Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm ZBTB48 3104 hgsc.bcm.edu hg19 1 6640799 6640799 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . ZBTB48 NM_005341 exon2 c.C130T p.L44F AGTGTCCTTGCCT . 131.0 59.0 143.0 0.0 . 33 . . . none . . PASS Atlas-SNP NIPAL3 57185 hgsc.bcm.edu hg19 1 24782759 24782759 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . NIPAL3 NM_020448 exon8 c.G769A p.A257T TATCAGGCTGCGT . 45.0 18.0 56.0 0.0 . 36 . . . none . . PASS Atlas-SNP MAN1C1 57134 hgsc.bcm.edu hg19 1 26107539 26107539 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . MAN1C1 NM_020379 exon10 c.A1586G p.Y529C AGAGCTACATGTA . 117.0 44.0 130.0 0.0 . 48 . . . none . . PASS Atlas-SNP MED18 54797 hgsc.bcm.edu hg19 1 28661029 28661029 + Missense_Mutation SNP C C A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . MED18 NM_017638 exon3 c.C175A p.L59I GTATTCCTCCTTA . 70.0 22.0 64.0 0.0 . 30 . . . none . . PASS Atlas-SNP MAGI3 260425 hgsc.bcm.edu hg19 1 113933805 113933805 + Missense_Mutation SNP G G C novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . MAGI3 NM_152900 exon1 c.G150C p.E50D CCGCGAGGAGCCC . 89.0 33.0 105.0 0.0 . 181 . . . none . . PASS Atlas-SNP VANGL1 81839 hgsc.bcm.edu hg19 1 116228127 116228127 + Silent SNP C C T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . VANGL1 NM_138959 exon7 c.C1293T p.I431I CTGCATCACCAAC . 103.0 32.0 126.0 0.0 . 65 . . . none . . PASS Atlas-SNP LOR 4014 hgsc.bcm.edu hg19 1 153233991 153233991 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . LOR NM_000427 exon2 c.A566G p.Y189C GCGGCTACTCTGG . 9.0 4.0 7.0 0.0 . 19 . . . none . . PASS Atlas-SNP MEF2D 4209 hgsc.bcm.edu hg19 1 156444934 156444934 + Silent SNP G G A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . MEF2D NM_005920 exon9 c.C972T p.L324L GAAGGGGAGGCCC . 73.0 30.0 91.0 0.0 . 43 . . . none . . PASS Atlas-SNP IGSF8 93185 hgsc.bcm.edu hg19 1 160063548 160063548 + Missense_Mutation SNP T T G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . IGSF8 NM_052868 exon3 c.A856C p.I286L CTGCAATCTGGGC . 46.0 16.0 50.0 0.0 . 59 . . . none . . PASS Atlas-SNP UAP1 6675 hgsc.bcm.edu hg19 1 162551113 162551113 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . UAP1 NM_003115 exon5 c.A698G p.Q233R CAGCCCAGAATAT . 99.0 37.0 127.0 0.0 . 47 . . . none . . PASS Atlas-SNP RGL1 23179 hgsc.bcm.edu hg19 1 183775571 183775571 + Silent SNP A A G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . RGL1 NM_015149 exon3 c.A195G p.K65K CCTCAAAAGAGTC . 54.0 20.0 76.0 0.0 . 91 . . . none . . PASS Atlas-SNP TPO 7173 hgsc.bcm.edu hg19 2 1507790 1507790 + Silent SNP C C T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . TPO NM_001206744 exon14 c.C2457T p.G819G CAAAGGCGGCTTC . 46.0 9.0 56.0 0.0 . 224 . . . none . . PASS Atlas-SNP ODC1 4953 hgsc.bcm.edu hg19 2 10584694 10584694 + Missense_Mutation SNP C C G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . ODC1 NM_002539 exon4 c.G182C p.R61P GTGACACGAGGGA . 78.0 26.0 78.0 0.0 . 40 . . . none . . PASS Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21266783 21266783 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . APOB NM_000384 exon1 c.T35C p.L12P AGCGCCAGCAGCG . 19.0 4.0 30.0 0.0 . 761 . . . none . . PASS Atlas-SNP USP34 9736 hgsc.bcm.edu hg19 2 61415653 61415653 + Missense_Mutation SNP T T A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . USP34 NM_014709 exon80 c.A10225T p.N3409Y AACTATTTTCAGG . 