Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm PGD 5226 hgsc.bcm.edu hg19 1 10473152 10473152 + Missense_Mutation SNP T T C novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . PGD NM_002631 exon8 c.T688C p.S230P CTAGACTCATTCC . 49.0 12.0 56.0 0.0 . 39 . . . none . . PASS Atlas-SNP UBR4 23352 hgsc.bcm.edu hg19 1 19491316 19491316 + Silent SNP G G A novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 UBR4,NS,carcinoma,0,1 UBR4 NM_020765 exon32 c.C4488T p.T1496T GTATGTGGTCAGT . 64.0 19.0 54.0 0.0 . 415 . . . none . . PASS Atlas-SNP CDKN2C 1031 hgsc.bcm.edu hg19 1 51439795 51439795 + Silent SNP G G A novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . CDKN2C NM_001262 exon3 c.G360A p.E120E GGTGGAGTTCCTG . 85.0 26.0 89.0 0.0 . 24 . . . none . . PASS Atlas-SNP RPRD2 23248 hgsc.bcm.edu hg19 1 150390180 150390180 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . RPRD2 NM_015203 exon2 c.C314T p.P105L TACTTCCTGAAGC . 66.0 19.0 77.0 0.0 . 189 . . . none . . PASS Atlas-SNP NAV1 89796 hgsc.bcm.edu hg19 1 201777104 201777104 + Silent SNP G G T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . NAV1 NM_020443 exon18 c.G3672T p.A1224A CAAAGCGTTCAGT . 155.0 49.0 138.0 0.0 . 143 . . . none . . PASS Atlas-SNP CENPF 1063 hgsc.bcm.edu hg19 1 214819961 214819961 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . CENPF NM_016343 exon13 c.A7048G p.T2350A GCCAGGACAAACC . 224.0 78.0 164.0 0.0 . 321 . . . none . . PASS Atlas-SNP CDC42BPA 8476 hgsc.bcm.edu hg19 1 227216669 227216669 + Missense_Mutation SNP T T C novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . CDC42BPA NM_003607 exon29 c.A4016G p.K1339R TTAAATTTTCTGT . 35.0 13.0 33.0 0.0 . 528 . . . none . . PASS Atlas-SNP PEX13 5194 hgsc.bcm.edu hg19 2 61258902 61258902 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . PEX13 NM_002618 exon2 c.G441T p.M147I GATGATGGATGCT . 131.0 47.0 77.0 0.0 . 27 . . . none . . PASS Atlas-SNP RPIA 22934 hgsc.bcm.edu hg19 2 89036089 89036089 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 RPIA,face,carcinoma,0,1 RPIA NM_144563 exon7 c.G634A p.G212R CACAAGGGAATCC . 65.0 22.0 49.0 0.0 . 35 . . . none . . PASS Atlas-SNP ZNF35 7584 hgsc.bcm.edu hg19 3 44701072 44701072 + Missense_Mutation SNP T T A novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . ZNF35 NM_003420 exon4 c.T1217A p.I406N ACCTTATTGTGCA . 120.0 43.0 80.0 0.0 . 34 . . . none . . PASS Atlas-SNP FGF5 2250 hgsc.bcm.edu hg19 4 81207513 81207513 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . FGF5 NM_004464 exon3 c.G494A p.R165H GGGAGCGTTTTCA . 262.0 18.0 196.0 0.0 . 49 . . . none . . PASS Atlas-SNP GSTCD 79807 hgsc.bcm.edu hg19 4 106746923 106746923 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . GSTCD NM_001031720 exon8 c.A1496G p.N499S AAGCAAATATGGA . 184.0 60.0 197.0 0.0 . 69 . . . none . . PASS Atlas-SNP OTUD4 54726 hgsc.bcm.edu hg19 4 146063415 146063415 + Silent SNP A A T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . OTUD4 NM_001102653 exon18 c.T1560A p.P520P CACCGCAGGAGTT . 98.0 32.0 74.0 0.0 . 120 . . . none . . PASS Atlas-SNP C5orf42 65250 hgsc.bcm.edu hg19 5 37183541 37183541 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . C5orf42 NM_023073 exon26 c.C4742T p.S1581F TTTCCAGAAAAAC . 167.0 62.0 190.0 0.0 . 422 . . . none . . PASS Atlas-SNP PDE8B 8622 hgsc.bcm.edu hg19 5 76700575 76700575 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . PDE8B NM_001029852 exon12 c.G1241A p.R414K ACAGGAGGAAAGA . 77.0 24.0 65.0 0.0 . 