Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CLSTN1	22883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	9809529	9809529	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CLSTN1-523	NM_001009566	exon7	c.C975T	p.H325H	GAGCCGGTGGAGG	.	74	32	89	0	.	0	0	0	0	0
PRDM2	7799	bcgsc.ca	37	1	14105124	14105124	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PRDM2-116	NM_015866	exon8	c.A834T	p.E278D	GGATGAAGAAGAA	.	103	5	85	0	.	0	0	0	0	0
IFFO2	126917	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	19282228	19282228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	.	NM_001136265	exon1	c.C599T	p.P200L	ATCTCCGGCGTGA	.	34	8	43	0	.	0	0	0	0	0
CSDE1	7812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	115277116	115277116	+	Missense_Mutation	SNP	T	T	A	rs200868850	alternate_allele	TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CSDE1-227	NM_001242891	exon8	c.A667T	p.M223L	ACAGCATAATGTT	.	295	34	389	0	.	4	3	0	0	1
POLR3C	10623	broad.mit.edu	37	1	145608259	145608259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	POLR3C-91	NM_006468	exon4	c.C438A	p.N146K	AAATGTGTTTGAT	.	89	4	102	0	.	4	4	0	0	0
ACP6	51205	broad.mit.edu	37	1	147142085	147142085	+	Missense_Mutation	SNP	A	A	C	rs201678741		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ACP6-94	NM_016361	exon1	c.T86G	p.V29G	AGGGCCACCCGCC	.	58	24	82	22	.	4	4	0	0	0
RPRD2	23248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150443766	150443766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	RPRD2-23	NM_015203	exon11	c.A2342C	p.E781A	CCCGAGAGCTCTC	.	109	43	127	0	.	0	0	0	0	0
RPTN	126638	broad.mit.edu	37	1	152128054	152128054	+	Silent	SNP	T	T	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	RPTN-68	NM_001122965	exon3	c.A1521G	p.Q507Q	GGAACTTTGGCCT	.	113	4	141	2	.	0	0	0	0	0
KDM5B	10765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	202701002	202701002	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	KDM5B-273	NM_006618	exon24	c.T3975G	p.Y1325X	GTGCAAATATGAG	.	70	21	61	0	.	4	4	0	0	0
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	208234136	208234136	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PLXNA2-92	NM_025179	exon13	c.T2633A	p.I878N	CCATGGATGGTCA	.	89	39	128	0	.	0	0	0	0	0
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	208234142	208234142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PLXNA2-92	NM_025179	exon13	c.T2627C	p.V876A	ATGGTCACTCGCG	.	84	38	121	0	.	0	0	0	0	0
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214557537	214557537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PTPN14-290	NM_005401	exon13	c.G1661A	p.S554N	GCCGTGCTGTAGT	.	50	20	61	0	.	0	0	0	0	0
GDI2	2665	hgsc.bcm.edu;bcgsc.ca	37	10	5855180	5855180	+	Silent	SNP	C	C	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	GDI2-90	NM_001115156	exon1	c.G42T	p.L14L	CACCGTCAGGCCG	.	50	24	66	0	.	0	0	0	0	0
ZNF33B	7582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	43088707	43088707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ZNF33B-90	NM_006955	exon5	c.A1691G	p.H564R	GACTTATGGCTAA	.	75	37	117	1	.	6	4	2	0	0
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	49986698	49986698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	WDFY4-22	NM_020945	exon18	c.C3218T	p.S1073F	CCTTCTCCTGCTG	.	26	9	25	0	.	0	0	0	0	0
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105795252	105795252	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	COL17A1-95	NM_000494	exon49	c.A3488C	p.E1163A	AGGAGCTCCTCAT	.	105	16	116	0	.	10	10	0	0	0
MUC2	4583	broad.mit.edu	37	11	1092630	1092630	+	Silent	SNP	T	T	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MUC2-90	NM_002457	exon30	c.T4449C	p.T1483T	CACCACTCCCAGC	.	134	29	157	17	.	0	0	0	0	0
