Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
C1orf86	199990	hgsc.bcm.edu	hg19	1	2116880	2116880	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	C1orf86	NM_001146310	exon8	c.A530T	p.E177V	CACATCTCAGACG	.	192.0	168.0	317.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD13C	81573	hgsc.bcm.edu	hg19	1	70819813	70819813	+	Silent	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	ANKRD13C	NM_030816	exon1	c.C279T	p.A93A	CAGAAGGGCCGGG	.	92.0	79.0	91.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
FCER1A	2205	hgsc.bcm.edu	hg19	1	159277544	159277544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	FCER1A	NM_002001	exon6	c.G596A	p.R199H	CTCCGCGTGAGAA	.	95.0	5.0	97.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
ASAP2	8853	hgsc.bcm.edu	hg19	2	9528626	9528626	+	Silent	SNP	C	C	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	ASAP2	NM_001135191	exon22	c.C2334T	p.A778A	TGCAGCCCCCAGC	.	111.0	54.0	192.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC121	79635	hgsc.bcm.edu	hg19	2	27850763	27850763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	CCDC121	NM_001142683	exon2	c.G390T	p.R130S	AAGGAGCCTTCTG	.	80.0	24.0	90.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
IL1RL2	8808	hgsc.bcm.edu	hg19	2	102808484	102808484	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	IL1RL2	NM_003854	exon4	c.G393C	p.E131D	AGATGAGTACAAG	.	316.0	147.0	372.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	hg19	2	160289282	160289282	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	BAZ2B	NM_013450	exon9	c.A1886T	p.D629V	CTGTCATCAGATT	.	56.0	22.0	74.0	0.0	.	196	.	.	.	none	.	.	PASS	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	hg19	2	160289383	160289383	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	BAZ2B	NM_013450	exon9	c.T1785A	p.D595E	GTCTGAATCTGTT	.	64.0	25.0	98.0	0.0	.	196	.	.	.	none	.	.	PASS	Atlas-SNP
SLC4A10	57282	hgsc.bcm.edu	hg19	2	162762260	162762260	+	Silent	SNP	C	C	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	SLC4A10	NM_001178015	exon15	c.C1860T	p.I620I	CTACATCACTCGG	.	132.0	58.0	145.0	0.0	.	309	.	.	.	none	.	.	PASS	Atlas-SNP
ITGA6	3655	hgsc.bcm.edu	hg19	2	173352755	173352755	+	Silent	SNP	A	A	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	ITGA6	NM_000210	exon18	c.A2391G	p.L797L	GCTTTTATCGGTC	.	150.0	65.0	212.0	0.0	.	171	.	.	.	none	.	.	PASS	Atlas-SNP
NFE2L2	4780	hgsc.bcm.edu	hg19	2	178098799	178098799	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	NFE2L2,NS,carcinoma,0,9	NFE2L2	NM_006164	exon2	c.A246C	p.E82D	GAGAAATTCACCT	.	58.0	21.0	70.0	0.0	.	225	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179470170	179470170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	TTN	NM_001267550	exon279	c.C53852A	p.P17951H	TTAAGAGGTAGGG	.	101.0	11.0	149.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210681762	210681762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	UNC80_ENST00000439458,caecum,carcinoma,0,1	UNC80	NM_182587	exon10	c.C1465T	p.R489C	CCCACGCGCAGCA	.	67.0	10.0	109.0	0.0	.	280	.	.	.	none	.	.	PASS	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210791711	210791711	+	Splice_Site	SNP	G	G	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	UNC80	NM_032504	exon35	c.5608+1G>T	.	TAGCAGGTACAGT	.	63.0	28.0	69.0	0.0	.	280	.	.	.	none	.	.	PASS	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47144870	47144870	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	SETD2	NM_014159	exon7	c.A4883C	p.N1628T	CTGTGATTCATGA	.	129.0	75.0	134.0	0.0	.	721	.	.	.	none	.	.	PASS	Atlas-SNP
