Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
LYSMD1	388695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151134570	151134570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	LYSMD1-90	NM_212551	exon2	c.C187A	p.Q63K	TAATCTGTTCCAT	.	71	27	69	0	.	0	0	0	0	0
SHC1	6464	broad.mit.edu	37	1	154938022	154938022	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	SHC1-847	NM_001130040	exon11	c.T1623G	p.G541G	CACCACACCCTCA	.	145	11	152	6	.	1	1	0	0	0
TOR1AIP2	163590	hgsc.bcm.edu;broad.mit.edu	37	1	179815212	179815212	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	TOR1AIP2-69	NM_001199260	exon7	c.T1407G	p.L469L	TTAGAAAAGGCAC	.	110	6	118	0	.	2	2	0	0	0
ITIH5	80760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7621949	7621949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	ITIH5-92	NM_001001851	exon9	c.G1187A	p.R396Q	ACGCTCCGGTCTC	.	60	33	75	0	.	0	0	0	0	0
PIPSL	266971	broad.mit.edu;bcgsc.ca	37	10	95720900	95720900	+	RNA	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	.	.	.	.	.	TTGAAACGAAAGG	.	325	29	272	0	.	0	0	0	0	0
CPXM2	119587	broad.mit.edu	37	10	125651141	125651141	+	Missense_Mutation	SNP	G	G	T	rs201350090		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	CPXM2-92	NM_198148	exon1	c.C35A	p.A12D	ACCAGGGCCAGCG	.	31	5	33	0	.	1	1	0	0	0
MUC2	4583	bcgsc.ca	37	11	1092884	1092884	+	Missense_Mutation	SNP	C	C	T	rs201415503		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MUC2-90	NM_002457	exon30	c.C4703T	p.T1568M	CCACCACGGTGAC	.	177	8	162	0	.	0	0	0	0	0
ACY3	91703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67413212	67413212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	ACY3-90	NM_080658	exon4	c.C383T	p.A128V	GACTTCGCGATTA	.	203	12	195	0	.	0	0	0	0	0
POU2AF1	5450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111228192	111228192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	POU2AF1-658	NM_006235	exon4	c.C434T	p.P145L	AGTGGCGGAGAGG	.	338	131	370	1	.	1	1	0	0	0
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113846045	113846045	+	Missense_Mutation	SNP	G	G	A	rs200513646		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	HTR3A-90	NM_000869	exon1	c.G16A	p.A6T	AAGCTCGCTATGC	.	26	8	53	0	.	1	0	1	0	0
FLT1	2321	broad.mit.edu	37	13	29008265	29008265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	FLT1-1406	NM_002019	exon5	c.A606G	p.I202M	AAGCCCTATTTCT	.	88	3	161	0	.	3	3	0	0	0
POSTN	10631	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	38166281	38166281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	POSTN-516	NM_006475	exon3	c.G239T	p.C80F	CCAGGGCAACATT	.	116	59	222	2	.	3	3	0	0	0
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43748237	43748237	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	TP53BP1-294	NM_001141980	exon12	c.C2569T	p.Q857X	GGGGCTGCTGCAA	.	70	26	74	0	.	2	2	0	0	0
NOX5	79400	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	69339166	69339166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	NOX5-136	NM_024505	exon11	c.C1652A	p.S551Y	AGGGCTCTGAGAT	.	88	28	75	1	.	0	0	0	0	0
VASN	114990	broad.mit.edu	37	16	4432543	4432543	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	VASN-68	NM_138440	exon2	c.A1665C	p.T555T	CCATACACCCCCA	.	120	28	58	6	.	3	3	0	0	0
ABCC1	4363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	16177358	16177358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	ABCC1-94	NM_004996	exon17	c.G2251A	p.E751K	GACCTGGAAATCC	.	253	52	209	0	.	9	4	5	0	0
RLTPR	146206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67683208	67683208	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	RLTPR-67	NM_001013838	exon19	c.C1740T	p.D580D	GGACGACGATTGT	.	48	20	40	0	.	0	0	0	0	0
MYO18A	399687	broad.mit.edu	37	17	27437604	27437604	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MYO18A-22	NM_078471	exon18	c.C2937A	p.G979G	GGCACTGCCTGCG	.	42	9	24	1	.	2	2	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305800	39305800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	KRTAP4-5-90	NM_033188	exon1	c.A220T	p.S74C	AGCAGCTGGATTC	.	72	18	58	0	.	0	0	0	0	0