SMPD1	6609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6412728	6412728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	SMPD1-90	NM_000543	exon2	c.G433A	p.V145M	GACATGGTGGAGG	.	52	19	55	0	.	15	10	5	0	0
PEX16	9409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	45936221	45936221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PEX16-93	NM_004813	exon6	c.C475T	p.P159S	TGCCAGGGCTGTG	.	59	21	51	0	.	115	63	52	0	0
OR5J2	282775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55944703	55944703	+	Missense_Mutation	SNP	G	G	A	rs143728764		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	OR5J2-115	NM_001005492	exon1	c.G610A	p.G204R	TTCTCCGGAGTCA	.	66	8	79	0	G|1.000;A|0.000	0	0	0	0	0
ITPR2	3709	broad.mit.edu	37	12	26714818	26714818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ITPR2-542	NM_002223	exon35	c.C4698A	p.S1566R	TGAATGGCTCTTC	.	106	3	158	0	.	0	0	0	0	0
DNAJC22	79962	bcgsc.ca	37	12	49745201	49745201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	DNAJC22-159	NM_024902	exon3	c.G942T	p.E314D	GACAGAGGAGGCA	.	120	5	132	0	.	16	16	0	0	0
R3HDM2	22864	broad.mit.edu	37	12	57663626	57663626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	R3HDM2-92	NM_014925	exon13	c.C1454A	p.P485H	GGGAGGGGCTGAC	.	81	5	76	1	.	0	0	0	0	0
DACH1	1602	broad.mit.edu	37	13	72440446	72440446	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	DACH1-135	NM_080759	exon1	c.C462T	p.S154S	ACTACTGCTGCTG	.	17	3	23	0	.	0	0	0	0	0
TMTC4	84899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	101287091	101287091	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	TMTC4-155	NM_032813	exon12	c.A1474C	p.S492R	GAGCACTTCTGAA	.	62	21	95	0	.	1	1	0	0	0
FBXO34	55030	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55817793	55817793	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	FBXO34-228	NM_017943	exon2	c.T685A	p.C229S	AAAAACTGCACAA	.	74	29	79	1	.	1	1	0	0	0
ACOT4	122970	broad.mit.edu	37	14	74060593	74060593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ACOT4-90	NM_152331	exon2	c.G645T	p.M215I	CTACATGCTTCAA	.	66	3	93	0	.	1	1	0	0	0
UNC79	57578	broad.mit.edu	37	14	94088804	94088804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	.	NM_020818	exon30	c.C4694T	p.T1565M	CACTGACGCTGAA	.	85	4	100	0	.	0	0	0	0	0
SPTBN5	51332	broad.mit.edu	37	15	42143073	42143073	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	SPTBN5-91	NM_016642	exon66	c.C10795T	p.R3599X	GGGCTCGCCACCA	.	48	3	69	1	.	26	25	0	0	1
MEGF11	84465	broad.mit.edu	37	15	66250030	66250030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MEGF11-69	NM_032445	exon10	c.G1142A	p.C381Y	GGCTGGCAGGTAC	.	95	4	97	0	.	0	0	0	0	0
WDR90	197335	broad.mit.edu	37	16	707223	707223	+	Splice_Site	SNP	T	T	G	rs78538490		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	WDR90-92	NM_145294	exon20	c.2473+2T>G	.	GGCAGGTTGGGCC	.	92	8	77	6	.	2	2	0	0	0
APOBR	55911	hgsc.bcm.edu	37	16	28507452	28507452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	APOBR-90	NM_018690	exon2	c.G1090T	p.G364W	GAGGCCGGGACAG	.	29	6	15	0	.	0	0	0	0	0
ZNF689	115509	broad.mit.edu	37	16	30616114	30616114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ZNF689-68	NM_138447	exon3	c.G974A	p.R325H	GAGAAGCGCCGCT	.	45	3	45	0	.	0	0	0	0	0
EDC4	23644	broad.mit.edu;bcgsc.ca	37	16	67913803	67913803	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	EDC4-92	NM_014329	exon16	c.C1872T	p.S624S	CAGCAGCAGTAGC	.	47	5	46	0	.	1	1	0	0	0
PDPR	55066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	70163023	70163023	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PDPR-135	NM_017990	exon6	c.A605T	p.N202I	CCCAAAATGGTGA	.	473	124	379	0	.	2	1	1	0	0