PBRM1	55193	hgsc.bcm.edu	hg19	3	52598065	52598065	+	Splice_Site	SNP	C	C	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	PBRM1	NM_018313	exon25	c.3800+1G>A	.	GCTTTACCTGAAG	.	57.0	17.0	71.0	0.0	.	1252	.	.	.	none	.	.	PASS	Atlas-SNP
PBRM1	55193	hgsc.bcm.edu	hg19	3	52643768	52643768	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	PBRM1_ENST00000356770,colon,carcinoma,0,5	PBRM1	NM_018313	exon17	c.C2128T	p.R710X	GACTTCGAATTTT	.	205.0	126.0	184.0	0.0	.	1252	.	.	.	none	.	.	PASS	Atlas-SNP
TOMM70A	9868	hgsc.bcm.edu	hg19	3	100093911	100093911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	TOMM70A	NM_014820	exon7	c.C1178T	p.A393V	TCAGCAGCCATGT	.	95.0	29.0	102.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
ACAD11	84129	hgsc.bcm.edu	hg19	3	132361614	132361614	+	Silent	SNP	C	C	T	rs144139484		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	ACAD11	NM_032169	exon3	c.G282A	p.L94L	TGAAAACAAGGCT	.	430.0	264.0	404.0	0.0	.	78	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
LSG1	55341	hgsc.bcm.edu	hg19	3	194380833	194380833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	LSG1	NM_018385	exon6	c.G551A	p.R184Q	GGGTTTCGAGCAT	.	132.0	6.0	121.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48550800	48550800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	FRYL	NM_015030	exon40	c.G4795A	p.A1599T	TCACTGCTATGTT	.	208.0	87.0	270.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
GSTCD	79807	hgsc.bcm.edu	hg19	4	106744194	106744194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	GSTCD	NM_001031720	exon6	c.G1324T	p.G442C	AAACCTGGTGACA	.	136.0	56.0	178.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187539082	187539082	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	FAT1	NM_005245	exon10	c.A8658C	p.K2886N	AACCACTTTAATC	.	79.0	26.0	102.0	0.0	.	500	.	.	.	none	.	.	PASS	Atlas-SNP
CDH18	1016	hgsc.bcm.edu	hg19	5	19473699	19473699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	CDH18	NM_004934	exon13	c.C2009T	p.A670V	TCAAAGGCCTCTG	.	101.0	36.0	104.0	0.0	.	561	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO4	26272	hgsc.bcm.edu	hg19	5	41925546	41925546	+	Silent	SNP	T	T	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	FBXO4	NM_033484	exon1	c.T135A	p.R45R	GGCGCGTACGACC	.	288.0	137.0	242.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
NNT	23530	hgsc.bcm.edu	hg19	5	43628360	43628360	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	NNT	NM_182977	exon7	c.A835C	p.K279Q	GACTTGAAGGAAT	.	257.0	134.0	174.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
PELO	53918	hgsc.bcm.edu	hg19	5	52096713	52096713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	PELO	NM_015946	exon2	c.A485G	p.K162R	GGGCCAAGGTGGA	.	198.0	86.0	125.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
DMXL1	1657	hgsc.bcm.edu	hg19	5	118582763	118582763	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	DMXL1	NM_005509	exon43	c.A8933C	p.N2978T	TTAGAAATATTGG	.	146.0	67.0	126.0	0.0	.	268	.	.	.	none	.	.	PASS	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	hg19	6	16327888	16327888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	ATXN1	NM_001128164	exon7	c.G654T	p.Q218H	CTGCTGCTGCTGC	.	63.0	19.0	40.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
FLOT1	10211	hgsc.bcm.edu	hg19	6	30698809	30698809	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	FLOT1	NM_005803	exon9	c.G792C	p.Q264H	TGCCACCTGCTGG	.	48.0	22.0	29.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
