Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
RPS6KA1	6195	ucsc.edu	37	1	26873742	26873742	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RPS6KA1-510	NM_001006665	exon3	c.G315A	p.L105L	GGTGCTGAAGAAG	.	61	3	76	0	.	23	15	7	1	0
TRIM62	55223	broad.mit.edu	37	1	33625315	33625315	+	Silent	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TRIM62-226	NM_018207	exon3	c.G735A	p.L245L	CCCAGCCAGGAAG	.	18	3	38	0	.	0	0	0	0	0
FHL3	2275	broad.mit.edu	37	1	38463363	38463363	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	FHL3-90	NM_004468	exon5	c.C681A	p.P227P	TACGATGGGGCGC	.	60	4	79	0	.	3	3	0	0	0
LPAR3	23566	broad.mit.edu	37	1	85331710	85331710	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	LPAR3-502	NM_012152	exon2	c.A94C	p.I32L	AAACAATCACAAG	.	317	7	364	1	.	0	0	0	0	0
CTTNBP2NL	55917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	112999075	112999075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CTTNBP2NL-92	NM_018704	exon6	c.A961G	p.R321G	GCAGAAAGAACCC	.	118	20	145	0	.	3	2	1	0	0
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145561841	145561841	+	Missense_Mutation	SNP	G	G	A	rs201815402	alternate_allele	TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ANKRD35-95	NM_144698	exon10	c.G1529A	p.R510Q	CTGCCCGGGGGGC	.	96	11	115	0	G|0.999;T|0.000	0	0	0	0	0
DENND4B	9909	hgsc.bcm.edu;ucsc.edu	37	1	153907297	153907297	+	Silent	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	DENND4B-69	NM_014856	exon18	c.G2712A	p.Q904Q	CTGCTGCTGCTGC	.	38	12	39	0	.	230	223	6	1	0
PEAR1	375033	broad.mit.edu	37	1	156879832	156879832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	PEAR1-71	NM_001080471	exon13	c.G1610A	p.C537Y	GTCGCTGTGACTG	.	22	3	30	0	.	5	4	1	0	0
DDR2	4921	broad.mit.edu	37	1	162688920	162688920	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	DDR2-1464	NM_001014796	exon4	c.G67C	p.A23P	GCAAAAGCTCAGG	.	61	3	92	0	.	0	0	0	0	0
ILDR2	387597	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	166890003	166890003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ILDR2-91	NM_199351	exon9	c.G1825A	p.D609N	GCAGGTCGCGGCC	.	31	7	36	0	.	0	0	0	0	0
TPR	7175	hgsc.bcm.edu;broad.mit.edu	37	1	186316562	186316562	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TPR-228	NM_003292	exon22	c.T2805C	p.D935D	AAGATCATCCACA	.	70	4	108	0	.	4	3	1	0	0
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	197072290	197072290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ASPM-615	NM_018136	exon18	c.T6091C	p.Y2031H	CACGATAAGCTGA	.	100	17	155	0	.	1	1	0	0	0
CR1L	1379	broad.mit.edu	37	1	207890832	207890832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CR1L-46	NM_175710	exon11	c.G1438T	p.A480S	CCTCCAGCTATCC	.	200	6	275	0	.	5	5	0	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CSGALNACT2-69	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	132	4	177	1	.	9	9	0	0	0
IFIT5	24138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	91177012	91177012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	IFIT5-90	NM_012420	exon2	c.A56G	p.H19R	AATGTCATTTTAC	.	125	16	148	0	.	3	3	0	0	0
XPNPEP1	7511	broad.mit.edu	37	10	111642221	111642221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	XPNPEP1-94	NM_001167604	exon10	c.C1010T	p.A337V	TAGCTGGCCTTGT	.	62	3	78	0	.	25	25	0	0	0
OR52B2	255725	broad.mit.edu	37	11	6191110	6191110	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	.	NM_001004052	exon1	c.C447T	p.A149A	GATGACGGCCAGA	.	55	4	80	0	.	0	0	0	0	0
OR10A5	144124	broad.mit.edu	37	11	6867462	6867462	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	OR10A5-71	NM_178168	exon1	c.G549A	p.P183P	CAGCCCGCCTGTG	.	115	4	119	0	.	0	0	0	0	0