KARS	3735	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	75678300	75678300	+	Silent	SNP	A	A	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	KARS-92	NM_001130089	exon2	c.T27A	p.L9L	CCTAACAAGCCTT	.	96	54	87	0	.	1	1	0	0	0
ANKRD11	29123	broad.mit.edu	37	16	89345819	89345819	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ANKRD11-139	NM_001256183	exon9	c.C7131T	p.D2377D	GGCGTCGTCGTCC	.	31	3	23	0	.	6	6	0	0	0
TSR1	55720	broad.mit.edu	37	17	2237906	2237906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	TSR1-91	NM_018128	exon5	c.C841A	p.Q281K	GAGTCTGCCCTCG	.	142	4	106	0	.	0	0	0	0	0
BCL6B	255877	broad.mit.edu	37	17	6927003	6927003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	BCL6B-227	NM_181844	exon2	c.G13T	p.A5S	TCCCCCGCCGCCC	.	72	3	58	0	.	0	0	0	0	0
PHF23	79142	broad.mit.edu	37	17	7139965	7139965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PHF23-90	NM_024297	exon4	c.C281A	p.A94E	GACTTTGCTTTCT	.	66	3	51	0	.	6	6	0	0	0
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10358389	10358389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MYH4-102	NM_017533	exon21	c.C2304A	p.F768L	TTTGAAGAAAACC	.	115	31	104	0	.	0	0	0	0	0
ADPRM	56985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10608594	10608594	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	.	NM_020233	exon2	c.T351G	p.S117R	CTTCAGTAGAGAG	.	149	81	113	0	.	6	2	4	0	0
CCDC144A	9720	ucsc.edu;bcgsc.ca	37	17	16612498	16612498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	.	NM_014695	exon5	c.A1127G	p.Y376C	ATCCATACTATCA	.	869	213	783	4	.	0	0	0	0	0
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27014486	27014486	+	Silent	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	SUPT6H-93	NM_003170	exon23	c.G3003T	p.L1001L	CCTCCTGAAGGTA	.	44	10	45	0	.	0	0	0	0	0
CACNB1	782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37341119	37341119	+	Splice_Site	SNP	T	T	A	rs3211445		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CACNB1-154	NM_000723	exon9	c.649-2A>T	.	TCTGTCTGGGGGG	.	83	50	102	0	.	0	0	0	0	0
ERBB2	2064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37883597	37883597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ERBB2-9959	NM_004448	exon26	c.C3209T	p.A1070V	AGGAGGCCCCCAG	.	74	21	73	0	.	134	99	35	0	0
C17orf77	146723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72588562	72588562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	C17orf77-90	NM_152460	exon3	c.G377T	p.C126F	AGGTGTGCCCAAA	.	65	18	70	0	.	0	0	0	0	0
ZNF407	55628	broad.mit.edu	37	18	72775888	72775888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ZNF407-92	NM_017757	exon8	c.C6211T	p.R2071W	CAGGAGCGGGCAC	.	42	3	93	0	.	0	0	0	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2410353	2410353	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	TMPRSS9-91	NM_182973	exon8	c.G1113A	p.V371V	GATGGTGTGCGCT	.	72	3	70	0	.	0	0	0	0	0
XAB2	56949	broad.mit.edu	37	19	7684501	7684501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	XAB2-272	NM_020196	exon19	c.G2539A	p.A847T	ACACTGCGGCTGG	.	61	3	104	0	.	174	173	0	0	1
MARCH2	51257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8503277	8503277	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MARCH2-70	NM_001005415	exon5	c.C588T	p.S196S	GGTCTCCTTCCGC	.	62	22	87	0	.	5	1	4	0	0
FBL	2091	broad.mit.edu	37	19	40331279	40331279	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	FBL-91	NM_001436	exon2	c.C159T	p.G53G	TCCACCGCCGCCG	.	80	3	107	1	.	0	0	0	0	0
DNAJC5G	285126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27500675	27500675	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	DNAJC5G-226	NM_173650	exon4	c.T167A	p.L56Q	GGAAACTGGCCTT	.	79	21	108	0	.	0	0	0	0	0