GLTSCR1L	23506	hgsc.bcm.edu	hg19	6	42790539	42790539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	.	NM_015349	exon3	c.C47T	p.P16L	GAGACCCACAAGC	.	252.0	106.0	198.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
UBE3D	90025	hgsc.bcm.edu	hg19	6	83767689	83767689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	.	NM_198920	exon2	c.C130T	p.L44F	TCTGGAGTGAAGA	.	135.0	67.0	119.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
GJA10	84694	hgsc.bcm.edu	hg19	6	90604946	90604946	+	Silent	SNP	T	T	C	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	GJA10	NM_032602	exon1	c.T759C	p.D253D	TGAGGATGAAACA	.	98.0	45.0	74.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
EPM2A	7957	hgsc.bcm.edu	hg19	6	145948580	145948580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	EPM2A	NM_005670	exon4	c.A968G	p.K323R	CGAACCTTCCCAA	.	85.0	38.0	76.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
MEOX2	4223	hgsc.bcm.edu	hg19	7	15725803	15725803	+	Silent	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	MEOX2,caecum,carcinoma,0,1	MEOX2	NM_005924	exon1	c.C225T	p.H75H	ATGGTGGTGGTGG	.	71.0	3.0	52.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
PLEKHA8	84725	hgsc.bcm.edu	hg19	7	30092325	30092325	+	Silent	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	PLEKHA8	NM_001197027	exon7	c.G639A	p.R213R	TTGCAGGCAAATG	.	503.0	234.0	350.0	1.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
NPC1L1	29881	hgsc.bcm.edu	hg19	7	44560616	44560616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	NPC1L1	NM_001101648	exon13	c.C3055T	p.R1019W	TGGGCCGGTCGTT	.	103.0	7.0	100.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
DMTF1	9988	hgsc.bcm.edu	hg19	7	86813800	86813800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	DMTF1	NM_001142327	exon11	c.G908A	p.G303D	CACAGGGTGTGTC	.	153.0	70.0	97.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
HEPACAM2	253012	hgsc.bcm.edu	hg19	7	92821636	92821636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	HEPACAM2	NM_001039372	exon9	c.G1316T	p.G439V	TCTTGCCCCGATA	.	97.0	22.0	61.0	0.0	.	132	.	.	.	none	.	.	PASS	Atlas-SNP
GPC2	221914	hgsc.bcm.edu	hg19	7	99768943	99768943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	GPC2	NM_152742	exon9	c.C1427A	p.A476E	GTGGCCGCCCGGA	.	172.0	42.0	125.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
PLOD3	8985	hgsc.bcm.edu	hg19	7	100855146	100855146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	PLOD3	NM_001084	exon11	c.A1213G	p.I405V	TGAGGATACGCAG	.	105.0	53.0	91.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
NAPEPLD	222236	hgsc.bcm.edu	hg19	7	102760435	102760435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	NAPEPLD	NM_001122838	exon3	c.C530T	p.P177L	TCTATTGGAGGGA	.	176.0	77.0	120.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
PAXIP1	22976	hgsc.bcm.edu	hg19	7	154738247	154738247	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	PAXIP1	NM_007349	exon19	c.C3108A	p.C1036X	TTCTCGGCATAAA	.	256.0	107.0	154.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF10	9639	hgsc.bcm.edu	hg19	8	1814770	1814770	+	Splice_Site	SNP	T	T	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	ARHGEF10	NM_014629	exon6	c.622+2T>G	.	GGAGAGTAAGTTC	.	20.0	13.0	22.0	0.0	.	255	.	.	.	none	.	.	PASS	Atlas-SNP
MYOM2	9172	hgsc.bcm.edu	hg19	8	1998968	1998968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	MYOM2	NM_003970	exon2	c.G88A	p.D30N	CTGCTGGACGAAT	.	75.0	53.0	90.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
