Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TMEM88B	643965	hgsc.bcm.edu	hg19	1	1361730	1361730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	.	NM_001146685	exon1	c.G223A	p.A75T	GCGGCCGCCGTCG	.	46.0	18.0	63.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CROCC	9696	hgsc.bcm.edu	hg19	1	17275371	17275371	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	CROCC	NM_014675	exon19	c.A2786T	p.Q929L	GGGAGCAGCTGGA	.	194.0	40.0	314.0	0.0	.	185	.	.	.	none	.	.	PASS	Atlas-SNP
SF3A3	10946	hgsc.bcm.edu	hg19	1	38435391	38435391	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	SF3A3	NM_006802	exon13	c.C1022G	p.T341S	TCATGAGTGAGAT	.	74.0	32.0	46.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
GUCA2A	2980	hgsc.bcm.edu	hg19	1	42628612	42628612	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	GUCA2A	NM_033553	exon3	c.G313T	p.E105X	AGATTTCACATGT	.	51.0	21.0	61.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
RAVER2	55225	hgsc.bcm.edu	hg19	1	65272954	65272954	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	RAVER2	NM_018211	exon9	c.A1438C	p.N480H	TTTCCAAATCAGC	.	104.0	37.0	89.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
ACADM	34	hgsc.bcm.edu	hg19	1	76200537	76200537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	ACADM	NM_001127328	exon6	c.C461A	p.T154N	GAATGACTGAGGA	.	127.0	46.0	159.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144917856	144917856	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	PDE4DIP	NM_001002811	exon7	c.T1919A	p.L640H	TGGCGAAGTTTCT	.	361.0	67.0	289.0	0.0	.	817	.	.	.	none	.	.	PASS	Atlas-SNP
GPR89A	653519	hgsc.bcm.edu	hg19	1	145816732	145816732	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	GPR89A	NM_001097612	exon3	c.G111A	p.Q37Q	AACATACTGACGT	.	939.0	222.0	877.0	1.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
NUP210L	91181	hgsc.bcm.edu	hg19	1	154067632	154067632	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	NUP210L	NM_001159484	exon15	c.G1966C	p.A656P	TTAAAGCCTGATG	.	113.0	41.0	83.0	0.0	.	181	.	.	.	none	.	.	PASS	Atlas-SNP
NCF2	4688	hgsc.bcm.edu	hg19	1	183543737	183543737	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	NCF2	NM_001127651	exon5	c.T386A	p.F129Y	TACATGAAAGCAA	.	113.0	37.0	65.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
PRELP	5549	hgsc.bcm.edu	hg19	1	203452750	203452750	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	PRELP	NM_201348	exon2	c.G438T	p.L146L	GGTGCTGGAGAAA	.	166.0	61.0	224.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
PUM2	23369	hgsc.bcm.edu	hg19	2	20463043	20463043	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	PUM2	NM_015317	exon13	c.A2136T	p.E712D	GAAATCTTCCAAT	.	115.0	74.0	109.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
SLC8A1	6546	hgsc.bcm.edu	hg19	2	40387976	40387976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	SLC8A1	NM_021097	exon8	c.C2198A	p.T733K	AGGTTTGTCTTCT	.	104.0	83.0	49.0	0.0	.	221	.	.	.	none	.	.	PASS	Atlas-SNP
GFPT1	2673	hgsc.bcm.edu	hg19	2	69575353	69575353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	GFPT1	NM_001244710	exon11	c.C959A	p.P320H	CGTCCGGGGTGAT	.	113.0	5.0	66.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM87B	84910	hgsc.bcm.edu	hg19	2	112858240	112858240	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	TMEM87B	NM_032824	exon15	c.T1418A	p.I473N	ATGAAATTGAGGA	.	215.0	154.0	152.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
PDCD6IP	10015	hgsc.bcm.edu	hg19	3	33894165	33894165	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	PDCD6IP	NM_001162429	exon13	c.A1842G	p.G614G	CTATGGAGGTCTT	.	476.0	137.0	570.0	1.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
