Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm ATP13A2 23400 hgsc.bcm.edu hg19 1 17328590 17328590 + Missense_Mutation SNP A A C novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . ATP13A2 NM_022089 exon8 c.T644G p.I215S CCGTAAATGGCCT . 277.0 85.0 227.0 0.0 . 85 . . . none . . PASS Atlas-SNP RPA2 6118 hgsc.bcm.edu hg19 1 28240584 28240584 + Missense_Mutation SNP T T G novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . RPA2 NM_002946 exon2 c.A107C p.E36A TTCTTTTCGGCTT . 99.0 27.0 97.0 0.0 . 34 . . . none . . PASS Atlas-SNP DENND2C 163259 hgsc.bcm.edu hg19 1 115143493 115143493 + Missense_Mutation SNP G G A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . DENND2C NM_001256404 exon14 c.C1904T p.A635V CCAGGAGCTGGGA . 116.0 28.0 136.0 0.0 . 105 . . . none . . PASS Atlas-SNP RGL1 23179 hgsc.bcm.edu hg19 1 183876147 183876147 + Missense_Mutation SNP T T G novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . RGL1 NM_015149 exon15 c.T1579G p.Y527D CTCAGCTATGCCC . 63.0 17.0 59.0 0.0 . 91 . . . none . . PASS Atlas-SNP EPCAM 4072 hgsc.bcm.edu hg19 2 47601159 47601159 + Missense_Mutation SNP A A C novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . EPCAM NM_002354 exon3 c.A397C p.I133L ACTGAAATAACCT . 115.0 34.0 134.0 0.0 . 27 . . . none . . PASS Atlas-SNP SMEK2 57223 hgsc.bcm.edu hg19 2 55826141 55826141 + Missense_Mutation SNP T T G novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . SMEK2 NM_001122964 exon4 c.A332C p.Q111P AGGTCCTGTGTGA . 50.0 11.0 29.0 0.0 . 86 . . . none . . PASS Atlas-SNP STARD7 56910 hgsc.bcm.edu hg19 2 96852507 96852507 + Missense_Mutation SNP G G T rs114169229 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . STARD7 NM_020151 exon8 c.C1074A p.N358K GCCCTCGTTCTTT . 104.0 32.0 110.0 0.0 . 49 . . . alt G|0.998;A|0.002 . PASS Atlas-SNP CCDC148 130940 hgsc.bcm.edu hg19 2 159170296 159170296 + Missense_Mutation SNP T T C novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . CCDC148 NM_138803 exon8 c.A875G p.Y292C GGAAAATATCTTT . 99.0 32.0 68.0 0.0 . 64 . . . none . . PASS Atlas-SNP SP3 6670 hgsc.bcm.edu hg19 2 174829164 174829164 + Missense_Mutation SNP T T C novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . SP3 NM_001172712 exon2 c.A125G p.N42S GCACCGTTTCCGT . 30.0 7.0 41.0 0.0 . 82 . . . none . . PASS Atlas-SNP NDUFA10 4705 hgsc.bcm.edu hg19 2 240954246 240954246 + Silent SNP G G A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . NDUFA10 NM_004544 exon5 c.C579T p.V193V GATGGTGACGCTC . 134.0 33.0 111.0 0.0 . 40 . . . none . . PASS Atlas-SNP SETMAR 6419 hgsc.bcm.edu hg19 3 4355443 4355443 + Missense_Mutation SNP G G C novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . SETMAR NM_006515 exon2 c.G1018C p.E340Q ACCCTTGAGGTGA . 91.0 29.0 76.0 0.0 . 30 . . . none . . PASS Atlas-SNP CACNA1D 776 hgsc.bcm.edu hg19 3 53694259 53694259 + Silent SNP C C A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . CACNA1D NM_001128840 exon5 c.C723A p.A241A CCGTGCCTTTCGA . 95.0 29.0 112.0 0.0 . 