AP3M2	10947	hgsc.bcm.edu	hg19	8	42012262	42012262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	AP3M2	NM_001134296	exon3	c.T57G	p.H19Q	GAAACATTGGAAA	.	75.0	25.0	70.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
TRPA1	8989	hgsc.bcm.edu	hg19	8	72987583	72987583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	TRPA1	NM_007332	exon1	c.T62C	p.V21A	TCATAGACAACGC	.	39.0	12.0	22.0	0.0	.	256	.	.	.	none	.	.	PASS	Atlas-SNP
C9orf106	414318	hgsc.bcm.edu	hg19	9	132084554	132084554	+	Silent	SNP	C	C	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	C9orf106	NM_001012715	exon2	c.C462T	p.S154S	CGTTTCCCCAGCA	.	30.0	18.0	50.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
PGBD3	267004	hgsc.bcm.edu	hg19	10	50725003	50725003	+	Silent	SNP	A	A	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	PGBD3	NM_170753	exon2	c.A158A	p.Q53Q	CCTGGCAGATTAT	.	93.0	24.0	86.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM26	219623	hgsc.bcm.edu	hg19	10	63170397	63170397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	TMEM26	NM_178505	exon6	c.C790A	p.Q264K	CATCTTGTATGAA	.	217.0	136.0	198.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
DLG5	9231	hgsc.bcm.edu	hg19	10	79579728	79579728	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	DLG5	NM_004747	exon16	c.G3451C	p.E1151Q	CCCACTCCTGGAG	.	55.0	13.0	63.0	0.0	.	154	.	.	.	none	.	.	PASS	Atlas-SNP
C10orf131	100127889	hgsc.bcm.edu	hg19	10	97697946	97697946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	C10orf131	NM_001130446	exon8	c.G511A	p.G171S	TCTCCAGGTAACA	.	226.0	135.0	266.0	1.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
R3HCC1L	27291	hgsc.bcm.edu	hg19	10	99968077	99968077	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	C10orf28,colon,carcinoma,0,1	R3HCC1L	NM_001256620	exon4	c.G206C	p.R69P	AGGCTCGAAGACT	.	183.0	26.0	203.0	0.0	.	3	.	.	.	none	.	.	PASS	Atlas-SNP
C10orf137	26098	hgsc.bcm.edu	hg19	10	127411654	127411654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	C10orf137	NM_015608	exon3	c.A335T	p.D112V	CATATGACTTTAT	.	178.0	65.0	143.0	0.0	.	153	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM132A	54972	hgsc.bcm.edu	hg19	11	60703543	60703543	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	TMEM132A	NM_017870	exon11	c.G2239T	p.E747X	CCGCCCGAGCCCT	.	30.0	13.0	45.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
HEPHL1	341208	hgsc.bcm.edu	hg19	11	93754630	93754630	+	Silent	SNP	G	G	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	HEPHL1	NM_001098672	exon1	c.G96T	p.G32G	CATTGGGATTGTG	.	50.0	22.0	80.0	0.0	.	144	.	.	.	none	.	.	PASS	Atlas-SNP
MLL	4297	hgsc.bcm.edu	hg19	11	118352545	118352545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	MLL	NM_001197104	exon7	c.G3750T	p.E1250D	AAGAGAGGATCCT	.	165.0	80.0	236.0	0.0	.	548	.	.	.	none	.	.	PASS	Atlas-SNP
ERC1	23085	hgsc.bcm.edu	hg19	12	1192643	1192643	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	ERC1	NM_178039	exon3	c.A983C	p.E328A	CCGAGGAAGACCA	.	127.0	46.0	103.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
LRP6	4040	hgsc.bcm.edu	hg19	12	12301888	12301888	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	LRP6	NM_002336	exon14	c.A3194C	p.N1065T	TCTGGGTTTACCA	.	85.0	59.0	94.0	0.0	.	170	.	.	.	none	.	.	PASS	Atlas-SNP