SCAP	22937	hgsc.bcm.edu	hg19	3	47476560	47476560	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	SCAP	NM_012235	exon3	c.T190A	p.Y64N	GCGAGTAATCCTT	.	93.0	30.0	77.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
APOD	347	hgsc.bcm.edu	hg19	3	195295856	195295856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	APOD	NM_001647	exon5	c.C485T	p.S162F	TTTAGAGAGTCCA	.	172.0	65.0	166.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
SEL1L3	23231	hgsc.bcm.edu	hg19	4	25785855	25785855	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	SEL1L3	NM_015187	exon14	c.T2275A	p.S759T	CCTTGGAAGCTGC	.	108.0	35.0	56.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD50	57182	hgsc.bcm.edu	hg19	4	125591071	125591071	+	Missense_Mutation	SNP	G	G	T	rs143672935	alternate_allele	TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	ANKRD50	NM_020337	exon4	c.C3361A	p.L1121I	ACTGTAGAGGTTT	.	131.0	41.0	68.0	0.0	.	136	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
C6	729	hgsc.bcm.edu	hg19	5	41199944	41199944	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	C6	NM_001115131	exon4	c.T371A	p.F124Y	GGTTGAAAGGCTA	.	166.0	54.0	97.0	0.0	.	197	.	.	.	none	.	.	PASS	Atlas-SNP
SGTB	54557	hgsc.bcm.edu	hg19	5	65000107	65000107	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	SGTB	NM_019072	exon5	c.A373T	p.R125W	TTTACCTGTTGCA	.	76.0	29.0	78.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71490573	71490573	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	MAP1B	NM_005909	exon5	c.C1391G	p.S464C	CGATTTCCTACTT	.	103.0	30.0	105.0	0.0	.	243	.	.	.	none	.	.	PASS	Atlas-SNP
IQGAP2	10788	hgsc.bcm.edu	hg19	5	75960919	75960919	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	IQGAP2	NM_006633	exon22	c.C2598T	p.T866T	TAACACCGACAAC	.	327.0	21.0	257.0	0.0	.	186	.	.	.	none	.	.	PASS	Atlas-SNP
ARSB	411	hgsc.bcm.edu	hg19	5	78135234	78135234	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	ARSB	NM_198709	exon7	c.C1158T	p.S386S	TCTGGGGGATGGG	.	97.0	26.0	81.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
ARRDC3	57561	hgsc.bcm.edu	hg19	5	90669556	90669556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	ARRDC3	NM_020801	exon7	c.C1133A	p.P378Q	AACAGTGGTCCTT	.	239.0	65.0	180.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
GRIA1	2890	hgsc.bcm.edu	hg19	5	153144063	153144063	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	GRIA1	NM_001258021	exon12	c.A1923G	p.T641T	ATATACAGCCAAT	.	127.0	43.0	98.0	0.0	.	321	.	.	.	none	.	.	PASS	Atlas-SNP
ADAM19	8728	hgsc.bcm.edu	hg19	5	156915305	156915305	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	ADAM19	NM_033274	exon21	c.A2518C	p.I840L	GGGGAATTGGCCG	.	127.0	38.0	139.0	0.0	.	216	.	.	.	none	.	.	PASS	Atlas-SNP
CLINT1	9685	hgsc.bcm.edu	hg19	5	157285937	157285937	+	Splice_Site	SNP	C	C	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	CLINT1	NM_014666	exon2	c.41+1G>C	.	TACTCACGCTTTG	.	117.0	41.0	178.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
FOXI1	2299	hgsc.bcm.edu	hg19	5	169532985	169532985	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	FOXI1,caecum,carcinoma,0,1	FOXI1	NM_012188	exon1	c.G24T	p.A8A	GCCGGCGCCCTCC	.	221.0	67.0	269.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
CANX	821	hgsc.bcm.edu	hg19	5	179150705	179150705	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	CANX	NM_001746	exon12	c.G1443A	p.P481P	GCGCCCGTGGCTG	.	91.0	29.0	97.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
RIPK1	8737	hgsc.bcm.edu	hg19	6	3104478	3104478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	RIPK1	NM_003804	exon7	c.A935G	p.N312S	ACGAAAATGCAGT	.	76.0	25.0	103.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