121.0 39.0 131.0 0.0 . 334 . . . none . . PASS Atlas-SNP TMEM237 65062 hgsc.bcm.edu hg19 2 202507331 202507331 + Splice_Site SNP C C G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . TMEM237 NM_152388 exon2 c.18+1G>C . CGCTTACCACAGG . 133.0 43.0 155.0 0.0 . 21 . . . none . . PASS Atlas-SNP TIGD1 200765 hgsc.bcm.edu hg19 2 233414485 233414485 + Missense_Mutation SNP T T C novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . TIGD1 NM_145702 exon1 c.A108G p.I36M TCGGCCTATCTCG . 83.0 5.0 98.0 0.0 . 17 . . . none . . PASS Atlas-SNP UGT1A5 54579 hgsc.bcm.edu hg19 2 234621902 234621902 + Missense_Mutation SNP T T A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . UGT1A5 NM_019078 exon1 c.T265A p.F89I GACGAATTTGATC . 75.0 35.0 106.0 0.0 . 66 . . . none . . PASS Atlas-SNP TRAK1 22906 hgsc.bcm.edu hg19 3 42240711 42240711 + Silent SNP C C T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . TRAK1 NM_001265608 exon11 c.C1156T p.L386L AAGGAGCTGCAGT . 85.0 36.0 124.0 0.0 . 188 . . . none . . PASS Atlas-SNP SETD2 29072 hgsc.bcm.edu hg19 3 47163553 47163553 + Missense_Mutation SNP C C G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . SETD2 NM_014159 exon3 c.G2573C p.S858T CTAGTGCTACCGA . 55.0 20.0 63.0 0.0 . 721 . . . none . . PASS Atlas-SNP WDR52 55779 hgsc.bcm.edu hg19 3 113115478 113115478 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . WDR52 NM_001164496 exon14 c.G1666A p.G556R TCCGTCCCGCAAA . 79.0 35.0 125.0 0.0 . 151 . . . none . . PASS Atlas-SNP ADPRH 141 hgsc.bcm.edu hg19 3 119305359 119305359 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 ADPRH,NS,carcinoma,0,1 ADPRH NM_001125 exon4 c.G526A p.A176T GCGTCTGCTCTTT . 65.0 27.0 74.0 0.0 . 33 . . . none . . PASS Atlas-SNP MBD4 8930 hgsc.bcm.edu hg19 3 129152076 129152076 + Missense_Mutation SNP G G T rs376050040 alternate_allele TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . MBD4 NM_003925 exon6 c.C1426A p.P476T GCACAGGTATTGC . 83.0 33.0 82.0 0.0 . 53 . . . alt . . PASS Atlas-SNP NOP14 8602 hgsc.bcm.edu hg19 4 2956275 2956275 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . NOP14 NM_003703 exon4 c.C488A p.A163D AAGTGGGCAGCAG . 21.0 7.0 32.0 0.0 . 69 . . . none . . PASS Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88537513 88537513 + Missense_Mutation SNP A A C rs112275895 TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . DSPP NM_014208 exon5 c.A3699C p.E1233D CAATGAAAGCAGC . 294.0 34.0 334.0 0.0 . 174 . . . weak A|0.500;C|0.500 0.500 PASS Atlas-SNP TAF9 6880 hgsc.bcm.edu hg19 5 68661336 68661336 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . TAF9 NM_003187 exon3 c.T229C p.C77R CGCGGCACTGGAT . 73.0 28.0 110.0 0.0 . 28 . . . none . . PASS Atlas-SNP PCDHB10 56126 hgsc.bcm.edu hg19 5 140573697 140573697 + Silent SNP G G C novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . PCDHB10 NM_018930 exon1 c.G1572C p.L524L GGCCCTGCAGGCT . 114.0 38.0 138.0 0.0 . 177 . . . none . . PASS Atlas-SNP PCDHGA12 26025 hgsc.bcm.edu hg19 5 140810981 140810981 + Missense_Mutation SNP G G C novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . PCDHGA12 NM_032094 exon1 c.G655C p.D219H GGGGGCGACCCGG . 61.0 20.0 74.0 0.0 . 271 . . . none . . PASS Atlas-SNP RARS2 57038 hgsc.bcm.edu hg19 6 88229389 88229389 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . RARS2 NM_020320 exon14 c.G1149A p.M383I AGTCTTCATTCCC . 