RFX8	731220	bcgsc.ca	37	2	102018937	102018937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	.	NM_001145664	exon11	c.G1206T	p.R402S	CAGGATCCTGAGG	.	91	39	110	0	.	0	0	0	0	0
GPR39	2863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133403162	133403162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	GPR39-226	NM_001508	exon2	c.C1345A	p.Q449K	GGTTTTCAGGAGC	.	64	30	58	0	.	1	0	1	0	0
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152382499	152382499	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	NEB-145	NM_001271208	exon151	c.C22239T	p.V7413V	TTCCTTGACGTGA	.	102	25	126	0	.	0	0	0	0	0
AGPS	8540	broad.mit.edu;bcgsc.ca	37	2	178301756	178301756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	AGPS-92	NM_003659	exon5	c.G611T	p.R204L	TTGAGCGAATTCC	.	115	5	152	0	.	1	1	0	0	0
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	189867767	189867767	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	COL3A1-581	NM_000090	exon36	c.C2532T	p.P844P	AGGACCCCCTGGA	.	79	26	103	0	.	0	0	0	0	0
NBEAL1	65065	ucsc.edu;bcgsc.ca	37	2	204045155	204045155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	NBEAL1-92	NM_001114132	exon42	c.C6428T	p.A2143V	GGCAAGCTCTTAT	.	62	27	107	2	.	0	0	0	0	0
SNORA51	677831	ucsc.edu;bcgsc.ca	37	20	2635760	2635760	+	RNA	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	.	.	.	.	.	TGTATAGAAAGAG	.	22	9	22	0	.	0	0	0	0	0
ZNF335	63925	bcgsc.ca	37	20	44592465	44592465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ZNF335-94	NM_022095	exon8	c.G1267A	p.A423T	GGGCTGCGTTCTC	.	75	5	88	0	.	1	1	0	0	0
SYCP2	10388	bcgsc.ca	37	20	58475248	58475248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	SYCP2-525	NM_014258	exon17	c.C1349A	p.P450H	TTTGAAGGTTTAG	.	88	5	109	0	.	0	0	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011400	46011400	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	KRTAP10-6-90	NM_198688	exon1	c.C966T	p.S322S	ACCACAGGAGGGG	.	137	7	145	2	.	0	0	0	0	0
CLTCL1	8218	broad.mit.edu	37	22	19213138	19213138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CLTCL1-230	NM_001835	exon13	c.G1966T	p.G656C	AGGAGCCAAAGAA	.	55	9	47	12	.	0	0	0	0	0
MORC2	22880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	31345772	31345772	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MORC2-92	NM_014941	exon6	c.A97C	p.T33P	TCTGAGTAGACTC	.	59	23	82	0	.	1	1	0	0	0
RRP7A	27341	broad.mit.edu;bcgsc.ca	37	22	42910736	42910736	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	RRP7A-91	NM_015703	exon5	c.G510A	p.R170R	TTCCACCCTCAGG	.	141	14	191	0	.	89	86	2	1	0
PRKAR2A	5576	broad.mit.edu	37	3	48884918	48884918	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PRKAR2A-1108	NM_004157	exon1	c.A112C	p.T38P	GGCGGGTGAAGTA	.	84	22	99	16	.	0	0	0	0	0
GLT8D1	55830	bcgsc.ca	37	3	52731772	52731772	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	GLT8D1-90	NM_152932	exon4	c.C294A	p.Y98X	AACAATGTAGAAA	.	62	51	90	2	.	4	1	3	0	0
MAGI1	9223	broad.mit.edu	37	3	66023695	66023695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MAGI1-661	NM_001033057	exon1	c.G289A	p.V97I	AGGTGACGGCCTC	.	166	5	192	0	.	0	0	0	0	0
LRIG1	26018	broad.mit.edu	37	3	66433543	66433543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	LRIG1-230	NM_015541	exon15	c.G2354A	p.G785D	CTGCAGCCTGCTG	.	79	3	64	0	.	1	1	0	0	0
FBXO40	51725	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121345735	121345735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	FBXO40-273	NM_016298	exon4	c.C2108T	p.P703L	TCAGACCACGAGG	.	57	48	90	1	.	0	0	0	0	0