CPNE5	57699	hgsc.bcm.edu	hg19	6	36746667	36746667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	CPNE5	NM_020939	exon9	c.C596A	p.P199H	AAGAAGGGGTCAG	.	124.0	45.0	160.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
MRPS10	55173	hgsc.bcm.edu	hg19	6	42179572	42179572	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	MRPS10	NM_018141	exon4	c.T270A	p.S90R	TTCATAACTGTCC	.	92.0	32.0	92.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
C6orf170	221322	hgsc.bcm.edu	hg19	6	121447579	121447579	+	Silent	SNP	C	C	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	C6orf170	NM_152730	exon26	c.G2928T	p.V976V	ATGAAGCACAAAT	.	106.0	25.0	61.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
PCMT1	5110	hgsc.bcm.edu	hg19	6	150070960	150070960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	PCMT1	NM_005389	exon1	c.G97A	p.V33I	GAGGTGGTCTCAC	.	55.0	17.0	73.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
TULP4	56995	hgsc.bcm.edu	hg19	6	158915829	158915829	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	TULP4	NM_020245	exon11	c.A1821C	p.K607N	AACCAAATTTAAG	.	89.0	8.0	112.0	0.0	.	137	.	.	.	none	.	.	PASS	Atlas-SNP
IGF2R	3482	hgsc.bcm.edu	hg19	6	160453699	160453699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	IGF2R	NM_000876	exon8	c.G999T	p.E333D	CGGCGAGCAGCAG	.	63.0	26.0	60.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
NUPL2	11097	hgsc.bcm.edu	hg19	7	23221710	23221710	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	NUPL2	NM_007342	exon1	c.C6T	p.A2A	AATGGCCATTTGT	.	54.0	12.0	47.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
NME8	51314	hgsc.bcm.edu	hg19	7	37923905	37923905	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	.	NM_016616	exon13	c.A995T	p.D332V	ATTTAGATGATGT	.	318.0	67.0	134.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SAMD9	54809	hgsc.bcm.edu	hg19	7	92732597	92732597	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	SAMD9	NM_001193307	exon2	c.T2814A	p.C938X	TTTTTCACACTGT	.	125.0	64.0	78.0	0.0	.	239	.	.	.	none	.	.	PASS	Atlas-SNP
LRWD1	222229	hgsc.bcm.edu	hg19	7	102108717	102108717	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	LRWD1	NM_152892	exon7	c.T812A	p.V271E	CTGCTGTGAAGCT	.	114.0	21.0	112.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
KCND2	3751	hgsc.bcm.edu	hg19	7	119915439	119915439	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	KCND2	NM_012281	exon1	c.G753T	p.A251A	TGCAGCGCCTAGT	.	82.0	25.0	69.0	0.0	.	194	.	.	.	none	.	.	PASS	Atlas-SNP
CALU	813	hgsc.bcm.edu	hg19	7	128399077	128399077	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	CALU	NM_001199671	exon5	c.G592C	p.D198H	ATGAAAGATATAG	.	267.0	86.0	160.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
PODXL	5420	hgsc.bcm.edu	hg19	7	131241029	131241029	+	Silent	SNP	G	G	C	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	PODXL	NM_001018111	exon1	c.C90G	p.P30P	CTGGGAGGGCGAC	.	119.0	5.0	134.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
NUP205	23165	hgsc.bcm.edu	hg19	7	135304279	135304279	+	Missense_Mutation	SNP	T	T	G	rs368979726	alternate_allele	TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	NUP205	NM_015135	exon29	c.T4072G	p.S1358A	GAAACATCAGTCT	.	124.0	66.0	80.0	0.0	.	198	.	.	.	alt	.	.	PASS	Atlas-SNP
SHH	6469	hgsc.bcm.edu	hg19	7	155595950	155595950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	SHH	NM_000193	exon3	c.T1033C	p.Y345H	GCGCGTAGGCGCC	.	963.0	232.0	1212.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
DLC1	10395	hgsc.bcm.edu	hg19	8	13251117	13251117	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	DLC1	NM_182643	exon4	c.C1259G	p.T420R	AGGTCCGTGGACT	.	91.0	31.0	84.0	0.0	.	411	.	.	.	none	.	.	PASS	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	hg19	9	123898196	123898196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	CNTRL	NM_007018	exon13	c.A2138G	p.N713S	GGCTAAACCTAAG	.	147.0	58.0	129.0	0.0	.	161	.	.	.	none	.	.	PASS	Atlas-SNP