SP6	80320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45925061	45925061	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	SP6-91	NM_001258248	exon2	c.C735T	p.P245P	CCCATCGGGCCCA	.	83	31	101	0	.	0	0	0	0	0
TANC2	26115	ucsc.edu;bcgsc.ca	37	17	61432303	61432303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	TANC2-24	NM_025185	exon12	c.A1912G	p.T638A	AATACTACATTTG	.	257	104	214	4	.	0	0	0	0	0
DNAI2	64446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72306227	72306227	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	DNAI2-92	NM_023036	exon11	c.G1419T	p.L473L	CCAGCTGGGGACA	.	93	32	96	0	.	0	0	0	0	0
RAB40B	10966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80617514	80617514	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	RAB40B-227	NM_006822	exon4	c.A284T	p.D95V	GCAATGTCATAGA	.	128	51	138	0	.	23	12	11	0	0
MBD1	4152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	47802004	47802004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MBD1-228	NM_001204137	exon8	c.G758A	p.R253H	CACTGGCGCCTGA	.	224	74	239	0	.	20	11	9	0	0
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	41076606	41076606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	SPTBN4-94	NM_020971	exon33	c.C7291T	p.L2431F	CGCGAGCTCGACG	.	74	27	68	0	.	0	0	0	0	0
ZNF577	84765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52376124	52376124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	ZNF577-91	NM_032679	exon7	c.G1119T	p.E373D	AGTTTTCTCATGT	.	84	40	67	0	.	0	0	0	0	0
FAM71E2	284418	broad.mit.edu	37	19	55869916	55869916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	.	NM_001145402	exon9	c.G2320A	p.E774K	TCATCTCGCCCCA	.	69	7	68	0	.	0	0	0	0	0
THUMPD2	80745	hgsc.bcm.edu	37	2	39964200	39964200	+	Splice_Site	SNP	C	C	G	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	THUMPD2-91	NM_025264	exon11	c.1188-1G>C	.	AGCACTCTGTGAC	.	94	8	92	0	.	0	0	0	0	0
PPM1B	5495	broad.mit.edu	37	2	44429130	44429130	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	PPM1B-227	NM_001033556	exon2	c.A792G	p.V264V	TGAGGTATCTGAT	.	162	5	145	0	.	18	18	0	0	0
TSGA10	80705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	99634687	99634687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	TSGA10-91	NM_182911	exon19	c.G2048A	p.R683Q	AGGCCTCGGTCAG	.	87	30	80	0	.	0	0	0	0	0
EPC2	26122	broad.mit.edu;bcgsc.ca	37	2	149519453	149519453	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	EPC2-137	NM_015630	exon5	c.A769T	p.T257S	GAGAAAACAAAAC	.	294	9	304	0	.	2	2	0	0	0
NCOA6	23054	bcgsc.ca	37	20	33337464	33337464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	NCOA6-292	NM_014071	exon9	c.A2534G	p.H845R	GAGAAGTGGTTTC	.	234	94	237	6	.	4	4	0	0	0
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34778710	34778710	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	EPB41L1-93	NM_001258329	exon12	c.C1291G	p.L431V	CGCAGCCTTGATG	.	38	12	45	0	.	0	0	0	0	0
FAM83D	81610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37570604	37570604	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	FAM83D-93	NM_030919	exon2	c.G576A	p.V192V	GTAGGTGATTGCA	.	151	53	155	0	.	0	0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195511447	195511447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MUC4-90	NM_018406	exon2	c.C7004T	p.T2335M	AGAGGCGTGGTGT	.	260	5	341	0	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195512690	195512690	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MUC4-90	NM_018406	exon2	c.C5761G	p.L1921V	CAGGAAGAGAGGT	.	410	31	762	22	.	0	0	0	0	0
BBS12	166379	ucsc.edu	37	4	123664664	123664664	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	BBS12-92	NM_001178007	exon3	c.T1617C	p.G539G	TGGAGGTGGTGCA	.	80	2	123	0	.	7	6	1	0	0
TMEM184C	55751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	148545023	148545023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	TMEM184C-90	NM_018241	exon2	c.C162G	p.I54M	TGGAATCTTTTTG	.	65	37	114	0	.	7	0	7	0	0
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	66456396	66456396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MAST4-647	NM_001164664	exon27	c.C3761A	p.S1254Y	AGAAATCCAAGAA	.	76	25	89	0	.	4	0	4	0	0
