Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CASZ1	54897	broad.mit.edu	37	1	10714185	10714185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CASZ1-113	NM_001079843	exon11	c.C1929A	p.D643E	GAAGCCGTCCTTG	.	96	4	120	0	.	3	3	0	0	0
KIAA0754	643314	broad.mit.edu	37	1	39879055	39879055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_015038	exon1	c.A3118G	p.T1040A	GAGCCCACCTCCC	.	52	8	51	1	.	0	0	0	0	0
CTTNBP2NL	55917	broad.mit.edu	37	1	112999438	112999438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CTTNBP2NL-92	NM_018704	exon6	c.G1324T	p.A442S	TCATCAGCTAGCA	.	67	3	79	0	.	0	0	0	0	0
LRRC71	149499	broad.mit.edu	37	1	156897772	156897772	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	LRRC71-91	NM_144702	exon9	c.A972G	p.K324K	GGAAAAAGGGACA	.	329	5	313	3	.	0	0	0	0	0
C1orf112	55732	bcgsc.ca	37	1	169771829	169771829	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	C1orf112-90	NM_018186	exon4	c.A134T	p.N45I	GCCAAAATTTGGA	.	235	73	258	5	.	0	0	0	0	0
HMCN1	83872	broad.mit.edu	37	1	186023105	186023105	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	HMCN1-113	NM_031935	exon44	c.T6849G	p.N2283K	ATACAATCTGCAA	.	45	12	42	1	.	0	0	0	0	0
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204413511	204413511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PIK3C2B-1310	NM_002646	exon18	c.T2720C	p.I907T	GAGCCAATCCACT	.	43	23	54	0	.	1	0	1	0	0
HLX	3142	broad.mit.edu	37	1	221057861	221057861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	HLX-70	NM_021958	exon4	c.G1282A	p.G428S	AGCAGCGGCGGCG	.	96	3	84	0	.	1	1	0	0	0
TLR5	7100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223286235	223286235	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	TLR5-525	NM_003268	exon6	c.A139T	p.T47S	CAGTGGTGTTGAG	.	168	70	140	0	.	0	0	0	0	0
SIPA1L2	57568	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	232539257	232539257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	SIPA1L2-95	NM_020808	exon19	c.G4877A	p.G1626E	TGGGCCCCTTCCA	.	61	26	67	1	.	1	0	1	0	0
MAP3K8	1326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	30748425	30748425	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	MAP3K8-981	NM_001244134	exon7	c.T1268G	p.I423S	AGAACATTGCTGG	.	42	17	48	0	.	0	0	0	0	0
DNHD1	144132	hgsc.bcm.edu	37	11	6592937	6592937	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	DNHD1-24	NM_144666	exon43	c.G13983T	p.A4661A	ACATGCGGAGTGG	.	74	4	92	0	.	9	9	0	0	0
PACS1	55690	broad.mit.edu;bcgsc.ca	37	11	66008916	66008916	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PACS1-74	NM_018026	exon22	c.T2448A	p.Y816X	CCCATATGGGGAC	.	46	17	40	0	.	6	5	1	0	0
CLCF1	23529	broad.mit.edu;bcgsc.ca	37	11	67135057	67135057	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CLCF1-90	NM_013246	exon2	c.C57A	p.L19L	GTGCCAGAGCACC	.	46	15	41	1	.	20	5	15	0	0
CD163L1	283316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7528456	7528456	+	Silent	SNP	T	T	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CD163L1-100	NM_174941	exon10	c.A2526T	p.I842I	AAGAGATATGGCA	.	132	66	96	1	.	0	0	0	0	0
TAS2R30	259293	bcgsc.ca	37	12	11285978	11285978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_001097643	exon1	c.T866C	p.I289T	AGAAAAATCTGCT	.	315	25	218	3	.	0	0	0	0	0
ABCC9	10060	ucsc.edu;bcgsc.ca	37	12	22089587	22089587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ABCC9-96	NM_005691	exon1	c.A22G	p.N8D	TGTTGTTACCACA	.	309	76	220	2	.	0	0	0	0	0
DDX11	1663	bcgsc.ca	37	12	31237539	31237539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	DDX11-229	NM_030653	exon4	c.A416G	p.Q139R	GGAAGCAGCGAGA	.	436	201	321	8	.	4	4	0	0	0