FAIM	55179	broad.mit.edu	37	3	138341182	138341182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	FAIM-227	NM_001033030	exon4	c.G366T	p.K122N	CAAGAAGTATATG	.	104	4	153	0	.	65	65	0	0	0
IQCJ-SCHIP1	100505385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	159606614	159606614	+	Silent	SNP	A	A	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	.	NM_001197113	exon9	c.A1428T	p.P476P	GCTGCCACACATG	.	81	63	92	0	.	0	0	0	0	0
FGFRL1	53834	broad.mit.edu;bcgsc.ca	37	4	1018104	1018104	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	FGFRL1-90	NM_001004356	exon6	c.A724C	p.T242P	GAGCGGACCCGTT	.	42	27	55	1	.	0	0	0	0	0
FAM193A	8603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2632748	2632748	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	FAM193A-93	NM_003704	exon3	c.T17A	p.L6H	GCCTGCTCCGGCA	.	60	18	76	0	.	0	0	0	0	0
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	54343069	54343069	+	Silent	SNP	T	T	C	rs151307935	alternate_allele	TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	LNX1-229	NM_001126328	exon9	c.A1743G	p.T581T	GGATGATGTTCTT	.	46	21	69	0	T|1.000;G|0.000	3	1	2	0	0
CEP135	9662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	56876035	56876035	+	Missense_Mutation	SNP	A	A	G	rs148279836		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CEP135-94	NM_025009	exon19	c.A2471G	p.Q824R	GACTGCAAGATGA	.	144	45	251	0	A|1.000;G|0.000	0	0	0	0	0
CEP135	9662	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	56885619	56885619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CEP135-94	NM_025009	exon23	c.C3113T	p.A1038V	TGTTGGCTACAAA	.	139	53	232	1	.	2	1	1	0	0
LRRC14B	389257	broad.mit.edu;bcgsc.ca	37	5	194906	194906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	LRRC14B-69	NM_001080478	exon2	c.C983T	p.A328V	ACTGTGCCCACGC	.	69	5	133	0	.	0	0	0	0	0
ANKHD1	54882	broad.mit.edu	37	5	139781730	139781730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ANKHD1-185	NM_017978	exon1	c.G178A	p.G60S	AGCAGCGGCGGCG	.	60	3	69	1	.	0	0	0	0	0
ECI2	10455	bcgsc.ca	37	6	4133832	4133832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ECI2-90	NM_206836	exon2	c.A164G	p.K55R	GGATCCTTTTTCA	.	129	5	164	1	.	5	5	0	0	0
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	38825504	38825504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	DNAH8-615	NM_001206927	exon42	c.A5944G	p.I1982V	AGAGATATTTTTG	.	111	53	130	0	.	0	0	0	0	0
FBXO5	26271	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	153293427	153293427	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	FBXO5-658	NM_012177	exon4	c.C1072T	p.R358X	TGTGTCGACTATA	.	86	32	135	2	.	1	1	0	0	0
EZR	7430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	159188095	159188095	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	EZR-70	NM_003379	exon13	c.C1612G	p.L538V	GGGACAGCTCGCT	.	95	32	89	0	.	377	203	174	0	0
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	TBP-91	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	41	5	47	0	.	3	3	0	0	0
DNAH11	8701	broad.mit.edu	37	7	21788203	21788203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	DNAH11-146	.	.	.	.	GGTGTCGCATCAG	.	69	3	99	1	.	0	0	0	0	0
ZNF273	10793	bcgsc.ca	37	7	64389216	64389216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ZNF273-90	NM_021148	exon4	c.C1510T	p.H504Y	ACTAAACATAAGA	.	69	10	79	0	.	5	5	0	0	0
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	70255844	70255844	+	Silent	SNP	A	A	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	AUTS2-92	NM_015570	exon19	c.A3642G	p.T1214T	TCCGACAGCAGCG	.	106	30	80	0	.	0	0	0	0	0
GTF2IRD2	84163	broad.mit.edu	37	7	74211898	74211898	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	GTF2IRD2-23	NM_173537	exon16	c.C1953G	p.I651M	ACAACAGATGGAC	.	434	85	365	0	.	16	13	2	0	1