324 . . . none . . PASS Atlas-SNP QTRTD1 79691 hgsc.bcm.edu hg19 3 113786834 113786834 + Missense_Mutation SNP G G A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . QTRTD1 NM_001256835 exon4 c.G293A p.G98D ATACAGGCATGCC . 71.0 24.0 74.0 0.0 . 29 . . . none . . PASS Atlas-SNP MYLK 4638 hgsc.bcm.edu hg19 3 123452791 123452791 + Missense_Mutation SNP C C T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . MYLK NM_053025 exon10 c.G1052A p.R351K TGAACTCTTGCGG . 359.0 122.0 312.0 0.0 . 224 . . . none . . PASS Atlas-SNP CCDC14 64770 hgsc.bcm.edu hg19 3 123663747 123663747 + Missense_Mutation SNP T T G novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . CCDC14 NM_022757 exon8 c.A1313C p.E438A GCTATCTCAACTT . 168.0 47.0 162.0 0.0 . 97 . . . none . . PASS Atlas-SNP CEP135 9662 hgsc.bcm.edu hg19 4 56841058 56841058 + Missense_Mutation SNP C C T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . CEP135 NM_025009 exon11 c.C1396T p.H466Y CTCCAACATATAA . 309.0 100.0 334.0 0.0 . 115 . . . none . . PASS Atlas-SNP C4orf22 255119 hgsc.bcm.edu hg19 4 81256926 81256926 + Missense_Mutation SNP G G C novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f C4orf22,NS,carcinoma,0,1 C4orf22 NM_152770 exon1 c.G4C p.D2H GCAATGGATCAGG . 38.0 9.0 29.0 0.0 . 35 . . . none . . PASS Atlas-SNP ELF2 1998 hgsc.bcm.edu hg19 4 140046428 140046428 + Missense_Mutation SNP G G T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . ELF2 NM_201999 exon3 c.C128A p.A43D AATCTGGCACTTG . 89.0 13.0 108.0 0.0 . 43 . . . none . . PASS Atlas-SNP WDR17 116966 hgsc.bcm.edu hg19 4 177098210 177098210 + Missense_Mutation SNP C C A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . WDR17 NM_170710 exon29 c.C3568A p.Q1190K TTCAGTCAGCTAT . 84.0 20.0 97.0 0.0 . 198 . . . none . . PASS Atlas-SNP MLF1IP 79682 hgsc.bcm.edu hg19 4 185637572 185637572 + Silent SNP G G A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . MLF1IP NM_024629 exon6 c.C597T p.N199N TGCCAAGTTCTCT . 110.0 38.0 92.0 0.0 . 33 . . . none . . PASS Atlas-SNP SEMA5A 9037 hgsc.bcm.edu hg19 5 9052121 9052121 + Silent SNP C C G novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . SEMA5A NM_003966 exon20 c.G2709C p.S903S CCAGTCCGACCAC . 142.0 48.0 140.0 0.0 . 236 . . . none . . PASS Atlas-SNP HTR1A 3350 hgsc.bcm.edu hg19 5 63257506 63257506 + Nonsense_Mutation SNP G G T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . HTR1A NM_000524 exon1 c.C41A p.S14X GGTGGTGATGTGG . 224.0 71.0 197.0 0.0 . 128 . . . none . . PASS Atlas-SNP SEPT8 23176 hgsc.bcm.edu hg19 5 132099512 132099512 + Silent SNP G G T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . SEPT8 NM_015146 exon4 c.C420A p.R140R GAGCGAGCGGCGG . 126.0 36.0 109.0 0.0 . 28 . . . none . . PASS Atlas-SNP NEU1 4758 hgsc.bcm.edu hg19 6 31829963 31829963 + Silent SNP C C T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . NEU1 NM_000434 exon2 c.G165A p.Q55Q CAGCGGCTGCACC . 117.0 24.0 100.0 0.0 . 21 . . . none . . PASS Atlas-SNP PKHD1 5314 hgsc.bcm.edu hg19 6 51889838 51889838 + Silent SNP G G C novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . PKHD1 NM_170724 exon32 c.C4770G p.L1590L GGTCAAGAGGCTT . 73.0 19.0 71.0 0.0 . 