KRT5	3852	broad.mit.edu	37	12	52913574	52913574	+	Silent	SNP	G	G	T	rs200658792	alternate_allele	TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	KRT5-90	NM_000424	exon1	c.C507A	p.R169R	CTGCTCGCGCTCC	.	179	4	159	2	G|0.999;A|0.000	0	0	0	0	0
METAP2	10988	broad.mit.edu	37	12	95867964	95867964	+	Silent	SNP	T	T	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	METAP2-90	NM_006838	exon1	c.T9G	p.G3G	GGCGGGTGTGGAG	.	126	43	107	24	.	4	4	0	0	0
VSIG10	54621	hgsc.bcm.edu	37	12	118506351	118506351	+	Silent	SNP	C	C	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_019086	exon8	c.G1398A	p.E466E	CTCCTCCTCTTCC	.	132	8	100	0	.	1	1	0	0	0
PARP4	143	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	25021252	25021252	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PARP4-94	NM_006437	exon26	c.C3187G	p.P1063A	CATCTGGATTGAG	.	193	55	208	2	.	0	0	0	0	0
PRMT5	10419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23397402	23397402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PRMT5-91	NM_006109	exon3	c.T248C	p.V83A	TTTCCCACAATTA	.	85	33	59	0	.	8	2	6	0	0
DIO2	1734	broad.mit.edu	37	14	80669247	80669247	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	DIO2-22	.	.	.	.	GCAAGGAGAAACG	.	74	3	62	0	.	0	0	0	0	0
NRDE2	55051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	90756895	90756895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_017970	exon10	c.G1899T	p.Q633H	CTGGAACTGAAGA	.	108	44	118	1	.	1	0	1	0	0
GOLGA6L6	727832	broad.mit.edu	37	15	20739884	20739884	+	Silent	SNP	C	C	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_001145004	exon8	c.G1866A	p.Q622Q	CTGCTCCTGTATC	.	14	3	9	0	.	0	0	0	0	0
BAHD1	22893	broad.mit.edu;bcgsc.ca	37	15	40751319	40751319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	BAHD1-90	NM_014952	exon2	c.G656A	p.R219Q	AGGAGCGGGAGCT	.	49	25	46	1	.	1	0	1	0	0
TP53BP1	7158	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43749148	43749148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	TP53BP1-294	NM_001141980	exon12	c.C1658T	p.T553M	GGTTCCGTATCCT	.	74	26	76	1	.	0	0	0	0	0
VPS13C	54832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	62211580	62211580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	VPS13C-92	NM_020821	exon58	c.C7546T	p.R2516W	GATTCCGTACATT	.	107	35	118	2	.	0	0	0	0	0
VPS13C	54832	broad.mit.edu	37	15	62219326	62219326	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	VPS13C-92	NM_020821	exon52	c.T6480C	p.P2160P	GAGAAAAGGGCAA	.	120	4	117	0	.	0	0	0	0	0
PARP6	56965	broad.mit.edu	37	15	72552951	72552951	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PARP6-522	NM_020214	exon9	c.C624A	p.L208L	GTTCATGAGGCGC	.	66	4	86	0	.	9	9	0	0	0
NPTN	27020	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	73884465	73884465	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	NPTN-90	NM_001161363	exon3	c.C453T	p.V151V	ACTGGTGACAATC	.	59	21	61	1	.	0	0	0	0	0
PRSS27	83886	broad.mit.edu	37	16	2762757	2762757	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PRSS27-91	NM_031948	exon6	c.T737G	p.V246G	CTGATCACCCCCG	.	97	30	69	24	.	4	4	0	0	0
ELMO3	79767	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67236173	67236173	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ELMO3-90	NM_024712	exon13	c.G1406C	p.R469P	TGCTCCGTGTTGG	.	105	54	90	1	.	57	10	47	0	0
PRMT7	54496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	68386313	68386313	+	Splice_Site	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PRMT7-90	NM_001184824	exon13	c.1425+1G>A	.	TTCAGGGTAGGCC	.	22	9	12	0	.	1	0	1	0	0