USH1C	10083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	17542471	17542471	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	USH1C-91	NM_005709	exon14	c.T1156G	p.L386V	TAGGCAAGAGTAG	.	87	9	134	0	.	118	60	58	0	0
OR5M3	219482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56237348	56237348	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	OR5M3-70	NM_001004742	exon1	c.T626A	p.L209Q	ACAGTCAGGGAAT	.	173	20	206	0	.	0	0	0	0	0
OR5M3	219482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56237358	56237358	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	OR5M3-70	NM_001004742	exon1	c.A616T	p.T206S	AATATGTGAAGTT	.	172	20	205	0	.	0	0	0	0	0
SSRP1	6749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57100282	57100282	+	Silent	SNP	C	C	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SSRP1-228	NM_003146	exon6	c.G585T	p.T195T	ATCTCCCGTGGCC	.	72	15	98	0	.	44	32	12	0	0
FRMD8	83786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65168213	65168213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	FRMD8-227	NM_031904	exon9	c.C946T	p.R316C	GGCCTGCGCTTCC	.	82	13	76	0	.	5	4	1	0	0
MUS81	80198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65631192	65631192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MUS81-227	NM_025128	exon9	c.G961A	p.A321T	GACCCAGGTGAAG	.	110	21	132	0	.	4	2	2	0	0
TCIRG1	10312	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67811752	67811752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TCIRG1-227	NM_006019	exon9	c.G961A	p.E321K	ATTGCCGAGGCCT	.	55	7	33	0	.	34	33	1	0	0
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71948603	71948603	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	INPPL1-660	NM_001567	exon26	c.A3315G	p.P1105P	CTCACCAGCCAGC	.	72	17	93	0	.	56	40	16	0	0
ARAP1	116985	broad.mit.edu;ucsc.edu	37	11	72423580	72423580	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ARAP1-91	NM_001040118	exon6	c.G781C	p.V261L	CGCGCACGGCCCG	.	54	3	69	0	.	26	18	8	0	0
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	73796809	73796809	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	C2CD3-75	NM_015531	exon21	c.G3764C	p.C1255S	AAAGAACAGGCCA	.	132	19	140	0	.	4	2	2	0	0
C11orf30	56946	broad.mit.edu	37	11	76183839	76183839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	C11orf30-232	NM_020193	exon8	c.G1063T	p.V355L	ACAGCTGTGGTGT	.	106	3	124	0	.	1	1	0	0	0
MAML2	84441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	95825407	95825407	+	Silent	SNP	C	C	T	rs61901862		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MAML2-850	NM_032427	exon2	c.G1788A	p.Q596Q	CTGCTGCTGCTGC	.	95	11	90	0	C|0.250;T|0.750	230	223	6	1	0
YAP1	10413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102100555	102100555	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	YAP1-659	NM_001130145	exon9	c.G1399T	p.G467X	ATAGAAGGAGAGG	.	94	15	128	0	.	6	4	2	0	0
ARHGAP32	9743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	128933815	128933815	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ARHGAP32-231	NM_001142685	exon8	c.T825C	p.P275P	TTCGTCAGGGGCC	.	139	24	158	0	.	0	0	0	0	0
CLSTN3	9746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7302198	7302198	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CLSTN3-153	NM_014718	exon14	c.T2154C	p.D718D	CCTGGATCCCGAG	.	67	21	110	0	.	61	27	34	0	0
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	62954577	62954577	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MON2-514	NM_015026	exon26	c.T3716A	p.L1239Q	TGAATCTATGGTG	.	99	22	116	0	.	4	2	2	0	0