GPSM1	26086	hgsc.bcm.edu	hg19	9	139235387	139235387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	GPSM1	NM_015597	exon9	c.C1144A	p.L382I	CTGGTGCTCGGCC	.	83.0	30.0	126.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
ITIH2	3698	hgsc.bcm.edu	hg19	10	7773959	7773959	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	ITIH2	NM_002216	exon13	c.G1647T	p.S549S	GACTTCGGTACTT	.	83.0	28.0	88.0	0.0	.	144	.	.	.	none	.	.	PASS	Atlas-SNP
TNKS2	80351	hgsc.bcm.edu	hg19	10	93593660	93593660	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	TNKS2	NM_025235	exon12	c.T1326A	p.Y442X	TGCATATTGTGGT	.	111.0	43.0	72.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP5-8	57830	hgsc.bcm.edu	hg19	11	71249121	71249121	+	Missense_Mutation	SNP	C	C	G	rs200585722	bycluster	TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	KRTAP5-8	NM_021046	exon1	c.C20G	p.S7C	GCTGCTCTGGAGG	.	92.0	16.0	110.0	0.0	.	28	.	.	.	weak	.	.	PASS	Atlas-SNP
KRTAP5-8	57830	hgsc.bcm.edu	hg19	11	71249125	71249125	+	Silent	SNP	A	A	G	rs113379698	bycluster	TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	KRTAP5-8,rectum,carcinoma,0,1	KRTAP5-8	NM_021046	exon1	c.A24G	p.G8G	CTCTGGAGGCTGT	.	91.0	18.0	104.0	1.0	.	28	.	.	.	weak	A|0.500;G|0.500	0.500	PASS	Atlas-SNP
ATM	472	hgsc.bcm.edu	hg19	11	108192079	108192079	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	ATM	NM_000051	exon45	c.G6504T	p.S2168S	GTATTCGCTCTAT	.	86.0	4.0	86.0	0.0	.	1657	.	.	.	none	.	.	PASS	Atlas-SNP
PHLDB1	23187	hgsc.bcm.edu	hg19	11	118498946	118498946	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	PHLDB1	NM_001144758	exon6	c.C1407T	p.L469L	AGCTCTCTCCCCG	.	127.0	12.0	151.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
CDON	50937	hgsc.bcm.edu	hg19	11	125891166	125891166	+	Missense_Mutation	SNP	C	C	T	rs374113801	alternate_allele	TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	CDON	NM_016952	exon3	c.G326A	p.G109D	GCAGGGCCACTCA	.	55.0	22.0	45.0	0.0	.	137	.	.	.	alt	.	.	PASS	Atlas-SNP
CLEC1A	51267	hgsc.bcm.edu	hg19	12	10223995	10223995	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	CLEC1A	NM_016511	exon6	c.G780C	p.R260S	TCCTGCCCTTCTC	.	138.0	65.0	60.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
C2CD5	9847	hgsc.bcm.edu	hg19	12	22622701	22622701	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	.	NM_014802	exon22	c.A2475G	p.Q825Q	TGGAAATTGTAAA	.	163.0	36.0	67.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
DDX11	1663	hgsc.bcm.edu	hg19	12	31242339	31242339	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	DDX11	NM_030653	exon8	c.C795T	p.N265N	GCAGAACCTTTGT	.	384.0	21.0	440.0	0.0	.	188	.	.	.	none	.	.	PASS	Atlas-SNP
DDX11	1663	hgsc.bcm.edu	hg19	12	31256511	31256511	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	DDX11	NM_030653	exon26	c.G2537C	p.G846A	ATGCAGGCAGGGC	.	149.0	78.0	127.0	0.0	.	188	.	.	.	none	.	.	PASS	Atlas-SNP
PAWR	5074	hgsc.bcm.edu	hg19	12	79988144	79988144	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	PAWR	NM_002583	exon6	c.G901C	p.G301R	GTTTTCCAATCAT	.	126.0	70.0	77.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
MYO1H	283446	hgsc.bcm.edu	hg19	12	109843836	109843836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	MYO1H	NM_001101421	exon7	c.C911T	p.A304V	GGATAGCCAAGGT	.	85.0	42.0	72.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