DHX38	9785	bcgsc.ca	37	16	72132887	72132887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	DHX38-227	NM_014003	exon6	c.G826A	p.E276K	TATAACGAGTGGG	.	116	56	77	2	.	1	0	1	0	0
MYH4	4622	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10369879	10369879	+	Missense_Mutation	SNP	C	C	T	rs148833814		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	MYH4-102	NM_017533	exon3	c.G184A	p.A62T	TCTTGGCTGTCAC	.	119	56	108	1	C|1.000;T|0.000	0	0	0	0	0
BLMH	642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28614937	28614937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	BLMH-91	NM_000386	exon4	c.C350T	p.A117V	ACAAAAGCACTCA	.	76	17	75	0	.	13	8	5	0	0
CACNB1	782	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37343149	37343149	+	Missense_Mutation	SNP	C	C	G	rs201083692	alternate_allele	TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CACNB1-154	NM_199248	exon5	c.G448C	p.V150L	CCTTCACCAGCCG	.	115	54	108	3	C|0.999;T|0.001	0	0	0	0	0
SLC25A39	51629	broad.mit.edu;bcgsc.ca	37	17	42399919	42399919	+	Silent	SNP	C	C	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	SLC25A39-91	NM_001143780	exon5	c.G192A	p.L64L	GGAGGGCACTGGG	.	116	64	92	2	.	1	1	0	0	0
NACA2	342538	ucsc.edu	37	17	59668318	59668318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	NACA2-91	NM_199290	exon1	c.G224A	p.R75K	CGTGCCCTCTTTT	.	189	1	121	0	.	1015	0	1015	0	0
AFG3L2	10939	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	12367020	12367020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	AFG3L2-90	NM_006796	exon5	c.T496C	p.S166P	TCCCGGATCTCTT	.	123	42	121	1	.	28	16	12	0	0
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9088827	9088827	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	MUC16-566	NM_024690	exon1	c.A2988G	p.V996V	GACCATTACAGTA	.	96	35	117	1	.	0	0	0	0	0
NKPD1	284353	broad.mit.edu	37	19	45655438	45655438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	NKPD1-68	NM_198478	exon4	c.C2257A	p.R753S	CCATGCGCCGGCG	.	40	4	57	2	.	0	0	0	0	0
ZNF677	342926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53740610	53740610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ZNF677-91	NM_182609	exon5	c.A1370G	p.K457R	TAAGGTTTTTCTC	.	80	23	65	0	.	0	0	0	0	0
LILRA5	353514	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54822787	54822787	+	Silent	SNP	A	A	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	LILRA5-91	NM_181879	exon5	c.T609G	p.P203P	GGTCACAGGGCCC	.	102	36	99	1	.	2	2	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_001144989	exon3	c.C968A	p.P323H	TCATAAGGTCTTT	.	115	8	87	0	G|0.500;T|0.500	1	1	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	107	8	81	0	C|0.500;T|0.500	1	1	0	0	0
ZNF814	730051	bcgsc.ca	37	19	58385873	58385873	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_001144989	exon3	c.A885G	p.K295K	TTCATGTTTTTTT	.	33	8	47	3	.	0	0	0	0	0
SLC30A3	7781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27480036	27480036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	SLC30A3-90	NM_003459	exon5	c.C763G	p.L255V	AGATGAGGATGGA	.	171	43	147	2	.	0	0	0	0	0
FBXO11	80204	broad.mit.edu;bcgsc.ca	37	2	48132850	48132850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	FBXO11-659	NM_001190274	exon1	c.G10C	p.V4L	CTCGGACGGAGTT	.	60	17	57	1	.	0	0	0	0	0
CSRNP3	80034	broad.mit.edu	37	2	166535409	166535409	+	Missense_Mutation	SNP	A	A	G	rs144629858		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CSRNP3-157	NM_001172173	exon7	c.A904G	p.M302V	AGTTCTATGGGCC	.	172	5	101	0	A|1.000;G|0.000	0	0	0	0	0