FZD10	11211	broad.mit.edu	37	12	130647553	130647553	+	Missense_Mutation	SNP	C	C	A	rs200800452		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	FZD10-658	NM_007197	exon1	c.C66A	p.S22R	CATCAGCTCCATG	.	82	11	76	3	.	0	0	0	0	0
MRPS31	10240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41323388	41323388	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MRPS31-226	NM_005830	exon6	c.T844A	p.F282I	TAGCAAATTCCAC	.	88	8	122	0	.	19	8	11	0	0
COL4A2	1284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	111117912	111117912	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	COL4A2-95	NM_001846	exon25	c.T1937A	p.F646Y	CAGGCTTCCTGGG	.	124	14	158	0	.	60	49	11	0	0
GTF2A1	2957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	81659105	81659105	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	GTF2A1-153	NM_015859	exon7	c.A691T	p.N231Y	TCTTATTTCCTGT	.	77	9	84	0	.	3	3	0	0	0
SETD3	84193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	99929881	99929881	+	Silent	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SETD3-514	NM_032233	exon3	c.G138A	p.E46E	TTCCCACTCTTTT	.	63	11	85	0	.	14	11	3	0	0
FAN1	22909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	31197838	31197838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	FAN1-90	NM_001146095	exon2	c.T972G	p.H324Q	ATCTCATAGTTCT	.	86	16	97	0	.	1	1	0	0	0
DMXL2	23312	broad.mit.edu	37	15	51828388	51828388	+	Silent	SNP	T	T	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	DMXL2-99	NM_001174117	exon12	c.A2289C	p.P763P	GAGAGTTGGAAGC	.	92	5	109	3	.	1	1	0	0	0
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75705130	75705130	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SIN3A-230	NM_001145358	exon5	c.C730T	p.Q244X	GGGGCTGAGGAGC	.	89	12	131	0	.	3	3	0	0	0
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	79350728	79350728	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RASGRF1-662	NM_001145648	exon3	c.T479A	p.L160H	TGCCGAAGCTGCT	.	44	4	46	0	.	0	0	0	0	0
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	9858489	9858489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	GRIN2A-349	NM_000833	exon14	c.A2912G	p.Q971R	TCCTTCTGCCGGT	.	84	27	96	0	.	0	0	0	0	0
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31373395	31373395	+	Splice_Site	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ITGAX-229	NM_000887	exon11	c.1087-1G>A	.	CTCCCAGGATGGC	.	74	10	94	0	.	0	0	0	0	0
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31383064	31383064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ITGAX-229	NM_000887	exon17	c.G2119A	p.G707R	GTCCTCGGGCTGA	.	54	5	59	0	.	34	33	0	0	1
CLUH	23277	bcgsc.ca	37	17	2601710	2601710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	.	NM_015229	exon10	c.G1327A	p.V443M	CCGCCACGTCCCC	.	108	5	106	0	.	26	26	0	0	0
MFAP4	4239	broad.mit.edu	37	17	19288499	19288499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MFAP4-514	NM_001198695	exon5	c.G505A	p.A169T	AGTCAGCGTACTT	.	109	5	125	0	.	106	106	0	0	0
PSMD11	5717	broad.mit.edu	37	17	30771555	30771555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	PSMD11-91	NM_002815	exon1	c.C14T	p.A5V	CGGCGGCGGTGGT	.	152	6	120	1	.	12	12	0	0	0
SRSF1	6426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	56083837	56083837	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SRSF1-290	NM_006924	exon2	c.C246A	p.Y82X	CAGACGGTACCCA	.	206	20	223	0	.	24	22	2	0	0
NETO1	81832	hgsc.bcm.edu;bcgsc.ca	37	18	70450990	70450990	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	NETO1-94	NM_001201465	exon7	c.T791A	p.L264H	ACCCCAAGACCCG	.	88	7	74	0	.	0	0	0	0	0