RIMBP2	23504	hgsc.bcm.edu	hg19	12	130921587	130921587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	RIMBP2,NS,carcinoma,0,1	RIMBP2	NM_015347	exon10	c.G1855A	p.A619T	TCCTGGCGTGGGG	.	130.0	33.0	130.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	36229093	36229093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	NBEA,NS,carcinoma,0,1	NBEA	NM_015678	exon53	c.A8074G	p.I2692V	CGCTATATTCTTA	.	114.0	25.0	84.0	1.0	.	340	.	.	.	none	.	.	PASS	Atlas-SNP
LMO7	4008	hgsc.bcm.edu	hg19	13	76381810	76381810	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	LMO7	NM_015842	exon7	c.T692G	p.F231C	ATTTCTTTGTCAG	.	142.0	38.0	77.0	0.0	.	334	.	.	.	none	.	.	PASS	Atlas-SNP
RNF219	79596	hgsc.bcm.edu	hg19	13	79219122	79219122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	RNF219	NM_024546	exon2	c.C83A	p.P28H	ATGACAGGCTGAC	.	111.0	7.0	80.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
ESR2	2100	hgsc.bcm.edu	hg19	14	64699969	64699969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	ESR2	NM_001437	exon9	c.G1479T	p.E493D	CAGCATCTCCAGC	.	68.0	19.0	62.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
MGA	23269	hgsc.bcm.edu	hg19	15	41988958	41988958	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	MGA	NM_001080541	exon3	c.G1750C	p.G584R	GACTTGGGCAGAA	.	157.0	52.0	173.0	0.0	.	264	.	.	.	none	.	.	PASS	Atlas-SNP
FLYWCH1	84256	hgsc.bcm.edu	hg19	16	2980631	2980631	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	FLYWCH1	NM_020912	exon4	c.G543A	p.E181E	CCTGGAGGCCCGG	.	90.0	29.0	86.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
HYDIN	54768	hgsc.bcm.edu	hg19	16	71163576	71163576	+	Silent	SNP	C	C	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	HYDIN	NM_001198542	exon9	c.G1275C	p.L425L	GAAGAACAGCTTG	.	93.0	45.0	65.0	0.0	.	788	.	.	.	none	.	.	PASS	Atlas-SNP
GJD3	125111	hgsc.bcm.edu	hg19	17	38519536	38519536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	GJD3	NM_152219	exon1	c.G532A	p.D178N	AGCAGTCGACCGT	.	36.0	20.0	30.0	0.0	.	2	.	.	.	none	.	.	PASS	Atlas-SNP
KRT13	3860	hgsc.bcm.edu	hg19	17	39657556	39657556	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	KRT13	NM_153490	exon8	c.C1329A	p.T443T	AGAGGTGGTGGTA	.	195.0	26.0	149.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
PCYT2	5833	hgsc.bcm.edu	hg19	17	79865660	79865660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	PCYT2	NM_002861	exon5	c.C481A	p.H161N	TGCTGTGATGGGC	.	54.0	33.0	56.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
FOXK2	3607	hgsc.bcm.edu	hg19	17	80477826	80477826	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	FOXK2,NS,carcinoma,0,1	FOXK2	NM_004514	exon1	c.G62C	p.G21A	GGGCCGGGGGCGG	.	4.0	3.0	3.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
MUM1	84939	hgsc.bcm.edu	hg19	19	1371012	1371012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	MUM1	NM_032853	exon12	c.G1924A	p.A642T	GTGGGGGCCAAGG	.	66.0	20.0	87.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
NFIC	4782	hgsc.bcm.edu	hg19	19	3449135	3449135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	NFIC	NM_001245004	exon7	c.G1082T	p.S361I	TGCACAGCGGTAA	.	65.0	20.0	79.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
PLIN4	729359	hgsc.bcm.edu	hg19	19	4511775	4511775	+	Missense_Mutation	SNP	C	C	G	rs368515268	alternate_allele	TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	PLIN4_ENST00000301286,colon,carcinoma,0,2	PLIN4	NM_001080400	exon3	c.G2155C	p.V719L	TGCAGACGGTGTC	.	123.0	5.0	153.0	0.0	.	191	.	.	.	alt	.	.	PASS	Atlas-SNP
ZNF709	163051	hgsc.bcm.edu	hg19	19	12575506	12575506	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	ZNF709	NM_152601	exon4	c.T1230C	p.H410H	TCTTTCATGCATT	.	92.0	33.0	110.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
SIN3B	23309	hgsc.bcm.edu	hg19	19	16974595	16974595	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	SIN3B,NS,carcinoma,0,2	SIN3B	NM_015260	exon11	c.C1467T	p.D489D	TGAGGACGAGCGC	.	75.0	29.0	73.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