AGPS	8540	broad.mit.edu	37	2	178257705	178257705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	AGPS-92	NM_003659	exon1	c.C188T	p.A63V	GGAGAGCCGCGTC	.	136	4	106	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179424419	179424419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	TTN-636	NM_001267550	exon326	c.A86440T	p.N28814Y	TGGCATTTTCAAT	.	163	44	104	0	.	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26061818	26061818	+	RNA	SNP	G	G	C	rs112101451		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	.	.	.	.	TCTCCTGCTTAGA	.	149	4	116	1	G|0.994;C|0.006	0	0	0	0	0
AHCY	191	broad.mit.edu	37	20	32873357	32873357	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	AHCY-91	NM_000687	exon9	c.C1056A	p.G352G	GGGGTGGCCCATG	.	85	7	89	2	.	117	105	12	0	0
MROH8	140699	broad.mit.edu;bcgsc.ca	37	20	35772168	35772168	+	Silent	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	.	.	.	.	AGAGCTGTGGAGC	.	173	8	151	0	.	2	2	0	0	0
TRAPPC10	7109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45502876	45502876	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	TRAPPC10-92	NM_003274	exon14	c.G1931A	p.W644X	CGGAGTGGCTTAC	.	67	32	121	0	.	1	0	1	0	0
CELSR1	9620	broad.mit.edu	37	22	46763676	46763676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CELSR1-525	NM_014246	exon28	c.C8029A	p.R2677S	CATCGCGGTTCAC	.	116	6	126	1	.	6	6	0	0	0
EDEM1	9695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	5229984	5229984	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	EDEM1-137	NM_014674	exon1	c.C494G	p.P165R	GTGGGCCCGACCG	.	54	32	44	0	.	0	0	0	0	0
ACY1	95	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52022828	52022828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ACY1-154	NM_001198895	exon14	c.C1048A	p.R350S	GACAACCGCTATA	.	138	65	85	0	.	876	284	592	0	0
NT5DC2	64943	broad.mit.edu	37	3	52558884	52558884	+	Missense_Mutation	SNP	G	G	A	rs201813711		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	NT5DC2-514	NM_001134231	exon13	c.C1361T	p.A454V	GACTCCGCGTCCT	.	82	4	91	0	G|0.999;A|0.001	43	43	0	0	0
MCM2	4171	broad.mit.edu	37	3	127323557	127323557	+	Missense_Mutation	SNP	C	C	T	rs201721106		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	MCM2-230	NM_004526	exon3	c.C343T	p.R115W	GCAGAGCGGGCCA	.	103	4	70	0	C|0.999;T|0.000	0	0	0	0	0
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	129281631	129281631	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PLXND1-90	NM_015103	exon27	c.T4824C	p.L1608L	CCCACCAAGGTCG	.	50	25	25	0	.	0	0	0	0	0
TNIK	23043	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	170846580	170846580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	TNIK-550	NM_015028	exon16	c.C1696T	p.P566S	ACCTTGGGGGCAG	.	108	45	57	2	.	2	0	2	0	0
SEL1L3	23231	broad.mit.edu	37	4	25760681	25760681	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_015187	exon21	c.A2965T	p.N989Y	CCAGGTTAAAAAA	.	108	13	101	5	.	2	2	0	0	0
SLC30A5	64924	bcgsc.ca	37	5	68413165	68413165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	SLC30A5-226	NM_022902	exon11	c.A1381G	p.M461V	TTAGTCATGGGAC	.	134	62	112	4	.	5	3	2	0	0
GPR150	285601	broad.mit.edu	37	5	94957233	94957233	+	Silent	SNP	A	A	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	GPR150-90	NM_199243	exon1	c.A1254C	p.P418P	GCGCCCACCCCCT	.	64	6	56	2	.	1	1	0	0	0
KCNN2	3781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	113740442	113740442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	KCNN2-92	NM_021614	exon3	c.A890G	p.N297S	ACTTCAATACACG	.	65	18	80	1	.	0	0	0	0	0
HIST1H1E	3008	broad.mit.edu	37	6	26157244	26157244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	HIST1H1E-154	NM_005321	exon1	c.C626T	p.A209V	AGGCAGCCAAGCC	.	156	6	161	0	.	0	0	0	0	0