EPB41L4A	64097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	111506049	111506049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	EPB41L4A-91	NM_022140	exon20	c.C1688T	p.P563L	CCGGATGGATCCA	.	68	22	71	0	.	6	3	3	0	0
APC	324	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	112154880	112154880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	APC-12026	NM_001127510	exon11	c.G1151T	p.S384I	GGGCCAGTGCAGC	.	165	66	178	1	.	0	0	0	0	0
LAMA4	3910	broad.mit.edu	37	6	112463434	112463434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	LAMA4-140	NM_001105206	exon20	c.A2554G	p.M852V	CATCCATACTGGT	.	121	4	122	0	.	0	0	0	0	0
NMBR	4829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	142396953	142396953	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	NMBR-946	NM_002511	exon3	c.C1005T	p.F335F	GCTGTTGAAATGC	.	138	8	149	0	.	0	0	0	0	0
HGC6.3	0	bcgsc.ca	37	6	168377105	168377105	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	.	NM_001129895	exon1	c.C228T	p.V76V	GGAGAAGACAGTG	.	370	20	434	11	.	0	0	0	0	0
MEOX2	4223	hgsc.bcm.edu	37	7	15725800	15725800	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MEOX2-515	NM_005924	exon1	c.C228T	p.H76H	GTGATGGTGGTGG	.	32	7	30	0	.	0	0	0	0	0
HOXA7	3204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27194707	27194707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	HOXA7-90	NM_006896	exon2	c.C514T	p.R172C	TCTGGCGCTCGGT	.	119	32	111	0	.	11	8	3	0	0
PILRA	29992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99972037	99972037	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	PILRA-91	NM_013439	exon2	c.C435T	p.T145T	GGGGACCAAACTC	.	79	21	85	0	.	5	4	1	0	0
MLL5	55904	broad.mit.edu	37	7	104750955	104750955	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MLL5-93	NM_018682	exon24	c.G3876T	p.P1292P	TTCACCGAGTCAT	.	134	5	151	0	.	5	5	0	0	0
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	28984749	28984749	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	KIF13B-22	NM_015254	exon25	c.G3112C	p.V1038L	CCTGCACTGACTT	.	132	9	121	0	.	13	11	2	0	0
DCAF13	25879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	104432551	104432551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	DCAF13-135	NM_015420	exon2	c.G586T	p.A196S	ATAAGAGCTTTAA	.	135	48	165	0	.	28	13	15	0	0
CCDC171	203238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	15745613	15745613	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	.	NM_173550	exon18	c.C2655T	p.D885D	ACAAGACGTCATT	.	44	16	43	0	.	0	0	0	0	0
ARSE	415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2861169	2861169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	ARSE-131	NM_000047	exon8	c.G1063A	p.G355S	AACCGCCGTGATC	.	91	62	87	0	.	30	0	30	0	0
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	21133827	21133829	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	EIF4G3-91	NM_001198801	exon35	c.4849_4851del	p.1617_1617del	.	.	99	33	108	0	.	0	0	0	0	0
MSH4	4438	hgsc.bcm.edu	37	1	76346925	76346930	+	Splice_Site	DEL	TTTCAG	TTTCAG	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	TTTCAG	TTTCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MSH4-660	.	.	.	.	.	.	59	11	82	0	.	0	0	0	0	0
MSH4	4438	bcgsc.ca	37	1	76346930	76346930	+	Splice_Site	DEL	G	G	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MSH4-660	NM_002440	exon14	c.1782-1G>-	.	TTTTCAGGATAGT	.	58	22	82	0	.	0	0	0	0	0
GPR37L1	9283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	202097307	202097311	+	Frame_Shift_Del	DEL	CTCAA	CTCAA	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	CTCAA	CTCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	GPR37L1-91	NM_004767	exon2	c.1069_1073del	p.357_358del	.	.	86	37	83	0	.	0	0	0	0	0
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	24832228	24832229	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	KIAA1217-98	NM_019590	exon19	c.4029_4030del	p.1343_1344del	.	.	309	132	304	0	.	0	0	0	0	0
IGFBP6	3489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53494509	53494509	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	IGFBP6-523	NM_002178	exon2	c.348delT	p.N116fs	.	.	71	30	62	0	.	0	0	0	0	0