130.0 52.0 117.0 0.0 . 61 . . . none . . PASS Atlas-SNP AP5Z1 9907 hgsc.bcm.edu hg19 7 4827394 4827394 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . . NM_014855 exon11 c.G1441T p.D481Y GTGCTGGACCTGC . 46.0 12.0 24.0 0.0 . . . . . none . . PASS Atlas-SNP ZNF212 7988 hgsc.bcm.edu hg19 7 148947362 148947362 + Missense_Mutation SNP C C A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . ZNF212 NM_012256 exon2 c.C137A p.A46D TGGTGGCCGCTAT . 127.0 65.0 128.0 0.0 . 28 . . . none . . PASS Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113303751 113303751 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . CSMD3 NM_198123 exon56 c.C8962A p.P2988T ATTCTGGTAAAGG . 103.0 29.0 92.0 0.0 . 2325 . . . none . . PASS Atlas-SNP SPATA31D1 389763 hgsc.bcm.edu hg19 9 84606600 84606600 + Silent SNP A A T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 FAM75D4,rectum,carcinoma,0,2 . NM_001001670 exon4 c.A1215T p.S405S CATCTCATTTCTC . 107.0 7.0 116.0 1.0 . . . . . none . . PASS Atlas-SNP C9orf84 158401 hgsc.bcm.edu hg19 9 114538143 114538143 + Missense_Mutation SNP T T C novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . C9orf84 NM_173521 exon3 c.A178G p.M60V AGTCCATGTGGGT . 121.0 48.0 140.0 0.0 . 207 . . . none . . PASS Atlas-SNP RGS3 5998 hgsc.bcm.edu hg19 9 116345868 116345868 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . RGS3 NM_144488 exon21 c.A2176G p.K726E CCCAACAAGGACT . 81.0 29.0 79.0 0.0 . 251 . . . none . . PASS Atlas-SNP RXRA 6256 hgsc.bcm.edu hg19 9 137323760 137323760 + Silent SNP G G T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . RXRA NM_002957 exon8 c.G1053T p.T351T GCTGACGGAGCTT . 77.0 21.0 89.0 0.0 . 52 . . . none . . PASS Atlas-SNP TMEM254 80195 hgsc.bcm.edu hg19 10 81850575 81850575 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 C10orf57,NS,carcinoma,0,1 TMEM254 NM_001270367 exon4 c.C346T p.R116W AGTGGTCGGGCTC . 52.0 22.0 62.0 0.0 . 1 . . . none . . PASS Atlas-SNP SLC25A28 81894 hgsc.bcm.edu hg19 10 101379882 101379882 + Missense_Mutation SNP T T A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . SLC25A28 NM_031212 exon1 c.A211T p.T71S TGACAGTGGCTCC . 19.0 6.0 26.0 0.0 . 34 . . . none . . PASS Atlas-SNP SEC31B 25956 hgsc.bcm.edu hg19 10 102265129 102265129 + Missense_Mutation SNP C C A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . SEC31B NM_015490 exon10 c.G1168T p.V390F ATGAAACACCTGT . 58.0 19.0 81.0 0.0 . 84 . . . none . . PASS Atlas-SNP AP2A2 161 hgsc.bcm.edu hg19 11 993296 993296 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . AP2A2 NM_001242837 exon12 c.C1468T p.P490S CAGGCTCCCGCGT . 44.0 12.0 48.0 0.0 . 50 . . . none . . PASS Atlas-SNP PPFIBP2 8495 hgsc.bcm.edu hg19 11 7660962 7660962 + Splice_Site SNP G G A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . PPFIBP2 NM_003621 exon15 c.1237-1G>A . CCAATAGGACAGC . 109.0 42.0 135.0 0.0 . 87 . . . none . . PASS Atlas-SNP NAV2 89797 hgsc.bcm.edu hg19 11 19854129 19854129 + Missense_Mutation SNP C C G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . NAV2 NM_145117 exon2 c.C367G p.Q123E CTGGCCCAGATTA . 27.0 8.0 45.0 0.0 . 255 . . . none . . PASS Atlas-SNP GPHA2 170589 hgsc.bcm.edu hg19 11 64702479 64702479 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . GPHA2 NM_130769 exon3 c.T272C p.I91T CCACTGATGGTGC . 64.0 24.0 77.0 0.0 . 