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	2226194	2226194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	DOT1L-132	NM_032482	exon27	c.C3674T	p.A1225V	GCTTGGCGGGAAG	.	68	12	63	0	.	0	0	0	0	0
SUGP1	57794	broad.mit.edu	37	19	19416711	19416711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SUGP1-91	NM_172231	exon4	c.A485G	p.Q162R	GGGGACTGGAAGA	.	47	3	67	0	.	7	7	0	0	0
PDCD2L	84306	broad.mit.edu	37	19	34895341	34895341	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	PDCD2L-91	NM_032346	exon1	c.G6T	p.A2A	CATGGCGGCCGTT	.	73	3	80	1	.	0	0	0	0	0
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38948847	38948847	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RYR1-100	NM_001042723	exon18	c.C2082G	p.Y694X	CCCCTACCCTGGG	.	46	8	55	0	.	0	0	0	0	0
PSG5	5673	hgsc.bcm.edu;broad.mit.edu	37	19	43679366	43679366	+	Splice_Site	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	PSG5-93	NM_002781	exon5	c.964+1G>A	.	CACTTACCAGAGA	.	114	12	153	0	.	0	0	0	0	0
NLRP8	126205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56487643	56487643	+	Silent	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	NLRP8-361	NM_176811	exon8	c.C2850T	p.N950N	GAAGAACCCTGAC	.	151	22	188	0	.	0	0	0	0	0
IFT172	26160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27702392	27702392	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	IFT172-154	NM_015662	exon10	c.A989T	p.Y330F	CCCACATACGTCA	.	97	12	71	0	.	4	4	0	0	0
TCF7L1	83439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	85361150	85361150	+	Silent	SNP	C	C	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TCF7L1-585	NM_031283	exon2	c.C261G	p.R87R	GAGGCGCCCGCAG	.	117	19	90	0	.	0	0	0	0	0
RNF103	7844	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	86832185	86832185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RNF103-226	NM_005667	exon4	c.T839C	p.I280T	ATGCCAATATCTG	.	133	8	133	0	.	6	6	0	0	0
MALL	7851	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	110873286	110873286	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MALL-92	NM_005434	exon1	c.C84T	p.F28F	GAAGGCGAAAGGG	.	178	22	133	0	.	3	3	0	0	0
SLC20A1	6574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113418053	113418053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SLC20A1-92	NM_005415	exon9	c.T1697C	p.L566P	TTCTACTCTATGG	.	176	29	211	0	.	18	12	6	0	0
INHBB	3625	hgsc.bcm.edu	37	2	121106693	121106693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	INHBB-93	NM_002193	exon2	c.G467A	p.R156Q	CCTCCCGGGTCCG	.	96	5	133	0	.	3	3	0	0	0
EEF1B2	1933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207027278	207027278	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	EEF1B2-227	NM_021121	exon6	c.A463T	p.M155L	ACAGATATGGCGA	.	209	28	206	0	.	769	640	128	1	0
COL4A3	1285	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228131751	228131751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	COL4A3-132	NM_000091	exon23	c.G1451T	p.G484V	TCCCAGGGCCTCC	.	74	14	56	1	.	1	0	1	0	0
RAB17	64284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238494741	238494741	+	Silent	SNP	C	C	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RAB17-227	NM_022449	exon2	c.G57T	p.V19V	CTTGAACACACGG	.	120	18	116	0	.	37	24	13	0	0
HDLBP	3069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242173343	242173343	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	HDLBP-290	NM_005336	exon24	c.C3180T	p.D1060D	TTTGGGGTCTACA	.	90	5	124	0	.	123	90	33	0	0
ACTR5	79913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37383625	37383625	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ACTR5-90	NM_024855	exon4	c.T801C	p.D267D	TCCTGATTATTAT	.	256	56	245	0	.	0	0	0	0	0
