Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TNFRSF25	8718	broad.mit.edu	37	1	6522060	6522060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	TNFRSF25-714	NM_148965	exon9	c.G946T	p.A316S	CAAGAGCTCTGCT	.	77	6	66	1	.	0	0	0	0	0
DCLRE1B	64858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	114454514	114454514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	DCLRE1B-227	NM_022836	exon4	c.C1300T	p.H434Y	TCAGTGCACTTAA	.	134	18	135	0	.	4	4	0	0	0
ACP6	51205	broad.mit.edu	37	1	147142085	147142085	+	Missense_Mutation	SNP	A	A	C	rs201678741		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	ACP6-94	NM_016361	exon1	c.T86G	p.V29G	AGGGCCACCCGCC	.	151	41	33	7	.	1	1	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880061	64880061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	TM7SF2-91	NM_003273	exon2	c.C127T	p.R43C	CCCGCGCGCCTGC	.	13	8	0	0	.	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751497	76751497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	.	NM_138706	exon2	c.A902G	p.H301R	CCCGCCACACCCC	.	8	4	2	0	.	0	0	0	0	0
GRAMD1B	57476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	123476178	123476178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	GRAMD1B-69	NM_020716	exon9	c.C886T	p.P296S	GAGGCCCCCGTCT	.	147	45	121	0	.	0	0	0	0	0
CLEC2D	29121	broad.mit.edu;bcgsc.ca	37	12	9840539	9840539	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	CLEC2D-90	NM_001004419	exon3	c.C214G	p.Q72E	TGTCTTCAAGCTG	.	48	4	49	0	.	18	18	0	0	0
B4GALNT1	2583	broad.mit.edu	37	12	58021430	58021430	+	Silent	SNP	T	T	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	B4GALNT1-514	NM_001478	exon10	c.C1355C	p.S452S	CGGGGGTCGAAAC	.	163	44	70	13	.	1	1	0	0	0
CUX2	23316	broad.mit.edu	37	12	111757856	111757856	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	CUX2-140	NM_015267	exon17	c.C2043T	p.N681N	CGCCAACGGCACG	.	77	5	16	0	.	0	0	0	0	0
BRAP	8315	hgsc.bcm.edu;broad.mit.edu	37	12	112096635	112096635	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	BRAP-710	NM_006768	exon9	c.C1126T	p.R376X	CCAGTCGATGAAC	.	80	5	78	0	.	4	4	0	0	0
MED13L	23389	ucsc.edu	37	12	116428913	116428913	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	MED13L-232	NM_015335	exon17	c.G3846A	p.G1282G	CTGCCGCCCCTGC	.	121	1	125	0	.	4	4	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	46	4	13	1	.	9	9	0	0	0
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	81969202	81969202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SEL1L-227	NM_001244984	exon6	c.G640A	p.A214T	TGCTTGCTGCCTT	.	79	22	61	0	.	0	0	0	0	0
IGDCC3	9543	broad.mit.edu	37	15	65628245	65628245	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	IGDCC3-93	NM_004884	exon3	c.T459C	p.G153G	CACACCACCCTCC	.	171	4	185	1	.	0	0	0	0	0
ACAN	176	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	89398215	89398215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	ACAN-25	NM_001135	exon12	c.C2399T	p.S800F	AGCCATCCCCCTC	.	190	68	131	1	.	0	0	0	0	0
PRSS41	360226	hgsc.bcm.edu	37	16	2848501	2848501	+	Missense_Mutation	SNP	G	G	T	rs182642527		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	.	NM_001135086	exon1	c.G16T	p.A6S	CGCGGGGCGCTGC	.	15	14	0	0	G|0.965;T|0.035	0	0	0	0	0
MYBBP1A	10514	broad.mit.edu	37	17	4445773	4445773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	MYBBP1A-92	NM_014520	exon22	c.C3073T	p.R1025W	GGGGCCGCACCGG	.	89	4	106	0	.	6	6	0	0	0
SUPT6H	6830	ucsc.edu	37	17	27002024	27002024	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SUPT6H-93	NM_003170	exon5	c.G382C	p.E128Q	GATGACGAGGACG	.	303	1	241	1	.	9	0	9	0	0