HIF1A	3091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	62194216	62194223	+	Frame_Shift_Del	DEL	AACCAACC	AACCAACC	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AACCAACC	AACCAACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	HIF1A-1149	NM_001243084	exon6	c.688_695del	p.230_232del	.	.	93	15	146	0	.	0	0	0	0	0
HIF1A	3091	hgsc.bcm.edu	37	14	62194216	62194225	+	Frame_Shift_Del	DEL	AACCAACCTC	AACCAACCTC	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AACCAACCTC	AACCAACCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	HIF1A-1149	NM_001243084	exon6	c.688_697del	p.230_233del	.	.	100	15	152	0	.	0	0	0	0	0
HIF1A	3091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	62194225	62194225	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	HIF1A-1149	NM_001243084	exon6	c.697delC	p.Q233fs	.	.	98	15	156	0	.	0	0	0	0	0
THUMPD2	80745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	39964198	39964199	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	THUMPD2-91	NM_025264	exon10	c.1188_1189del	p.396_397del	.	.	124	23	94	0	.	0	0	0	0	0
HOXD10	3236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	176981597	176981599	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	HOXD10-91	NM_002148	exon1	c.36_38del	p.12_13del	.	.	80	33	80	0	.	0	0	0	0	0
GLS	2744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	191788697	191788701	+	Frame_Shift_Del	DEL	AAAAG	AAAAG	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AAAAG	AAAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	GLS-92	NM_014905	exon10	c.1185_1189del	p.395_397del	.	.	120	34	132	0	.	0	0	0	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	187629210	187629211	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	FAT1-34	NM_005245	exon2	c.1771_1772del	p.591_591del	.	.	53	25	84	0	.	0	0	0	0	0
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	36986201	36986204	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AAAG	AAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	NIPBL-293	NM_015384	exon10	c.2919_2922del	p.973_974del	.	.	80	17	92	0	.	0	0	0	0	0
SETD9	133383	broad.mit.edu;bcgsc.ca	37	5	56210690	56210691	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	.	NM_153706	exon5	c.709_710del	p.237_237del	CTAGACAGAGCAG	.	97	11	86	0	.	0	0	0	0	0
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	118556763	118556765	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	DMXL1-92	NM_005509	exon36	c.8201_8203del	p.2734_2735del	.	.	313	96	385	0	.	0	0	0	0	0
TRIM39	56658	hgsc.bcm.edu;bcgsc.ca	37	6	30303731	30303752	+	Frame_Shift_Del	DEL	GTCAGGCTTCGAGATGCTTAAG	GTCAGGCTTCGAGATGCTTAAG	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	GTCAGGCTTCGAGATGCTTAAG	GTCAGGCTTCGAGATGCTTAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	TRIM39-161	NM_172016	exon5	c.759_780del	p.253_260del	.	.	40	13	91	0	.	0	0	0	0	0
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	92731495	92731495	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	SAMD9-140	NM_001193307	exon2	c.3916delA	p.I1306fs	.	.	32	12	28	0	.	0	0	0	0	0
KIAA2026	158358	broad.mit.edu	37	9	5923077	5923078	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	KIAA2026-92	NM_001017969	exon8	c.2918_2919del	p.973_973del	ACTGAAACAGTCA	.	250	10	198	0	.	0	0	0	0	0
CFDP1	10428	broad.mit.edu	37	16	75446511	75446512	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	CFDP1-91	NM_006324	exon3	c.324_325insA	p.K108fs	CTCCTTCTTTTTC	.	212	7	124	0	.	0	0	0	0	0
TEKT4	150483	broad.mit.edu	37	2	95539829	95539830	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	TEKT4-155	NM_144705	exon3	c.689_690insG	p.P230fs	CTCATCCGTACTC	.	171	7	141	0	.	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305774	39305775	+	Missense_Mutation	DNP	CT	CT	GC	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	KRTAP4-5-90	NM_033188	exon1	c.A245G	p.Q82R	GTGGTCTGGCAGC	.	86.0	26.0	74.0	0.0	.	0	0	0	0	0
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50728592	50728593	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	PLXNB2-211	NM_012401	exon3	c.A421G	p.K141V	AAGACTTCTCCCC	.	113.0	41.0	110.0	0.0	.	0	0	0	0	0