IFNG	3458	hgsc.bcm.edu	hg19	12	68551700	68551700	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	IFNG	NM_000619	exon3	c.A359C	p.N120T	GAATAATTAGTCA	.	74.0	43.0	85.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
ATXN2	6311	hgsc.bcm.edu	hg19	12	111893835	111893835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	ATXN2	NM_002973	exon23	c.C3742A	p.Q1248K	TTACCTGAGGTAC	.	177.0	106.0	153.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
OAS3	4940	hgsc.bcm.edu	hg19	12	113405314	113405314	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	OAS3	NM_006187	exon13	c.C2781G	p.F927L	CTGCTTCACAGAG	.	137.0	44.0	155.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
BRI3BP	140707	hgsc.bcm.edu	hg19	12	125509745	125509745	+	Silent	SNP	C	C	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	BRI3BP	NM_080626	exon3	c.C525T	p.H175H	CCTGCACAAGTAC	.	95.0	32.0	75.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
SPERT	220082	hgsc.bcm.edu	hg19	13	46288259	46288259	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	SPERT	NM_152719	exon3	c.C1099T	p.Q367X	GCGCTGCAGGCCC	.	127.0	59.0	111.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
INTS6	26512	hgsc.bcm.edu	hg19	13	51952390	51952390	+	Silent	SNP	A	A	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	INTS6	NM_012141	exon12	c.T1587A	p.V529V	CAAAGCAACTTGG	.	174.0	86.0	111.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
EML5	161436	hgsc.bcm.edu	hg19	14	89093338	89093338	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	EML5	NM_183387	exon34	c.A4584C	p.E1528D	TCGGAATTCTGCC	.	77.0	24.0	68.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105406085	105406085	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	AHNAK2	NM_138420	exon7	c.T15703A	p.F5235I	CAAGGAACTCTTT	.	55.0	39.0	72.0	0.0	.	719	.	.	.	none	.	.	PASS	Atlas-SNP
GCOM1	145781	hgsc.bcm.edu	hg19	15	57967233	57967233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	GCOM1	NM_001018090	exon12	c.G1271T	p.R424I	AAACCAGAGAGAT	.	117.0	48.0	196.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	hg19	16	2814199	2814199	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	SRRM2	NM_016333	exon11	c.G3670T	p.E1224X	ACAAAAGAGCAAA	.	110.0	65.0	115.0	0.0	.	263	.	.	.	none	.	.	PASS	Atlas-SNP
SCARF1	8578	hgsc.bcm.edu	hg19	17	1543778	1543778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	SCARF1	NM_145350	exon5	c.A974G	p.H325R	TGACAGTGGCCAG	.	155.0	43.0	156.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
CORO6	84940	hgsc.bcm.edu	hg19	17	27943974	27943974	+	Silent	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	CORO6	NM_032854	exon6	c.C840T	p.I280I	GTAGACGATGCTG	.	90.0	58.0	85.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
MYO1D	4642	hgsc.bcm.edu	hg19	17	30932207	30932207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	MYO1D,colon,carcinoma,0,1	MYO1D	NM_015194	exon21	c.C2762T	p.T921M	TCTTTCGTATGGA	.	140.0	10.0	115.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
CACNB1	782	hgsc.bcm.edu	hg19	17	37340296	37340296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	CACNB1	NM_199247	exon10	c.C1021T	p.R341C	TGGAGCGTGTGTT	.	61.0	41.0	73.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
SCRN2	90507	hgsc.bcm.edu	hg19	17	45916327	45916327	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	SCRN2	NM_138355	exon5	c.T602G	p.I201S	GCCGAGATGTCCG	.	55.0	33.0	54.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA8	10351	hgsc.bcm.edu	hg19	17	66915445	66915445	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	ABCA8	NM_007168	exon13	c.A1785C	p.K595N	TACCTCTTTATCC	.	49.0	14.0	57.0	0.0	.	213	.	.	.	none	.	.	PASS	Atlas-SNP