KIF19	124602	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72340927	72340927	+	Silent	SNP	C	C	A	rs146234533	alternate_allele	TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	KIF19-90	NM_153209	exon7	c.C610A	p.R204R	GGGAACCGGCAGA	.	204	53	151	2	C|1.000;T|0.000	0	0	0	0	0
BTBD2	55643	broad.mit.edu	37	19	1986958	1986958	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	BTBD2-92	NM_017797	exon8	c.C1287T	p.S429S	GGTGTTGCTATCG	.	98	3	103	0	.	121	111	10	0	0
LSM14A	26065	broad.mit.edu	37	19	34710315	34710315	+	Silent	SNP	T	T	G	rs201741862		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	LSM14A-91	NM_001114093	exon7	c.T801G	p.A267A	TTCAGCTCCAAGG	.	98	3	71	2	T|0.999;G|0.001	9	9	0	0	0
RYR1	6261	broad.mit.edu	37	19	38995663	38995663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	RYR1-100	NM_001042723	exon52	c.T8252C	p.L2751P	AGAAGCTGGACTC	.	165	5	154	0	.	0	0	0	0	0
ZNF628	89887	hgsc.bcm.edu	37	19	55993264	55993264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	ZNF628-22	NM_033113	exon3	c.C704T	p.A235V	GTACCGCCTCCGC	.	7	5	1	0	.	0	0	0	0	0
MTA3	57504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	42886918	42886918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	MTA3-24	NM_020744	exon8	c.C618A	p.F206L	GACATTCGCCAGA	.	84	5	80	0	.	5	5	0	0	0
WDSUB1	151525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160139417	160139417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	WDSUB1-90	NM_152528	exon2	c.A164G	p.Y55C	ACAGCATAGGTAT	.	261	27	243	0	.	1	0	1	0	0
SF3B1	23451	ucsc.edu	37	2	198270048	198270048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SF3B1-140	NM_012433	exon10	c.A1388G	p.N463S	GGAAGATTTCCAG	.	185	1	136	0	.	5	0	5	0	0
ING5	84289	broad.mit.edu	37	2	242664404	242664404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	.	NM_032329	exon8	c.G681T	p.W227C	TCACAGGTTCTGT	.	114	5	80	0	.	0	0	0	0	0
SLCO4A1	28231	broad.mit.edu	37	20	61288357	61288357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SLCO4A1-91	NM_016354	exon2	c.C551T	p.S184L	CGGGGTCGCTGGT	.	121	4	27	0	.	2	2	0	0	0
TOP3B	8940	broad.mit.edu	37	22	22318552	22318552	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	TOP3B-538	NM_003935	exon10	c.A1079C	p.H360P	TAGGGGTGGTTGG	.	133	12	124	8	.	0	0	0	0	0
GTDC2	84892	broad.mit.edu	37	3	43121560	43121560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	.	NM_032806	exon2	c.C1364T	p.P455L	AGGGACGGGATGT	.	145	3	140	0	.	0	0	0	0	0
ETV5	2119	broad.mit.edu	37	3	185797720	185797720	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	ETV5-706	NM_004454	exon7	c.A536C	p.H179P	AGCGAATGGGGGG	.	51	8	63	6	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195512213	195512213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	MUC4-90	NM_018406	exon2	c.C6238T	p.P2080S	GAAGAGGGGTGGC	.	497	25	491	11	.	0	0	0	0	0
DOK7	285489	broad.mit.edu	37	4	3494664	3494664	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	DOK7-91	NM_173660	exon7	c.A951C	p.P317P	AAGGCCACCCCCC	.	134	39	30	2	.	0	0	0	0	0
BST1	683	hgsc.bcm.edu	37	4	15704874	15704874	+	Missense_Mutation	SNP	G	G	C	rs2302468		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	BST1-90	NM_004334	exon1	c.G107C	p.G36A	GGCGCGGGGAGGG	.	18	7	2	0	G|0.084;C|0.916	0	0	0	0	0
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	85675021	85675021	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	WDFY3-93	NM_014991	exon35	c.A5568G	p.Q1856Q	TTCTGATTGCCAA	.	145	39	127	0	.	0	0	0	0	0
MTRR	4552	broad.mit.edu	37	5	7878351	7878351	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	MTRR-91	NM_024010	exon5	c.A777C	p.V259V	TTCGGTACCCCCA	.	96	12	99	16	.	2	2	0	0	0