927 . . . none . . PASS Atlas-SNP MB21D1 115004 hgsc.bcm.edu hg19 6 74161674 74161674 + Silent SNP A A G novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . MB21D1 NM_138441 exon1 c.T231C p.T77T GGCCCCAGTTGCG . 151.0 31.0 138.0 0.0 . 33 . . . none . . PASS Atlas-SNP CD164 8763 hgsc.bcm.edu hg19 6 109697298 109697298 + Missense_Mutation SNP C C T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . CD164 NM_006016 exon4 c.G349A p.V117M TTGGCACTGGAGT . 39.0 11.0 58.0 0.0 . 10 . . . none . . PASS Atlas-SNP STK17A 9263 hgsc.bcm.edu hg19 7 43663376 43663376 + Missense_Mutation SNP A A T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . STK17A NM_004760 exon6 c.A809T p.E270V AACAAGAAACATT . 71.0 17.0 65.0 0.0 . 31 . . . none . . PASS Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82465003 82465003 + Silent SNP G G A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . PCLO NM_014510 exon16 c.C14229T p.V4743V AACCATGACTTGA . 97.0 29.0 139.0 0.0 . 1506 . . . none . . PASS Atlas-SNP TRPV6 55503 hgsc.bcm.edu hg19 7 142574503 142574503 + Missense_Mutation SNP T T A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . TRPV6 NM_018646 exon5 c.A575T p.Q192L GAGTCCTGGGCCC . 92.0 27.0 84.0 0.0 . 108 . . . none . . PASS Atlas-SNP ABP1 26 hgsc.bcm.edu hg19 7 150554433 150554433 + Missense_Mutation SNP C C A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . ABP1 NM_001091 exon2 c.C875A p.P292H ACTTCCCCAGCCC . 63.0 16.0 60.0 0.0 . 92 . . . none . . PASS Atlas-SNP GFRA2 2675 hgsc.bcm.edu hg19 8 21608372 21608372 + Nonsense_Mutation SNP G G T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . GFRA2 NM_001495 exon4 c.C522A p.C174X CTTCTTGCAGTTG . 164.0 59.0 156.0 0.0 . 23 . . . none . . PASS Atlas-SNP ENTPD4 9583 hgsc.bcm.edu hg19 8 23294697 23294697 + Missense_Mutation SNP T T C novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . ENTPD4 NM_004901 exon10 c.A1124G p.D375G ATTTCATCTTTAA . 155.0 49.0 136.0 0.0 . 56 . . . none . . PASS Atlas-SNP NDUFB9 4715 hgsc.bcm.edu hg19 8 125562081 125562081 + Nonsense_Mutation SNP T T A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f NDUFB9,NS,carcinoma,0,1 NDUFB9 NM_005005 exon4 c.T488A p.L163X GTGATTTGCCCCC . 120.0 38.0 91.0 0.0 . 18 . . . none . . PASS Atlas-SNP NAPRT1 93100 hgsc.bcm.edu hg19 8 144657205 144657205 + Missense_Mutation SNP C C T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . NAPRT1 NM_145201 exon12 c.G1505A p.S502N AGTCGGCTCAGGG . 198.0 63.0 146.0 0.0 . 47 . . . none . . PASS Atlas-SNP PRSS3 5646 hgsc.bcm.edu hg19 9 33797999 33797999 + Missense_Mutation SNP A A G rs142141488 TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . PRSS3 NM_007343 exon3 c.A544G p.T182A GTGTCCACCATCT . 120.0 5.0 106.0 0.0 . 79 . . . weak . . PASS Atlas-SNP C9orf170 401535 hgsc.bcm.edu hg19 9 89763782 89763782 + Missense_Mutation SNP C C G novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . C9orf170 NM_001001709 exon1 c.C137G p.S46C TGGCCTCCTGCTC . 252.0 75.0 280.0 0.0 . 17 . . . none . . PASS Atlas-SNP OGN 4969 hgsc.bcm.edu hg19 9 95165578 95165578 + Missense_Mutation SNP A A G novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . OGN NM_033014 exon2 c.T112C p.F38L CTTCAAAATTATC . 