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47361658	47361658	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	PREX1-231	NM_020820	exon3	c.C318T	p.I106I	TTCCAGGATGTCT	.	79	22	130	0	.	4	4	0	0	0
GNAS	2778	broad.mit.edu	37	20	57429158	57429158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	GNAS-4767	NM_080425	exon1	c.G838A	p.A280T	CCAGGCGCCATCG	.	120	4	95	0	.	0	0	0	0	0
SLC25A1	6576	broad.mit.edu	37	22	19165669	19165669	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SLC25A1-90	NM_001256534	exon1	c.A200C	p.H67P	GGCGGGTGCGAGC	.	101	19	47	3	.	30	29	1	0	0
GSTT1	2952	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	24384206	24384206	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	GSTT1-91	NM_000853	exon1	c.T26A	p.L9Q	GACAGCAGGTCCA	.	84	22	86	0	.	0	0	0	0	0
CCDC117	150275	broad.mit.edu;bcgsc.ca	37	22	29176936	29176936	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CCDC117-91	NM_173510	exon3	c.T240A	p.D80E	TTTCAGTTGTCCA	.	102	10	149	1	.	0	0	0	0	0
SLC6A6	6533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	14508107	14508107	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SLC6A6-91	NM_003043	exon7	c.A816G	p.A272A	GGGCGCAGGCATC	.	64	9	60	0	.	4	4	0	0	0
TMEM115	11070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50396218	50396218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TMEM115-278	NM_007024	exon1	c.T277C	p.W93R	CCCCCCAGAGGGG	.	86	12	89	0	.	122	94	28	0	0
P2RY1	5028	hgsc.bcm.edu;broad.mit.edu	37	3	152554007	152554007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	P2RY1-500	NM_002563	exon1	c.A436G	p.S146G	TGCATCAGTGCCC	.	90	5	82	0	.	0	0	0	0	0
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1807653	1807653	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	FGFR3-9542	NM_001163213	exon13	c.T1828A	p.L610M	GAGTACTTGGCCT	.	55	17	57	0	.	0	0	0	0	0
SLC4A4	8671	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	72413388	72413388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SLC4A4-95	NM_001098484	exon20	c.T2645C	p.L882P	GAACCCTTGTGTT	.	82	7	109	0	.	1	1	0	0	0
ISL1	3670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	50680410	50680410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ISL1-515	NM_002202	exon2	c.A64G	p.N22D	TGCGGCAATCAGA	.	173	47	189	0	.	0	0	0	0	0
SEC24A	10802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	134060676	134060676	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SEC24A-68	NM_021982	exon23	c.G3174C	p.E1058D	GGATGAGAGTCCA	.	404	43	409	0	.	0	0	0	0	0
HNRNPA0	10949	broad.mit.edu	37	5	137088931	137088931	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	HNRNPA0-68	NM_006805	exon1	c.C825T	p.G275G	TCCACCGCCGCCG	.	87	7	74	1	.	95	94	1	0	0
CREBRF	153222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	172518246	172518246	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	.	NM_153607	exon4	c.A1064T	p.E355V	GTCCTGAAGAAGA	.	169	32	190	0	.	5	4	1	0	0
AGXT2L2	85007	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	177649897	177649897	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	AGXT2L2-91	NM_153373	exon7	c.A657G	p.G219G	CTGCCCTCCCACA	.	76	8	97	1	.	21	15	6	0	0
TBC1D7	51256	broad.mit.edu;ucsc.edu	37	6	13307840	13307840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TBC1D7-91	NM_001143965	exon6	c.T657A	p.S219R	CTGTAAACTGGAT	.	48	3	80	0	.	1	0	1	0	0
PBX2	5089	broad.mit.edu	37	6	32156280	32156280	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	PBX2-91	NM_002586	exon3	c.C297A	p.G99G	GCTGAGGCCTAGC	.	71	6	79	1	.	2	2	0	0	0