FKBP8	23770	hgsc.bcm.edu	hg19	19	18652713	18652713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	FKBP8	NM_012181	exon2	c.A68T	p.D23V	TCGAAGTCCTCGA	.	80.0	25.0	119.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
GPATCH1	55094	hgsc.bcm.edu	hg19	19	33600735	33600735	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	GPATCH1	NM_018025	exon11	c.C1398T	p.A466A	TCTGGCCCAGAAC	.	218.0	78.0	228.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
STRN4	29888	hgsc.bcm.edu	hg19	19	47226540	47226540	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	STRN4	NM_001039877	exon13	c.C1617T	p.D539D	GCTTGGGTCTGCA	.	55.0	14.0	83.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF543	125919	hgsc.bcm.edu	hg19	19	57839668	57839668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	ZNF543	NM_213598	exon4	c.G838A	p.E280K	AGTGGAGAGAAGC	.	96.0	4.0	100.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
KCNB1	3745	hgsc.bcm.edu	hg19	20	47991224	47991224	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	KCNB1,caecum,carcinoma,0,1	KCNB1	NM_004975	exon2	c.T873A	p.N291K	GCGGACATTCTGG	.	168.0	47.0	153.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	hg19	20	57829325	57829325	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	ZNF831	NM_178457	exon5	c.G4561C	p.G1521R	ACTGCAGGGAGGA	.	141.0	69.0	81.0	0.0	.	287	.	.	.	none	.	.	PASS	Atlas-SNP
RWDD2B	10069	hgsc.bcm.edu	hg19	21	30378846	30378846	+	Silent	SNP	A	A	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	RWDD2B	NM_016940	exon5	c.T852A	p.V284V	TCCATTAACACTG	.	115.0	50.0	128.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
CSNK1E	1454	hgsc.bcm.edu	hg19	22	38694925	38694925	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	CSNK1E	NM_001894	exon7	c.T751A	p.Y251N	TGAGGTATGTTGA	.	100.0	28.0	134.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
P2RY8	286530	hgsc.bcm.edu	hg19	X	1584748	1584748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	P2RY8	NM_178129	exon2	c.C704G	p.A235G	CCCACCGCGCGCC	.	94.0	38.0	172.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
XKRX	402415	hgsc.bcm.edu	hg19	X	100183149	100183149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	XKRX	NM_212559	exon1	c.G145A	p.A49T	CAGATGCAGCCTC	.	192.0	150.0	210.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
ATP2B3	492	hgsc.bcm.edu	hg19	X	152826188	152826188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	ATP2B3	NM_001001344	exon17	c.C2894A	p.P965H	CGCCACCCTCAGA	.	66.0	41.0	102.0	0.0	.	552	.	.	.	none	.	.	PASS	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	11622	11622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	.	ENST00000361381	exon1	c.A863G	p.Y288C	TTGCATACTCTTC	.	40.0	13.0	10.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	14120	14120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	.	ENST00000361567	exon1	c.T1784C	p.L595P	TCCCACTCATCCT	.	43.0	25.0	18.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195514852	195514852	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	MUC4	NM_018406	exon2	c.3600delT	p.P1200fs	.	.	131.0	35.0	118.0	0.0	.	1505	.	0.267176	0	none	.	.	PASS	Atlas-Indel,Pindel
P4HA3	283208	hgsc.bcm.edu	hg19	11	74009326	74009327	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	P4HA3	NM_182904	exon4	c.648_649insG	p.G216fs	.	.	74.0	27.0	28.0	0.0	.	43	.	0.364865	0	none	.	.	PASS	Atlas-Indel,Pindel
CLCN3	1182	hgsc.bcm.edu	hg19	4	170613433	170613433	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	CLCN3,NS,carcinoma,0,1	CLCN3	NM_001243372	exon7	c.897delC	p.L299fs	.	.	208.0	66.0	159.0	0.0	.	85	.	0.317308	0	none	.	.	PASS	Atlas-Indel,Pindel