SNX2	6643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	122154607	122154607	+	Silent	SNP	T	T	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SNX2-226	NM_003100	exon11	c.T1101G	p.L367L	TCAGCTTGCAGAG	.	123	7	100	0	.	19	14	5	0	0
ARHGAP26	23092	broad.mit.edu	37	5	142281554	142281554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	ARHGAP26-660	NM_015071	exon7	c.G652A	p.A218T	GAACTGGCCAAGG	.	233	4	224	0	.	0	0	0	0	0
NKX2-5	1482	broad.mit.edu	37	5	172659730	172659730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	NKX2-5-90	NM_004387	exon2	c.G817T	p.A273S	GGTAAGCGGCAGT	.	224	13	68	0	.	0	0	0	0	0
SERPINB6	5269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	2955761	2955761	+	Silent	SNP	G	G	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SERPINB6-226	NM_001271823	exon3	c.C366G	p.L122L	TACTGAGAGGAAA	.	94	9	88	0	.	0	0	0	0	0
SRRT	51593	broad.mit.edu	37	7	100482130	100482130	+	Missense_Mutation	SNP	G	G	A	rs140745082		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SRRT-92	NM_001128853	exon7	c.G899A	p.R300H	GGGAGCGCAAAAC	.	199	6	191	0	G|1.000;A|0.000	30	30	0	0	0
SGK223	0	broad.mit.edu	37	8	8239069	8239069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	.	NM_001080826	exon1	c.G189T	p.R63S	CTCAGGCCTGGGA	.	117	9	55	1	.	0	0	0	0	0
TERF1	7013	broad.mit.edu;bcgsc.ca	37	8	73926211	73926211	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	TERF1-228	NM_017489	exon2	c.C401G	p.A134G	TTGCAGCAGGAAA	.	251	7	283	0	.	0	0	0	0	0
NBN	4683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	90967743	90967743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	NBN-1395	NM_002485	exon10	c.A1165G	p.M389V	GTTCCATTTTGGA	.	42	14	35	0	.	3	0	3	0	0
FREM1	158326	broad.mit.edu	37	9	14770686	14770686	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	FREM1-138	NM_144966	exon27	c.C4976A	p.S1659X	GGGTCTGATGCCT	.	175	4	169	1	.	0	0	0	0	0
TAF1L	138474	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	32633310	32633310	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	TAF1L-870	NM_153809	exon1	c.C2268T	p.G756G	TAATTGGCCAGGA	.	254	20	254	0	.	0	0	0	0	0
DCAF10	79269	hgsc.bcm.edu	37	9	37800965	37800965	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	DCAF10-115	NM_024345	exon1	c.G102T	p.P34P	CGGGCCGCCCTCG	.	12	8	0	0	.	0	0	0	0	0
STX17	55014	broad.mit.edu	37	9	102730843	102730843	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	STX17-153	NM_017919	exon8	c.T797G	p.V266G	GTGGGGTGTTGGG	.	159	21	130	14	.	2	2	0	0	0
SLC2A6	11182	broad.mit.edu	37	9	136340607	136340607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SLC2A6-90	NM_017585	exon5	c.C689A	p.A230D	CGCAGGGCCTCTT	.	190	8	79	1	.	0	0	0	0	0
RNF128	79589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	106034465	106034465	+	Splice_Site	SNP	G	G	A	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	RNF128-227	NM_024539	exon6	c.1075+1G>A	.	CAACAAGTAAGCA	.	136	33	141	0	.	0	0	0	0	0
HS3ST4	9951	broad.mit.edu;bcgsc.ca	37	16	26147018	26147018	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	HS3ST4-67	NM_006040	exon2	c.820delA	p.I274fs	AAGCGCATTCACT	.	112	12	78	0	.	0	0	0	0	0
HS3ST4	9951	broad.mit.edu;bcgsc.ca	37	16	26147021	26147023	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	HS3ST4-67	NM_006040	exon2	c.823_825del	p.275_275del	CGCATTCACTCCA	.	115	12	80	0	.	0	0	0	0	0
SYN2	6854	broad.mit.edu	37	3	12046124	12046126	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SYN2-24	.	.	.	.	CCAGCAAGCGCCG	.	15	5	5	0	.	0	0	0	0	0
TCHH	7062	hgsc.bcm.edu	37	1	152084657	152084658	+	In_Frame_Ins	INS	-	-	CTC	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	TCHH-72	NM_007113	exon3	c.1036_1037insGAG	p.R346delinsER	.	.	48	10	9	0	.	0	0	0	0	0