UBE2O	63893	hgsc.bcm.edu	hg19	17	74391863	74391863	+	Silent	SNP	C	C	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	UBE2O	NM_022066	exon15	c.G2889A	p.A963A	CAGCAGCGCCATC	.	57.0	21.0	66.0	0.0	.	207	.	.	.	none	.	.	PASS	Atlas-SNP
WDR18	57418	hgsc.bcm.edu	hg19	19	991092	991092	+	Silent	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	WDR18	NM_024100	exon6	c.G753A	p.R251R	ACAGAGGGAGAGG	.	73.0	44.0	88.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF556	80032	hgsc.bcm.edu	hg19	19	2877861	2877861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	ZNF556	NM_024967	exon4	c.T905C	p.F302S	CATCCTTTCAACG	.	135.0	78.0	145.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
PNPLA6	10908	hgsc.bcm.edu	hg19	19	7623951	7623951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	PNPLA6	NM_001166111	exon30	c.G3643T	p.V1215F	GAGGTTGTCAAGT	.	63.0	22.0	93.0	0.0	.	163	.	.	.	none	.	.	PASS	Atlas-SNP
TMED1	11018	hgsc.bcm.edu	hg19	19	10945735	10945735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	TMED1	NM_006858	exon3	c.A340G	p.I114V	CGGAGATGGTGCT	.	99.0	30.0	83.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF675	171392	hgsc.bcm.edu	hg19	19	23836072	23836072	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	ZNF675	NM_138330	exon4	c.A1663C	p.K555Q	TTTTTTTATGTTT	.	92.0	63.0	87.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
RPS16	6217	hgsc.bcm.edu	hg19	19	39923961	39923961	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	RPS16	NM_001020	exon5	c.G393C	p.K131N	TCCAAACTTTTTG	.	130.0	84.0	102.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	hg19	19	41072264	41072264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	SPTBN4	NM_020971	exon30	c.C6335T	p.T2112M	TGACCACGGTCAG	.	63.0	36.0	47.0	0.0	.	213	.	.	.	none	.	.	PASS	Atlas-SNP
BCKDHA	593	hgsc.bcm.edu	hg19	19	41928639	41928639	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	BCKDHA	NM_000709	exon7	c.A959T	p.E320V	TGGCAGAGAACCA	.	37.0	16.0	38.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
GLTSCR1	29998	hgsc.bcm.edu	hg19	19	48205408	48205408	+	Silent	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	GLTSCR1	NM_015711	exon15	c.G4419A	p.K1473K	TGCCAAGCGGCGC	.	62.0	41.0	62.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
FOXA2	3170	hgsc.bcm.edu	hg19	20	22563153	22563153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	FOXA2,caecum,carcinoma,0,1	FOXA2	NM_021784	exon2	c.C727T	p.P243S	AGTCAGGGTGCAG	.	134.0	63.0	116.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
ARFGEF2	10564	hgsc.bcm.edu	hg19	20	47648608	47648608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	ARFGEF2	NM_006420	exon38	c.T5086C	p.Y1696H	CTTGCCTATTTCA	.	102.0	47.0	84.0	0.0	.	160	.	.	.	none	.	.	PASS	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	hg19	21	46900748	46900748	+	Silent	SNP	T	T	C	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	COL18A1	NM_030582	exon12	c.T2127C	p.G709G	CGAGGGTCCCCCC	.	78.0	36.0	111.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
CHEK2	11200	hgsc.bcm.edu	hg19	22	29121248	29121248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	CHEK2	NM_001005735	exon4	c.C556A	p.H186N	GAAAGTGTTTCTT	.	86.0	75.0	147.0	0.0	.	438	.	.	.	none	.	.	PASS	Atlas-SNP
CSF2RB	1439	hgsc.bcm.edu	hg19	22	37331470	37331470	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	CSF2RB	NM_000395	exon11	c.A1393G	p.I465V	TGTGGCATCTACG	.	61.0	53.0	64.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