13 . . . none . . PASS Atlas-SNP NPAS4 266743 hgsc.bcm.edu hg19 11 66190646 66190646 + Missense_Mutation SNP T T G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . NPAS4 NM_178864 exon5 c.T751G p.Y251D TCATGGTATGGAC . 58.0 23.0 90.0 0.0 . 133 . . . none . . PASS Atlas-SNP CARNS1 57571 hgsc.bcm.edu hg19 11 67186483 67186483 + Silent SNP C C G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . CARNS1 NM_001166222 exon5 c.C621G p.A207A GCTGGCCCGGCTG . 41.0 18.0 45.0 0.0 . 60 . . . none . . PASS Atlas-SNP POU2AF1 5450 hgsc.bcm.edu hg19 11 111229622 111229622 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . POU2AF1 NM_006235 exon2 c.C38T p.P13L GGGGCTGGGGCTT . 34.0 8.0 58.0 0.0 . 23 . . . none . . PASS Atlas-SNP PFKM 5213 hgsc.bcm.edu hg19 12 48536588 48536588 + Silent SNP A A T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . PFKM NM_001166686 exon20 c.A1890T p.S630S GCAGTCAGCAGCT . 117.0 65.0 97.0 0.0 . 117 . . . none . . PASS Atlas-SNP KRT80 144501 hgsc.bcm.edu hg19 12 52565443 52565443 + Silent SNP G G A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . KRT80 NM_182507 exon8 c.C1233T p.T411T CTCACCGGTTTTG . 169.0 88.0 169.0 0.0 . 68 . . . none . . PASS Atlas-SNP MYO1A 4640 hgsc.bcm.edu hg19 12 57431392 57431392 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . MYO1A NM_005379 exon19 c.C1995A p.S665R GGACATGCTCAGC . 88.0 23.0 77.0 0.0 . 122 . . . none . . PASS Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 71016216 71016216 + Nonsense_Mutation SNP G G T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . PTPRB NM_001109754 exon3 c.C662A p.S221X ACCCATGATGTGT . 90.0 44.0 60.0 0.0 . 676 . . . none . . PASS Atlas-SNP NAA25 80018 hgsc.bcm.edu hg19 12 112478370 112478370 + Missense_Mutation SNP T T A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . NAA25 NM_024953 exon21 c.A2453T p.K818I TTACATTTACTGA . 89.0 51.0 51.0 0.0 . 105 . . . none . . PASS Atlas-SNP NAA25 80018 hgsc.bcm.edu hg19 12 112499043 112499043 + Silent SNP A A G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . NAA25 NM_024953 exon12 c.T1299C p.N433N TTTCTGATTTTTA . 48.0 23.0 60.0 0.0 . 105 . . . none . . PASS Atlas-SNP EP400 57634 hgsc.bcm.edu hg19 12 132547068 132547068 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 EP400,NS,carcinoma,0,2 EP400 NM_015409 exon47 c.G8156A p.R2719K TTCTCAGGCAGCA . 108.0 8.0 67.0 1.0 . 370 . . . none . . PASS Atlas-SNP MEDAG 84935 hgsc.bcm.edu hg19 13 31495803 31495803 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . . NM_032849 exon4 c.G607T p.D203Y TTATTTGATTTCT . 106.0 10.0 118.0 0.0 . . . . . none . . PASS Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39263022 39263022 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . FREM2 NM_207361 exon1 c.C1541T p.A514V TGGCAGCCGGCCA . 37.0 19.0 70.0 0.0 . 385 . . . none . . PASS Atlas-SNP PHF11 51131 hgsc.bcm.edu hg19 13 50087269 50087269 + Silent SNP A A C novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . PHF11 NM_001040443 exon3 c.A291C p.S97S GGAATCAGTAAAG . 35.0 7.0 63.0 0.0 . 20 . . . none . . PASS Atlas-SNP KIAA0586 9786 hgsc.bcm.edu hg19 14 59006809 59006809 + Silent SNP C C A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . KIAA0586 NM_001244189 exon32 c.C4609A p.R1537R ATGGATCGGACAC . 99.0 39.0 134.0 0.0 . 180 . . . none . . PASS Atlas-SNP PCNX 22990 hgsc.bcm.edu hg19 14 71514621 71514621 + Missense_Mutation SNP C C A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . PCNX NM_014982 exon22 c.C4258A p.L1420M ACTGTGCTGTTTT . 