103 . . . none . . PASS Atlas-SNP APC 324 hgsc.bcm.edu hg19 5 112154711 112154711 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . APC NM_001127510 exon11 c.G982T p.D328Y GATAAGGATGATA . 94.0 22.0 41.0 0.0 . 4158 . . . none . . PASS Atlas-SNP CDC25C 995 hgsc.bcm.edu hg19 5 137626353 137626353 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . CDC25C NM_001790 exon9 c.G839A p.G280E AGGTGCCCCTGGT . 130.0 40.0 99.0 0.0 . 37 . . . none . . PASS Atlas-SNP PCDHB16 57717 hgsc.bcm.edu hg19 5 140563836 140563836 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 PCDHB16,NS,carcinoma,0,1 PCDHB16 NM_020957 exon1 c.G1702A p.G568S CAGAACGGCTCCG . 33.0 3.0 45.0 1.0 . 159 . . . none . . PASS Atlas-SNP ANKS1A 23294 hgsc.bcm.edu hg19 6 34950966 34950966 + Missense_Mutation SNP C C A novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . ANKS1A NM_015245 exon6 c.C885A p.S295R AAAGAGCCAGCAA . 68.0 24.0 91.0 0.0 . 123 . . . none . . PASS Atlas-SNP IGF2R 3482 hgsc.bcm.edu hg19 6 160461724 160461724 + Missense_Mutation SNP G G C novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . IGF2R NM_000876 exon11 c.G1448C p.R483P AGAAGCGCTATGA . 48.0 15.0 90.0 0.0 . 251 . . . none . . PASS Atlas-SNP KCNH2 3757 hgsc.bcm.edu hg19 7 150655488 150655488 + Missense_Mutation SNP C C A novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . KCNH2 NM_000238 exon4 c.G575T p.G192V ACGGCCCCCGGGG . 187.0 23.0 436.0 0.0 . 157 . . . none . . PASS Atlas-SNP MATN2 4147 hgsc.bcm.edu hg19 8 99015912 99015912 + Nonsense_Mutation SNP A A T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . MATN2 NM_002380 exon8 c.A1228T p.K410X CTGAACAAACCGG . 104.0 23.0 81.0 0.0 . 165 . . . none . . PASS Atlas-SNP TG 7038 hgsc.bcm.edu hg19 8 133895243 133895243 + Silent SNP T T C novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . TG NM_003235 exon8 c.T1074C p.C358C ATCTTGTGGTGGG . 81.0 28.0 65.0 0.0 . 416 . . . none . . PASS Atlas-SNP VPS13A 23230 hgsc.bcm.edu hg19 9 79862227 79862227 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . VPS13A NM_001018038 exon20 c.G1953T p.L651F TAATTTGAAGGCT . 251.0 86.0 336.0 0.0 . 735 . . . none . . PASS Atlas-SNP DAB2IP 153090 hgsc.bcm.edu hg19 9 124544633 124544633 + Silent SNP T T C novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . DAB2IP NM_032552 exon16 c.T3342C p.D1114D GTTGGATGCCGCC . 105.0 48.0 147.0 0.0 . 150 . . . none . . PASS Atlas-SNP DNAJB12 54788 hgsc.bcm.edu hg19 10 74095644 74095644 + Missense_Mutation SNP A A T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . DNAJB12 NM_017626 exon8 c.T1154A p.M385K TGGTACATATCTG . 72.0 17.0 84.0 0.0 . 22 . . . none . . PASS Atlas-SNP RAG2 5897 hgsc.bcm.edu hg19 11 36615488 36615488 + Silent SNP A A T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 RAG2,NS,carcinoma,0,1 RAG2 NM_001243785 exon3 c.T231A p.T77T TGTGCAAGTGGCT . 132.0 39.0 89.0 0.0 . 92 . . . none . . PASS Atlas-SNP ASRGL1 80150 hgsc.bcm.edu hg19 11 62156671 62156671 + Silent SNP A A T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . ASRGL1 NM_001083926 exon5 c.A558T p.T186T CTCCACAGGCGGT . 81.0 25.0 61.0 0.0 . 25 . . . none . . PASS Atlas-SNP PHLDB1 23187 hgsc.bcm.edu hg19 11 118526375 118526375 + Missense_Mutation SNP A A T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . PHLDB1 NM_001144758 exon21 c.A3935T p.Y1312F TGTACTACGACCA . 42.0 15.0 22.0 0.0 . 103 . . . none . . PASS Atlas-SNP H1FNT 341567 hgsc.bcm.edu hg19 12 48723566 48723566 + Silent SNP G G A novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . H1FNT NM_181788 exon1 c.G492A p.A164A CAAGGCGGCCAGG . 