EPHX2	2053	hgsc.bcm.edu	hg19	8	27398077	27398077	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	EPHX2	NM_001979	exon15	c.1282delC	p.L428fs	.	.	142.0	47.0	141.0	0.0	.	57	.	0.330986	0	none	.	.	PASS	Atlas-Indel,Pindel
KRTAP5-5	439915	hgsc.bcm.edu	hg19	11	1651643	1651645	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	CTA	CTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	KRTAP5-5	NM_001001480	exon1	c.572_574del	p.191_192del	.	.	56.0	14.0	70.0	0.0	.	86	.	0.25	0	none	.	.	PASS	Atlas-INDEL
DNMT3A	1788	hgsc.bcm.edu	hg19	2	25467157	25467158	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	DNMT3A	NM_175629	exon15	c.1718_1719insC	p.Q573fs	.	.	86.0	55.0	119.0	0.0	.	1807	.	0.639535	0	none	.	.	PASS	Atlas-Indel,Pindel
TMEM50B	757	hgsc.bcm.edu	hg19	21	34841130	34841131	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	TMEM50B	NM_006134	exon2	c.63_64del	p.21_22del	.	.	102.0	28.0	76.0	0.0	.	25	.	0.27451	0	none	.	.	PASS	Atlas-Indel,Pindel
PLLP	51090	hgsc.bcm.edu	hg19	16	57292497	57292497	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	PLLP	NM_015993	exon3	c.310delT	p.L104X	.	.	96.0	19.0	104.0	0.0	.	11	.	0.197917	0	none	.	.	PASS	Atlas-Indel,Pindel
AAAS	8086	hgsc.bcm.edu	hg19	12	53701653	53701655	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	AAAS	NM_015665	exon15	c.1391_1393del	p.464_465del	.	.	132.0	64.0	110.0	0.0	.	46	.	0.484848	0	none	.	.	PASS	Atlas-Indel,Pindel
OR6C1	390321	hgsc.bcm.edu	hg19	12	55714634	55714634	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	OR6C1	NM_001005182	exon1	c.250delA	p.I84fs	.	.	83.0	47.0	30.0	0.0	.	58	.	0.566265	0	none	.	.	PASS	Atlas-Indel,Pindel
DNAH2	146754	hgsc.bcm.edu	hg19	17	7663108	7663108	+	Splice_Site	DEL	G	G	-	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	DNAH2	NM_020877	exon16	c.2638-2G>-	.	.	.	113.0	23.0	93.0	0.0	.	498	.	0.20354	0	none	.	.	PASS	Atlas-Indel,Pindel
SUGP2	10147	hgsc.bcm.edu	hg19	19	19106049	19106049	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	SUGP2	NM_001017392	exon9	c.3033delT	p.D1011fs	.	.	58.0	19.0	71.0	0.0	.	107	.	0.327586	0	none	.	.	PASS	Atlas-Indel,Pindel
VDAC3	7419	hgsc.bcm.edu	hg19	8	42262963	42262963	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	VDAC3	NM_001135694	exon10	c.837delA	p.G279fs	.	.	145.0	43.0	146.0	0.0	.	17	.	0.296552	0	none	.	.	PASS	Atlas-Indel,Pindel
MUC4	4585	hgsc.bcm.edu	hg19	3	195514228	195514228	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	MUC4	NM_018406	exon2	c.4224delT	p.P1408fs	.	.	111.0	23.0	103.0	0.0	.	1505	.	0.207207	0	none	.	.	PASS	Atlas-Indel,Pindel
ZFP36L2	678	hgsc.bcm.edu	hg19	2	43451900	43451925	+	Frame_Shift_Del	DEL	GCCCCCGGCGCCAGCAGGTCCTCGGC	GCCCCCGGCGCCAGCAGGTCCTCGGC	-	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	GCCCCCGGCGCCAGCAGGTCCTCGGC	GCCCCCGGCGCCAGCAGGTCCTCGGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	ZFP36L2	NM_006887	exon2	c.1019_1044del	p.340_348del	.	.	29.0	17.0	47.0	0.0	.	56	.	0.586207	0	none	.	.	PASS	Atlas-Indel,Pindel
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54839382	54839392	+	Frame_Shift_Del	DEL	CATCTTGAGAA	CATCTTGAGAA	-	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	CATCTTGAGAA	CATCTTGAGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	SPTBN1	NM_003128	exon4	c.384_394del	p.128_132del	.	.	122.0	67.0	98.0	0.0	.	378	.	0.54918	0	none	.	.	PASS	Atlas-Indel,Pindel
PLVAP	83483	hgsc.bcm.edu	hg19	19	17471595	17471595	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Z-A9J1-01A-11D-A382-10	TCGA-2Z-A9J1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	facc4ec7-af1e-4980-ae56-1f0cd0c7ae54	a57e8ad5-ef7e-47cc-8cc1-0bee5ece05fa	.	PLVAP	NM_031310	exon4	c.1227delC	p.N409fs	.	.	119.0	35.0	151.0	0.0	.	64	.	0.294118	0	none	.	.	PASS	Atlas-Indel,Pindel