RANGAP1	5905	hgsc.bcm.edu	hg19	22	41650402	41650402	+	Silent	SNP	C	C	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	RANGAP1,NS,carcinoma,0,2	RANGAP1	NM_002883	exon11	c.G1170A	p.E390E	CTCCTCCTCTTCT	.	47.0	5.0	45.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
STAG2	10735	hgsc.bcm.edu	hg19	X	123205104	123205104	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	STAG2	NM_001042749	exon25	c.C2464T	p.Q822X	TCATTGCAGTCTG	.	43.0	40.0	66.0	0.0	.	309	.	.	.	none	.	.	PASS	Atlas-SNP
UNC13D	201294	hgsc.bcm.edu	hg19	17	73832109	73832109	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	UNC13D	NM_199242	exon17	c.1529delA	p.D510fs	.	.	66.0	22.0	84.0	0.0	.	68	.	0.333333	0	none	.	.	PASS	Atlas-Indel,Pindel
ARMC3	219681	hgsc.bcm.edu	hg19	10	23287144	23287145	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	ARMC3	NM_173081	exon11	c.1243_1244insT	p.I415fs	.	.	76.0	53.0	82.0	0.0	.	102	.	0.697368	0	none	.	.	PASS	Atlas-Indel,Pindel
PDPR	55066	hgsc.bcm.edu	hg19	16	70190605	70190606	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	PDPR	NM_017990	exon19	c.2463_2464insA	p.S821fs	.	.	135.0	14.0	117.0	0.0	.	66	.	0.103704	0	none	.	.	PASS	Atlas-INDEL
DNAH10	196385	hgsc.bcm.edu	hg19	12	124323139	124323140	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	DNAH10_same_name,NS,carcinoma,0,6	DNAH10	NM_207437	exon28	c.4685_4686insA	p.R1562fs	.	.	119.0	28.0	90.0	0.0	.	888	.	0.235294	0	none	.	.	PASS	Atlas-Indel,Pindel
TSC1	7248	hgsc.bcm.edu	hg19	9	135804182	135804183	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	TSC1	NM_000368	exon3	c.78_79del	p.26_27del	.	.	39.0	15.0	50.0	0.0	.	167	.	0.384615	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF841	284371	hgsc.bcm.edu	hg19	19	52570490	52570491	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	ZNF841	NM_001136499	exon7	c.645_646insA	p.N215fs	.	.	89.0	27.0	69.0	0.0	.	183	.	0.303371	0	none	.	.	PASS	Atlas-Indel,Pindel
HSP90AA1	3320	hgsc.bcm.edu	hg19	14	102551272	102551273	+	Frame_Shift_Ins	INS	-	-	TTCT	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	HSP90AA1	NM_001017963	exon6	c.1093_1094insAGAA	p.E365fs	.	.	158.0	30.0	148.0	0.0	.	65	.	0.189873	0	none	.	.	PASS	Atlas-Indel,Pindel
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77776566	77776571	+	In_Frame_Del	DEL	CTTCTC	CTTCTC	-	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	CTTCTC	CTTCTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	ZFHX4,NS,carcinoma,0,1	ZFHX4	NM_024721	exon11	c.10615_10620del	p.3539_3540del	.	.	146.0	74.0	121.0	0.0	.	878	.	0.506849	0	none	.	.	PASS	Atlas-Indel,Pindel
LUC7L3	51747	hgsc.bcm.edu	hg19	17	48827997	48827998	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	LUC7L3	NM_006107	exon10	c.1274_1275insT	p.S425fs	.	.	297.0	93.0	296.0	0.0	.	32	.	0.313131	0	none	.	.	PASS	Atlas-Indel,Pindel
RAB26	25837	hgsc.bcm.edu	hg19	16	2203146	2203146	+	Splice_Site	DEL	G	G	-	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	RAB26	NM_014353	exon8	c.592-2G>-	.	.	.	117.0	34.0	144.0	0.0	.	9	.	0.290598	0	none	.	.	PASS	Atlas-Indel,Pindel
KLF6	1316	hgsc.bcm.edu	hg19	10	3824256	3824257	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-4A-A93X-01A-11D-A36X-10	TCGA-4A-A93X-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ecd194d-3286-4363-9701-6427c66e103c	581486c1-6d50-4794-a2c8-693606b711ff	.	KLF6	NM_001300	exon2	c.253_254insT	p.P85fs	.	.	99.0	35.0	84.0	0.0	.	38	.	0.354	.	none	.	.	PASS	Pindel