71.0 30.0 58.0 0.0 . 198 . . . none . . PASS Atlas-SNP TTLL5 23093 hgsc.bcm.edu hg19 14 76156649 76156649 + Missense_Mutation SNP G G C rs374680809 alternate_allele TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . TTLL5 NM_015072 exon6 c.G486C p.E162D AGCTGAGTACGCG . 59.0 27.0 105.0 0.0 . 102 . . . alt . . PASS Atlas-SNP CDAN1 146059 hgsc.bcm.edu hg19 15 43023515 43023515 + Missense_Mutation SNP T T C novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . CDAN1 NM_138477 exon12 c.A1754G p.Q585R AGATGCTGGTTAA . 41.0 18.0 56.0 0.0 . 70 . . . none . . PASS Atlas-SNP VPS13C 54832 hgsc.bcm.edu hg19 15 62277127 62277127 + Silent SNP T T C novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . VPS13C NM_020821 exon19 c.A1650G p.P550P TATTTCTGGAATA . 338.0 122.0 344.0 0.0 . 506 . . . none . . PASS Atlas-SNP HAGH 3029 hgsc.bcm.edu hg19 16 1869933 1869933 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 .,1 HAGH NM_005326 exon4 c.C397A p.L133M GAGTCAGGGCCCC . 62.0 18.0 80.0 0.0 . 20 . . . none . . PASS Atlas-SNP PLEKHG4 25894 hgsc.bcm.edu hg19 16 67320229 67320229 + Missense_Mutation SNP A A T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . PLEKHG4 NM_001129728 exon15 c.A2495T p.D832V GCTCCGATGCCCT . 54.0 20.0 65.0 0.0 . 94 . . . none . . PASS Atlas-SNP PRPF8 10594 hgsc.bcm.edu hg19 17 1564944 1564944 + Missense_Mutation SNP T T G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . PRPF8 NM_006445 exon26 c.A4163C p.E1388A GCGTACTCAGCCC . 44.0 16.0 76.0 0.0 . 169 . . . none . . PASS Atlas-SNP SLC16A11 162515 hgsc.bcm.edu hg19 17 6945476 6945476 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . SLC16A11 NM_153357 exon3 c.T1025C p.L342P GCCAGCAGGGGAC . 56.0 18.0 63.0 0.0 . 25 . . . none . . PASS Atlas-SNP LSMD1 84316 hgsc.bcm.edu hg19 17 7760532 7760532 + Missense_Mutation SNP C C A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . LSMD1 NM_032356 exon1 c.G210T p.L70F GTGTAACAAGCGC . 43.0 18.0 49.0 0.0 . 8 . . . none . . PASS Atlas-SNP DSC1 1823 hgsc.bcm.edu hg19 18 28712612 28712612 + Silent SNP T T C novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . DSC1 NM_004948 exon14 c.A2157G p.T719T CTTGACTGTTCTC . 45.0 16.0 47.0 0.0 . 240 . . . none . . PASS Atlas-SNP AMH 268 hgsc.bcm.edu hg19 19 2251466 2251466 + Missense_Mutation SNP C C T rs368933314 alternate_allele TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . AMH NM_000479 exon5 c.C1193T p.P398L TGCCTCCGGCCAC . 6.0 4.0 1.0 0.0 . 12 . . . alt . . PASS Atlas-SNP LRG1 116844 hgsc.bcm.edu hg19 19 4538577 4538577 + Missense_Mutation SNP G G C novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . LRG1 NM_052972 exon2 c.C419G p.A140G AGGGTGGCTGAGG . 33.0 14.0 39.0 0.0 . 25 . . . none . . PASS Atlas-SNP COL5A3 50509 hgsc.bcm.edu hg19 19 10085009 10085009 + Missense_Mutation SNP A A T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . COL5A3 NM_015719 exon46 c.T3418A p.F1140I CCACAAAGCCTCT . 115.0 44.0 120.0 0.0 . 243 . . . none . . PASS Atlas-SNP PDE4A 5141 hgsc.bcm.edu hg19 19 10578237 10578237 + Silent SNP G G T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . PDE4A NM_001111307 exon15 c.G2601T p.G867G ATTTGGGGAGGAC . 52.0 19.0 42.0 0.0 . 236 . . . none . . PASS Atlas-SNP SLC5A5 6528 hgsc.bcm.edu hg19 19 18001737 18001737 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 SLC5A5,NS,NS,0,1 SLC5A5 NM_000453 exon14 c.G1694T p.W565L TGTGGTGGGACCT . 