 + Missense_Mutation SNP G G A novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . PAM-68 NM_138822 exon3 c.G214A p.D72N TAGTCCGATACAT . 63 4 98 0 . 0 0 0 0 0 RNF14 9604 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 141357939 141357939 + Missense_Mutation SNP G G T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . RNF14-226 NM_001201365 exon5 c.G378T p.W126C TGCCTGGATGCAA . 248 70 306 0 . 16 6 10 0 0 GEMIN5 25929 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 154278113 154278113 + Missense_Mutation SNP C C T rs144363013 TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . GEMIN5-228 NM_015465 exon23 c.G3232A p.V1078I CTCCTACGATGGC . 244 85 301 0 C|1.000;T|0.000 2 0 2 0 0 TULP1 7287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 35471606 35471606 + Missense_Mutation SNP G G C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . TULP1-92 NM_003322 exon12 c.C1132G p.R378G TGAAGCGGTTCCC . 44 20 36 0 . 0 0 0 0 0 COL12A1 1303 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 75884802 75884802 + Missense_Mutation SNP C C T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . COL12A1-142 NM_004370 exon13 c.G2662A p.A888T CAGACGCATACAA . 258 98 295 2 . 0 0 0 0 0 CNKSR3 154043 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 154732110 154732110 + Missense_Mutation SNP T T C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . CNKSR3-26 NM_173515 exon11 c.A1237G p.N413D GAATGTTGGTTTC . 163 60 180 0 . 51 31 20 0 0 MET 4233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 116397543 116397543 + Missense_Mutation SNP A A C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . MET-5874 NM_000245 exon7 c.A1915C p.I639L TCCATAATTATTT . 86 40 92 0 . 10 6 4 0 0 COPG2 26958 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 130337745 130337745 + Missense_Mutation SNP G G C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . . . . . . ATGGTAGCCATTT . 92 22 96 0 . 1 1 0 0 0 MFHAS1 9258 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 8643536 8643536 + Missense_Mutation SNP T T C novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . MFHAS1-90 NM_004225 exon3 c.A3155G p.Q1052R CGTCACTGGTTTC . 135 13 165 0 . 1 1 0 0 0 VSTM4 196740 hgsc.bcm.edu;bcgsc.ca 37 10 50311832 50311835 + Frame_Shift_Del DEL GGGC GGGC - novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 GGGC GGGC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . VSTM4-154 NM_144984 exon3 c.528_531del p.176_177del . . 130 34 201 0 . 0 0 0 0 0 CHRFAM7A 89832 bcgsc.ca 37 15 30665219 30665220 + Frame_Shift_Del DEL AT AT - novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 AT AT - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . CHRFAM7A-45 NM_139320 exon6 c.289_290del p.97_97del CCACTGATATCTG . 631 230 882 1 . 0 0 0 0 0 MAP4K1 11184 hgsc.bcm.edu;bcgsc.ca 37 19 39101749 39101755 + Frame_Shift_Del DEL ATGAAGT ATGAAGT - novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 ATGAAGT ATGAAGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . MAP4K1-980 NM_007181 exon11 c.746_752del p.249_251del . . 141 29 190 0 . 0 0 0 0 0 PRKCI 5584 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 170013708 170013708 + Frame_Shift_Del DEL A A - novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . PRKCI-1378 NM_002740 exon15 c.1427delA p.E476fs . . 85 42 118 0 . 0 0 0 0 0 SYNPO2 171024 hgsc.bcm.edu 37 4 119947965 119947967 + In_Frame_Del DEL AAG AAG - novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 AAG AAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . SYNPO2-92 NM_001128934 exon3 c.441_443del p.147_148del . . 165 32 171 0 . 0 0 0 0 0 LRRC37A 9884 broad.mit.edu 37 17 44410017 44410018 + Frame_Shift_Ins INS - - T novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . LRRC37A-22 NM_014834 exon10 c.4804_4805insT p.I1602fs TGCCTCATTGTGG . 412 111 349 2 . 0 0 0 0 0 C9orf89 84270 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 95874554 95874555 + Missense_Mutation DNP TG TG GT novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 TG TG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . C9orf89-90 NM_032310 exon5 c.G420T p.L140R GCTCCTGTACTGC . 56.0 23.0 70.0 0.0 . 0 0 0 0 0 RBM19 9904 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 114400219 114400220 + Splice_Site DNP TC TC CT novel TCGA-IA-A40U-01A-11D-A25F-10 TCGA-IA-A40U-10A-01D-A25F-10 TC TC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dd80d4b5-7825-4f99-b2e2-2559763b8661 384b9f8f-9231-4ab8-b556-8083ee51d965 . RBM19-95 NM_001146699 exon3 c.37-1G>A . CTTCATCTAGGAC . 130 91 104 1 . 0 0 0 0 0