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	143090738	143090738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	HIVEP2-95	NM_006734	exon5	c.C5138A	p.P1713H	GTTCCAGGCCTAT	.	93	17	133	0	.	1	1	0	0	0
EIF2AK1	27102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6084205	6084205	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	EIF2AK1-408	NM_001134335	exon7	c.A718C	p.I240L	GCTGAATCACATG	.	41	6	31	0	.	0	0	0	0	0
CLCN1	1180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143049049	143049049	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CLCN1-156	NM_000083	exon23	c.G2958A	p.L986L	TGAACTGATCCTT	.	105	23	110	0	.	0	0	0	0	0
ANK1	286	ucsc.edu	37	8	41566447	41566447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ANK1-716	NM_001142446	exon17	c.A1946G	p.E649G	GCCACCTCCACCT	.	42	4	31	0	.	0	0	0	0	0
UBR5	51366	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	103287958	103287958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	UBR5-761	NM_015902	exon46	c.A6608G	p.D2203G	CCAACATCTTCCA	.	117	13	118	1	.	6	3	3	0	0
SNTB1	6641	broad.mit.edu	37	8	121706046	121706046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SNTB1-228	NM_021021	exon2	c.G674A	p.S225N	GAGGTGCTGCCCC	.	92	4	121	0	.	5	5	0	0	0
CTSL1	1514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	90344596	90344596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CTSL1-93	NM_145918	exon6	c.C730T	p.P244S	GTGGGGCCCATTT	.	81	16	108	0	.	886	759	126	0	1
RP2	6102	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	46696623	46696623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RP2-130	NM_006915	exon1	c.G88T	p.D30Y	AGCTGGGATCAGC	.	202	55	231	1	.	0	0	0	0	0
SYVN1	84447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64900251	64900251	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SYVN1-91	NM_172230	exon5	c.379delA	p.M127fs	.	.	49	11	76	0	.	0	0	0	0	0
ONECUT1	3175	broad.mit.edu	37	15	53081865	53081867	+	In_Frame_Del	DEL	GGT	GGT	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	GGT	GGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ONECUT1-68	NM_004498	exon1	c.215_217del	p.72_73del	GGGCCCGGTGGTG	.	6	2	20	0	.	0	0	0	0	0
ANKRD44	91526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	197878244	197878244	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ANKRD44-230	NM_001195144	exon18	c.1915delC	p.H639fs	.	.	134	31	141	0	.	0	0	0	0	0
NKD2	85409	broad.mit.edu	37	5	1038447	1038449	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	NKD2-226	NM_033120	exon10	c.1315_1317del	p.439_439del	CACGAGCACCACC	.	16	5	14	0	.	0	0	0	0	0
TRIO	7204	broad.mit.edu	37	5	14358383	14358385	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TRIO-562	NM_007118	exon12	c.2143_2145del	p.715_715del	TTTGGCCAGCAGC	.	233	7	184	0	.	0	0	0	0	0
SESN1	27244	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	109309823	109309823	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SESN1-227	NM_014454	exon9	c.1492delA	p.T498fs	.	.	56	13	51	0	.	0	0	0	0	0
RBAK-LOC389458	0	broad.mit.edu	37	7	5112027	5112029	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	TGC	TGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	.	NM_001204513	exon5	c.273_275del	p.91_92del	CGCTGTTGCTGCT	.	93	5	75	0	.	0	0	0	0	0
TRPM3	80036	broad.mit.edu;bcgsc.ca	37	9	73151135	73151136	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TRPM3-521	NM_001007471	exon25	c.4858_4859insA	p.E1620fs	TTCTCTCTGAGTT	.	129	15	148	0	.	0	0	0	0	0
COL1A1	1277	broad.mit.edu;bcgsc.ca	37	17	48277127	48277128	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	COL1A1-986	NM_000088	exon2	c.G284A	p.C95Y	TCGGGGCAGACGG	.	60	6	35	0	.	0	0	0	0	0