93.0 28.0 152.0 0.0 . 30 . . . none . . PASS Atlas-SNP FBRSL1 57666 hgsc.bcm.edu hg19 12 133158030 133158030 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . FBRSL1 NM_001142641 exon14 c.G1969A p.A657T GGTGCCGCCCATC . 124.0 42.0 224.0 0.0 . 47 . . . none . . PASS Atlas-SNP GABPB1 2553 hgsc.bcm.edu hg19 15 50593523 50593523 + Missense_Mutation SNP C C G novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . GABPB1 NM_016654 exon5 c.G514C p.D172H CAGTGTCAGGACT . 87.0 33.0 90.0 0.0 . 33 . . . none . . PASS Atlas-SNP KIAA0101 9768 hgsc.bcm.edu hg19 15 64668943 64668943 + Nonsense_Mutation SNP T T A novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . KIAA0101 NM_014736 exon3 c.A289T p.K97X CTTACTTTCTCTT . 112.0 28.0 110.0 0.0 . 8 . . . none . . PASS Atlas-SNP ABCA3 21 hgsc.bcm.edu hg19 16 2329051 2329051 + Silent SNP G G A rs367951064 alternate_allele TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . ABCA3 NM_001089 exon29 c.C4440T p.Y1480Y CCGAGCGTACATG . 89.0 26.0 102.0 0.0 . 176 . . . alt . . PASS Atlas-SNP SRCAP 10847 hgsc.bcm.edu hg19 16 30732250 30732250 + Silent SNP C C T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . SRCAP NM_006662 exon20 c.C3204T p.G1068G TCCTGGCCCTGTC . 50.0 6.0 52.0 0.0 . 298 . . . none . . PASS Atlas-SNP NFAT5 10725 hgsc.bcm.edu hg19 16 69724916 69724916 + Silent SNP A A T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . NFAT5 NM_138713 exon12 c.A1848T p.P616P CATACCAAGCAGT . 227.0 122.0 183.0 0.0 . 184 . . . none . . PASS Atlas-SNP KRT25 147183 hgsc.bcm.edu hg19 17 38907279 38907279 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . KRT25 NM_181534 exon5 c.C884A p.A295D TTCCGGGCTGAGG . 121.0 28.0 83.0 0.0 . 63 . . . none . . PASS Atlas-SNP KCNH6 81033 hgsc.bcm.edu hg19 17 61607776 61607776 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . KCNH6 NM_030779 exon4 c.A548G p.Q183R TCCCACAGTTCAC . 230.0 34.0 291.0 0.0 . 122 . . . none . . PASS Atlas-SNP SAP30BP 29115 hgsc.bcm.edu hg19 17 73700857 73700857 + Missense_Mutation SNP T T G novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . SAP30BP NM_013260 exon9 c.T623G p.M208R TTGAGATGGACAA . 122.0 16.0 111.0 0.0 . 30 . . . none . . PASS Atlas-SNP ZNF91 7644 hgsc.bcm.edu hg19 19 23545348 23545348 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . ZNF91 NM_003430 exon4 c.T433C p.C145R TGAGACACTGGTT . 105.0 39.0 129.0 0.0 . 349 . . . none . . PASS Atlas-SNP PPFIA3 8541 hgsc.bcm.edu hg19 19 49631270 49631270 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . PPFIA3 NM_003660 exon2 c.G140T p.R47L CGCTGCGCGAGGC . 8.0 5.0 7.0 0.0 . 71 . . . none . . PASS Atlas-SNP PPFIA3 8541 hgsc.bcm.edu hg19 19 49631271 49631271 + Silent SNP C C T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . PPFIA3 NM_003660 exon2 c.C141T p.R47R GCTGCGCGAGGCA . 8.0 5.0 8.0 0.0 . 71 . . . none . . PASS Atlas-SNP CTSA 5476 hgsc.bcm.edu hg19 20 44520635 44520635 + Missense_Mutation SNP A A T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . CTSA NM_000308 exon3 c.A329T p.D110V CACTAGATGGGCT . 30.0 11.0 84.0 0.0 . 52 . . . none . . PASS Atlas-SNP KCNQ2 3785 hgsc.bcm.edu hg19 20 62044846 62044846 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 KCNQ2,NS,carcinoma,0,1 KCNQ2 NM_172107 exon15 c.G1720A p.G574S GGTGGCCGGCTGA . 192.0 70.0 350.0 0.0 . 201 . . . none . . PASS Atlas-SNP STIM1 6786 hgsc.bcm.edu hg19 11 4095775 4095788 + Frame_Shift_Del DEL AAGGTCCATCTGGA AAGGTCCATCTGGA - novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 AAGGTCCATCTGGA AAGGTCCATCTGGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . STIM1 NM_003156 exon7 c.834_847del p.278_283del . . 