48.0 17.0 52.0 0.0 . 67 . . . none . . PASS Atlas-SNP ZNF99 7652 hgsc.bcm.edu hg19 19 22941432 22941432 + Missense_Mutation SNP A A C novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . ZNF99 NM_001080409 exon4 c.T1279G p.C427G CTTCACATTTGCA . 44.0 21.0 40.0 0.0 . 273 . . . none . . PASS Atlas-SNP ZNF529 57711 hgsc.bcm.edu hg19 19 37038656 37038656 + Missense_Mutation SNP T T G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . ZNF529 NM_001145649 exon6 c.A804C p.K268N AGTAACTTTTCCA . 60.0 26.0 69.0 0.0 . 82 . . . none . . PASS Atlas-SNP CAPN12 147968 hgsc.bcm.edu hg19 19 39233092 39233092 + Silent SNP T T A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . CAPN12 NM_144691 exon3 c.A384T p.G128G ATCCTGTCCAGGA . 265.0 101.0 289.0 0.0 . 43 . . . none . . PASS Atlas-SNP PPP2R1A 5518 hgsc.bcm.edu hg19 19 52714553 52714553 + Missense_Mutation SNP T T G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . PPP2R1A NM_014225 exon4 c.T311G p.V104G CAGTGGTGCGGGA . 69.0 33.0 76.0 0.0 . 187 . . . none . . PASS Atlas-SNP TMC4 147798 hgsc.bcm.edu hg19 19 54667538 54667538 + Missense_Mutation SNP A A C novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . TMC4 NM_001145303 exon8 c.T1213G p.F405V GCACAAAATTGAC . 129.0 45.0 115.0 0.0 . 89 . . . none . . PASS Atlas-SNP CENPB 1059 hgsc.bcm.edu hg19 20 3766089 3766089 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . CENPB NM_001810 exon1 c.G1042A p.A348T CTAGCGCGGCCAT . 75.0 30.0 61.0 0.0 . 24 . . . none . . PASS Atlas-SNP KIF16B 55614 hgsc.bcm.edu hg19 20 16486456 16486456 + Missense_Mutation SNP T T A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . KIF16B NM_001199865 exon9 c.A911T p.K304M ACTTGCTTCTTCT . 84.0 32.0 117.0 0.0 . 305 . . . none . . PASS Atlas-SNP B4GALT5 9334 hgsc.bcm.edu hg19 20 48260082 48260082 + Missense_Mutation SNP T T G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . B4GALT5 NM_004776 exon4 c.A470C p.D157A ATGCAATCAGAAG . 98.0 29.0 133.0 0.0 . 40 . . . none . . PASS Atlas-SNP HELZ2 85441 hgsc.bcm.edu hg19 20 62190711 62190711 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . . NM_001037335 exon20 c.T7838C p.L2613P CGCAGAAGGAGGT . 64.0 30.0 74.0 0.0 . . . . . none . . PASS Atlas-SNP NDUFV3 4731 hgsc.bcm.edu hg19 21 44324023 44324023 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . NDUFV3 NM_021075 exon3 c.G901T p.A301S TTGTCTGCGCCAC . 87.0 28.0 103.0 0.0 . 23 . . . none . . PASS Atlas-SNP TRPM2 7226 hgsc.bcm.edu hg19 21 45773684 45773684 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . TRPM2 NM_003307 exon1 c.G101A p.R34Q ATCTCCGGCGCAG . 117.0 50.0 132.0 0.0 . 196 . . . none . . PASS Atlas-SNP SUMO3 6612 hgsc.bcm.edu hg19 21 46226870 46226870 + Missense_Mutation SNP A A C novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . SUMO3 NM_006936 exon4 c.T308G p.F103C CTCTAGAAACTGT . 52.0 23.0 56.0 0.0 . 11 . . . none . . PASS Atlas-SNP GNAZ 2781 hgsc.bcm.edu hg19 22 23465473 23465473 + Missense_Mutation SNP T T C novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . GNAZ NM_002073 exon3 c.T923C p.F308S GGCAGTTTGAAGA . 76.0 34.0 87.0 0.0 . 45 . . . none . . PASS Atlas-SNP TNRC6B 23112 hgsc.bcm.edu hg19 22 40521834 40521834 + Nonsense_Mutation SNP G G T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . TNRC6B NM_001024843 exon3 c.G13T p.E5X ACCAATGAGGGAG . 122.0 44.0 142.0 0.0 . 