MDGA1	266727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	37622225	37622225	+	Silent	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	MDGA1-91	NM_153487	exon6	c.C807A	p.P269P	GGGGAGGGGATCA	.	79	34	115	0	.	0	0	0	0	0
FILIP1	27145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	76023889	76023889	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	FILIP1-94	NM_015687	exon5	c.A1659T	p.K553N	TAAAAGTTTCTTA	.	121	41	133	2	.	0	0	0	0	0
USP45	85015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	99894085	99894085	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	USP45-637	NM_001080481	exon14	c.A1563G	p.R521R	ACTGGATCTGAAC	.	60	23	69	0	.	0	0	0	0	0
ENPP1	5167	bcgsc.ca	37	6	132211512	132211512	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ENPP1-95	NM_006208	exon25	c.A2639T	p.E880V	TTGAAGAATTGTT	.	168	46	168	1	.	4	4	0	0	0
COPS6	10980	ucsc.edu;bcgsc.ca	37	7	99686962	99686962	+	Silent	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	COPS6-658	NM_006833	exon2	c.T126C	p.A42A	CGTCGCTCTCCAT	.	76	33	70	2	.	203	111	92	0	0
ZNF425	155054	broad.mit.edu	37	7	148800800	148800800	+	Silent	SNP	A	A	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ZNF425-136	NM_001001661	exon4	c.T2163C	p.P721P	AGAAAAAGGCCTC	.	101	3	46	0	.	1	1	0	0	0
TGS1	96764	broad.mit.edu;bcgsc.ca	37	8	56686242	56686242	+	Missense_Mutation	SNP	G	G	A	rs140849025	alternate_allele	TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	TGS1-227	NM_024831	exon1	c.G65A	p.C22Y	AGGATTGTAAGAT	.	47	38	67	2	G|1.000;T|0.000	0	0	0	0	0
PRDM14	63978	broad.mit.edu	37	8	70981965	70981965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PRDM14-93	NM_024504	exon2	c.C131A	p.A44D	ACGGTGGCCAGGC	.	63	5	84	1	.	0	0	0	0	0
STOML2	30968	broad.mit.edu	37	9	35101777	35101777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	STOML2-90	NM_013442	exon5	c.C374T	p.A125V	GTGACGGCATACT	.	107	4	97	0	.	79	79	0	0	0
CREB3	10488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35736272	35736272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CREB3-90	NM_006368	exon8	c.T745C	p.S249P	TACTCCTCTGACA	.	55	23	75	0	.	48	21	27	0	0
IL17RB	55540	broad.mit.edu	37	3	53889347	53889347	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	IL17RB-229	NM_018725	exon6	c.508delA	p.K170fs	AAATATAAAAAAA	.	288	9	212	0	.	0	0	0	0	0
ENPP1	5167	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	132211511	132211511	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ENPP1-95	NM_006208	exon25	c.2638delG	p.E880fs	.	.	167	46	165	0	.	0	0	0	0	0
ENPP1	5167	hgsc.bcm.edu	37	6	132211511	132211512	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ENPP1-95	NM_006208	exon25	c.2638_2639del	p.880_880del	.	.	167	33	167	0	.	0	0	0	0	0
DSCAML1	57453	broad.mit.edu	37	11	117389379	117389380	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	DSCAML1-159	NM_020693	exon7	c.1492_1493insC	p.T498fs	TGACCGTGGGGGG	.	32	8	35	0	.	0	0	0	0	0
F13A1	2162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	6222265	6222266	+	Splice_Site	INS	-	-	CACA	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	F13A1-519	NM_000129	exon9	c.1112+1->TGTG	.	.	.	56	22	55	0	.	0	0	0	0	0
NOL7	51406	broad.mit.edu	37	6	13620991	13620992	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	NOL7-90	NM_016167	exon8	c.706_707insA	p.Q236fs	GGAATCCAAAAAA	.	307	0	301	0	.	0	0	0	0	0
FLNC	2318	broad.mit.edu	37	7	128483884	128483885	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	FLNC-141	NM_001127487	exon19	c.2846_2847insG	p.D949fs	GCGGGGACCCTGT	.	206	6	121	0	.	0	0	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_001144989	exon3	c.G959A	p.G320E	CTTTTCCCAGTGT	.	99.0	7.0	74.0	0.0	.	0	0	0	0	0