NCF1C	654817	broad.mit.edu	37	7	74573095	74573095	+	RNA	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	.	.	.	.	.	GCGCCTGGCGGCG	.	81	19	89	0	.	61	61	0	0	0
NUP205	23165	broad.mit.edu	37	7	135307641	135307641	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	NUP205-207	NM_015135	exon31	c.C4447T	p.R1483X	GTCTGTCGAGATG	.	152	6	143	0	.	4	4	0	0	0
RP1L1	94137	broad.mit.edu	37	8	10470455	10470455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	RP1L1-139	NM_178857	exon4	c.C1153T	p.R385W	AGGGCCGGGGTCC	.	43	3	65	0	.	0	0	0	0	0
MTFR1	9650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	66617127	66617127	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MTFR1-91	NM_014637	exon5	c.A480C	p.K160N	TGCCAAAATTGTG	.	127	51	122	0	.	0	0	0	0	0
SULF1	23213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	70488224	70488224	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	SULF1-518	NM_001128205	exon6	c.C192G	p.N64K	CATGAACAAAACG	.	89	33	91	0	.	0	0	0	0	0
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	114326898	114326898	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CSMD3-1132	NM_052900	exon2	c.T303G	p.N101K	TATTCTATTTCGT	.	131	52	136	0	.	0	0	0	0	0
MLLT3	4300	broad.mit.edu	37	9	20414280	20414280	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MLLT3-660	NM_004529	exon5	c.C564T	p.S188S	ACTACTGCTGCTG	.	101	5	109	1	.	0	0	0	0	0
SIGMAR1	10280	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	34637563	34637563	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	SIGMAR1-90	NM_005866	exon1	c.G132C	p.Q44H	CGCCAACTGCGCT	.	33	7	37	0	.	4	4	0	0	0
TMOD1	7111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	100286582	100286582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	TMOD1-90	NM_001166116	exon2	c.G112A	p.D38N	GAGCTGGACCCTG	.	77	30	101	0	.	0	0	0	0	0
CTNNAL1	8727	broad.mit.edu	37	9	111775718	111775718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CTNNAL1-228	NM_003798	exon1	c.C5A	p.A2D	GAGGCGGCCATGG	.	55	7	47	2	.	0	0	0	0	0
PKN3	29941	broad.mit.edu	37	9	131469297	131469297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PKN3-521	NM_013355	exon5	c.G646A	p.A216T	GCACTGGCTGAGG	.	58	3	58	0	.	0	0	0	0	0
PRDM12	59335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	133556745	133556745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PRDM12-90	NM_021619	exon5	c.C793T	p.H265Y	CGCATCCACACGC	.	73	29	77	0	.	0	0	0	0	0
MAGED2	10916	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	54841947	54841947	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MAGED2-195	NM_201222	exon12	c.C1653T	p.A551A	TGGTGCCAGTACC	.	47	4	48	0	.	386	359	27	0	0
TCEAL4	79921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102841929	102841929	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	TCEAL4-130	NM_001006935	exon3	c.A326T	p.E109V	GGAGTGAAACAAG	.	126	104	153	1	.	150	10	140	0	0
DOCK11	139818	ucsc.edu;bcgsc.ca	37	X	117786022	117786022	+	Silent	SNP	T	T	C	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	DOCK11-93	NM_144658	exon42	c.T4677C	p.N1559N	TGCAAATAGTGAC	.	148	111	219	2	.	0	0	0	0	0
SLC25A5	292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118603720	118603720	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	SLC25A5-131	NM_001152	exon2	c.T208G	p.F70V	CTGTCCTTCTGGC	.	63	45	40	0	.	109	14	95	0	0
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	180885446	180885457	+	In_Frame_Del	DEL	TCCCAGGGTATG	TCCCAGGGTATG	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	TCCCAGGGTATG	TCCCAGGGTATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	KIAA1614-26	NM_020950	exon2	c.207_218del	p.69_73del	.	.	53	17	67	0	.	0	0	0	0	0