59.0 15.0 56.0 0.0 . 55 . 0.254237 0 none . . PASS Atlas-Indel,Pindel C10orf76 79591 hgsc.bcm.edu hg19 10 103717456 103717456 + Frame_Shift_Del DEL T T - novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . C10orf76 NM_024541 exon21 c.1530delT p.N510fs . . 52.0 16.0 44.0 0.0 . 48 . 0.307692 0 none . . PASS Atlas-Indel,Pindel CCDC146 57639 hgsc.bcm.edu hg19 7 76883839 76883844 + In_Frame_Del DEL ATCATC ATCATC - novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 ATCATC ATCATC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . CCDC146 NM_020879 exon5 c.465_470del p.155_157del . . 75.0 19.0 43.0 0.0 . 87 . 0.253333 0 none . . PASS Atlas-Indel,Pindel ANKRD30A 91074 hgsc.bcm.edu hg19 10 37478466 37478468 + In_Frame_Del DEL AAT AAT - novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 AAT AAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 ANKRD30A,NS,carcinoma,0,1 ANKRD30A NM_052997 exon25 c.2324_2326del p.775_776del . . 309.0 43.0 350.0 0.0 . 448 . 0.139159 0 none . . PASS Atlas-Indel,Pindel MLL5 55904 hgsc.bcm.edu hg19 7 104742528 104742541 + Frame_Shift_Del DEL AATACTGTACTTAC AATACTGTACTTAC - novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 AATACTGTACTTAC AATACTGTACTTAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . MLL5 NM_182931 exon17 c.2082_2095del p.694_699del . . 379.0 92.0 211.0 0.0 . 173 . 0.242744 0 none . . PASS Atlas-Indel,Pindel KRTAP5-4 387267 hgsc.bcm.edu hg19 11 1643025 1643025 + Frame_Shift_Del DEL C C - novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . KRTAP5-4 NM_001012709 exon1 c.300delC p.G100fs . . 189.0 19.0 260.0 0.0 . 78 . 0.100529 0 none . . PASS Atlas-INDEL ATP5H 10476 hgsc.bcm.edu hg19 17 73038343 73038343 + Frame_Shift_Del DEL G G - novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . ATP5H NM_006356 exon3 c.153delT p.A51fs . . 98.0 50.0 87.0 0.0 . 5 . 0.510204 0 none . . PASS Atlas-Indel,Pindel APC2 10297 hgsc.bcm.edu hg19 19 1465652 1465652 + Frame_Shift_Del DEL G G - novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . APC2 NM_005883 exon15 c.2351delC p.P784fs . . 102.0 28.0 160.0 0.0 . 50 . 0.27451 0 none . . PASS Atlas-Indel,Pindel VCPIP1 80124 hgsc.bcm.edu hg19 8 67577722 67577722 + Frame_Shift_Del DEL A A - novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . VCPIP1 NM_025054 exon1 c.1473delG p.L491fs . . 87.0 34.0 92.0 0.0 . 110 . 0.390805 0 none . . PASS Atlas-Indel,Pindel HERC3 8916 hgsc.bcm.edu hg19 4 89583701 89583701 + Frame_Shift_Del DEL A A - novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . HERC3 NM_014606 exon11 c.1265delC p.T422fs . . 149.0 46.0 125.0 0.0 . 82 . 0.308725 0 none . . PASS Atlas-Indel,Pindel ANKRD30A 91074 hgsc.bcm.edu hg19 10 37442571 37442573 + In_Frame_Del DEL AAT AAT - novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 AAT AAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 ANKRD30A,colon,carcinoma,0,1 ANKRD30A NM_052997 exon13 c.1610_1612del p.537_538del . . 675.0 52.0 619.0 0.0 . 448 . 0.077037 0 none . . PASS Atlas-INDEL MSH4 4438 hgsc.bcm.edu hg19 1 76282215 76282218 + Frame_Shift_Del DEL AATA AATA - novel TCGA-2Z-A9JR-01A-12D-A42J-10 TCGA-2Z-A9JR-10A-01D-A42M-10 AATA AATA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a5edc5e-790b-41c7-b1c1-49106b297a3d dea33a63-ced9-4e0a-a451-ffb60520dc94 . MSH4 NM_002440 exon6 c.972_975del p.324_325del . . 320.0 66.0 254.0 0.0 . 147 . 0.206 . none . . PASS Pindel