195 . . . none . . PASS Atlas-SNP PKDREJ 10343 hgsc.bcm.edu hg19 22 46658026 46658026 + Silent SNP G G T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . PKDREJ NM_006071 exon1 c.C1194A p.V398V GTGACAGACTTCC . 83.0 39.0 91.0 0.0 . 195 . . . none . . PASS Atlas-SNP MOV10L1 54456 hgsc.bcm.edu hg19 22 50528560 50528560 + Missense_Mutation SNP A A T novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . MOV10L1 NM_018995 exon1 c.A43T p.T15S TGGAGGACGGCGG . 47.0 9.0 43.0 0.0 . 238 . . . none . . PASS Atlas-SNP ATP1B4 23439 hgsc.bcm.edu hg19 X 119504978 119504978 + Missense_Mutation SNP T T C novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . ATP1B4 NM_001142447 exon4 c.T475C p.F159L AGACCCTTCGCCC . 40.0 35.0 72.0 0.0 . 61 . . . none . . PASS Atlas-SNP FKBP1B 2281 hgsc.bcm.edu hg19 2 24283781 24283782 + Frame_Shift_Del DEL AG AG - novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 AG AG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . FKBP1B NM_004116 exon3 c.182_183del p.61_61del . . 73.0 22.0 106.0 0.0 . 11 . 0.30137 0 none . . PASS Atlas-Indel,Pindel ZNF469 84627 hgsc.bcm.edu hg19 16 88499104 88499104 + Frame_Shift_Del DEL C C - novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . ZNF469 NM_001127464 exon2 c.5141delG p.S1714fs . . 56.0 26.0 71.0 0.0 . 121 . 0.464286 0 none . . PASS Atlas-Indel,Pindel PMS2 5395 hgsc.bcm.edu hg19 7 6018319 6018320 + Frame_Shift_Del DEL GT GT - novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 GT GT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . PMS2 NM_000535 exon13 c.2183_2184del p.728_728del . . 517.0 183.0 226.0 0.0 . 88 . 0.353965 0 none . . PASS Atlas-INDEL WSCD1 23302 hgsc.bcm.edu hg19 17 6023951 6023951 + Frame_Shift_Del DEL G G - novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . WSCD1 NM_015253 exon9 c.1697delC p.T566fs . . 35.0 13.0 55.0 0.0 . 84 . 0.371429 0 none . . PASS Atlas-Indel,Pindel PDE4A 5141 hgsc.bcm.edu hg19 19 10572554 10572554 + Frame_Shift_Del DEL T T - novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . PDE4A NM_001111307 exon13 c.1621delG p.V541fs . . 57.0 21.0 33.0 0.0 . 236 . 0.368421 0 none . . PASS Atlas-Indel,Pindel INPP5F 22876 hgsc.bcm.edu hg19 10 121567442 121567445 + Splice_Site DEL TAGC TAGC - novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 TAGC TAGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . INPP5F . . . . . . 53.0 17.0 91.0 0.0 . 112 . 0.320755 0 none . . PASS Atlas-INDEL WDR91 29062 hgsc.bcm.edu hg19 7 134890789 134890789 + Frame_Shift_Del DEL T T - novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . WDR91 NM_014149 exon5 c.617delT p.I206fs . . 140.0 59.0 147.0 0.0 . 82 . 0.421 . none . . PASS Pindel FRMPD2 143162 hgsc.bcm.edu hg19 10 49380990 49380999 + Frame_Shift_Del DEL ATCTGTCACT ATCTGTCACT - novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 ATCTGTCACT ATCTGTCACT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . FRMPD2 NM_001018071 exon25 c.3214_3223del p.1072_1075del . . 493.0 23.0 589.0 0.0 . 157 . 0.047 . none . . PASS Pindel INPP5F 22876 hgsc.bcm.edu hg19 10 121567442 121567447 + Splice_Site DEL TTTAGC TTTAGC - novel TCGA-2Z-A9JL-01A-11D-A42J-10 TCGA-2Z-A9JL-10A-01D-A42M-10 TTTAGC TTTAGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d76bb38d-3ef3-4a37-bc21-5b7bc290d112 27a1d440-82fb-44f6-b007-5ad71c7b4cc1 . INPP5F . . . . . . 54.0 12.0 94.0 0.0 . 112 . 0.222 . none . . PASS Pindel