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	134738376	134738376	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	.	NM_001200049	exon11	c.1080delC	p.I360fs	.	.	82	39	129	0	.	0	0	0	0	0
C11orf57	55216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	111953315	111953315	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	C11orf57-155	NM_001082969	exon6	c.501delC	p.H167fs	.	.	209	79	256	0	.	0	0	0	0	0
VPS11	55823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118952015	118952015	+	Targeted_Region	DEL	C	C	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	VPS11-25	.	.	.	.	.	.	55	25	71	0	.	0	0	0	0	0
ARL6IP4	51329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123465766	123465770	+	Frame_Shift_Del	DEL	AGAGC	AGAGC	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	AGAGC	AGAGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ARL6IP4-90	NM_018694	exon2	c.449_453del	p.150_151del	.	.	144	31	155	0	.	0	0	0	0	0
NUFIP1	26747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	45563329	45563329	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	NUFIP1-90	NM_012345	exon1	c.243delC	p.F81fs	.	.	113	22	130	0	.	0	0	0	0	0
LMO7	4008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	76395479	76395497	+	Frame_Shift_Del	DEL	AAAGAAGATTCTACCACTT	AAAGAAGATTCTACCACTT	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	AAAGAAGATTCTACCACTT	AAAGAAGATTCTACCACTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	LMO7-586	NM_015842	exon11	c.1675_1693del	p.559_565del	.	.	104	28	161	0	.	0	0	0	0	0
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	58592566	58592570	+	Frame_Shift_Del	DEL	CAAGA	CAAGA	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	CAAGA	CAAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CNOT1-95	NM_206999	exon18	c.2139_2143del	p.713_715del	.	.	97	46	102	0	.	0	0	0	0	0
RFX8	731220	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	102018936	102018936	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	.	NM_001145664	exon11	c.1207delA	p.I403fs	.	.	89	38	107	0	.	0	0	0	0	0
RFX8	731220	hgsc.bcm.edu	37	2	102018936	102018937	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	.	NM_001145664	exon11	c.1206_1207del	p.402_403del	.	.	90	27	109	0	.	0	0	0	0	0
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	34765954	34765956	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	EPB41L1-93	NM_001258329	exon5	c.423_425del	p.141_142del	.	.	50	20	64	0	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885581	29885604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	NEFH-90	NM_021076	exon4	c.1952_1975del	p.651_659del	.	.	260	58	245	0	.	0	0	0	0	0
EIF4G1	1981	broad.mit.edu	37	3	184039744	184039746	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	EIF4G1-344	NM_001194946	exon11	c.1393_1395del	p.465_465del	GAAATGGAAGAAG	.	118	10	104	0	.	0	0	0	0	0
ZNF273	10793	broad.mit.edu;bcgsc.ca	37	7	64389208	64389214	+	Frame_Shift_Del	DEL	TTACTAA	TTACTAA	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	TTACTAA	TTACTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ZNF273-90	NM_021148	exon4	c.1502_1508del	p.501_503del	CAACTCTTACTAA	.	70	9	74	0	.	0	0	0	0	0
DPYS	1807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	105393497	105393499	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	DPYS-229	NM_001385	exon9	c.1487_1489del	p.496_497del	.	.	55	26	69	0	.	0	0	0	0	0
HRCT1	646962	broad.mit.edu	37	9	35906599	35906601	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	HRCT1-22	NM_001039792	exon1	c.315_317del	p.105_106del	CCACCACCCCCAC	.	12	5	9	0	.	0	0	0	0	0