118.0 35.0 107.0 0.0 . 26 . . . none . . PASS Atlas-SNP LRRC8A 56262 hgsc.bcm.edu hg19 9 131670150 131670150 + Missense_Mutation SNP A A T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . LRRC8A NM_001127244 exon3 c.A707T p.E236V AGAAGGAGGGGGA . 158.0 14.0 157.0 0.0 . 69 . . . none . . PASS Atlas-SNP ZNF438 220929 hgsc.bcm.edu hg19 10 31138561 31138561 + Missense_Mutation SNP T T G novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . ZNF438 NM_182755 exon7 c.A773C p.K258T TTAAATTTTTCAC . 96.0 31.0 84.0 0.0 . 90 . . . none . . PASS Atlas-SNP PANK1 53354 hgsc.bcm.edu hg19 10 91404533 91404533 + Missense_Mutation SNP G G A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . PANK1 NM_148977 exon1 c.C527T p.P176L TGGACTGGCGGCG . 30.0 10.0 34.0 0.0 . 35 . . . none . . PASS Atlas-SNP MXI1 4601 hgsc.bcm.edu hg19 10 112044605 112044605 + Missense_Mutation SNP A A T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . MXI1 NM_130439 exon6 c.A748T p.S250C GTTGAAAGCACAG . 87.0 27.0 79.0 0.0 . 17 . . . none . . PASS Atlas-SNP HSPA12A 259217 hgsc.bcm.edu hg19 10 118440687 118440687 + Missense_Mutation SNP G G T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . HSPA12A NM_025015 exon9 c.C1003A p.L335I CCTTAAGGTGTCC . 66.0 4.0 79.0 0.0 . 81 . . . none . . PASS Atlas-SNP NAP1L4 4676 hgsc.bcm.edu hg19 11 2970489 2970489 + Missense_Mutation SNP T T G novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . NAP1L4 NM_005969 exon15 c.A1128C p.X376Y CAAAAATTACACC . 560.0 166.0 603.0 0.0 . 39 . . . none . . PASS Atlas-SNP CLSTN3 9746 hgsc.bcm.edu hg19 12 7303653 7303653 + Missense_Mutation SNP A A T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . CLSTN3 NM_014718 exon16 c.A2521T p.N841Y CACAGAAACTCCA . 139.0 40.0 91.0 0.0 . 84 . . . none . . PASS Atlas-SNP ACSM4 341392 hgsc.bcm.edu hg19 12 7476144 7476144 + Silent SNP C C T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . ACSM4 NM_001080454 exon9 c.C1296T p.F432F TTTCTTCTCTAAA . 66.0 16.0 79.0 0.0 . 98 . . . none . . PASS Atlas-SNP KRT1 3848 hgsc.bcm.edu hg19 12 53069229 53069229 + Silent SNP G G A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . KRT1 NM_006121 exon9 c.C1683T p.S561S ACCTCCGGAGCCG . 36.0 16.0 4.0 0.0 . 110 . . . none . . PASS Atlas-SNP EEA1 8411 hgsc.bcm.edu hg19 12 93210107 93210107 + Missense_Mutation SNP C C A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . EEA1 NM_003566 exon15 c.G1798T p.D600Y CCTGGTCATGCAA . 152.0 46.0 197.0 0.0 . 104 . . . none . . PASS Atlas-SNP NCOR2 9612 hgsc.bcm.edu hg19 12 124846815 124846815 + Missense_Mutation SNP C C A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . NCOR2 NM_006312 exon24 c.G2957T p.R986L TCCTCCCGGGGGG . 26.0 11.0 35.0 0.0 . 475 . . . none . . PASS Atlas-SNP FBRSL1 57666 hgsc.bcm.edu hg19 12 133146786 133146786 + Silent SNP G G A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . FBRSL1 NM_001142641 exon7 c.G966A p.A322A CTTCGCGGGCCAC . 23.0 6.0 8.0 0.0 . 47 . . . none . . PASS Atlas-SNP METTL17 64745 hgsc.bcm.edu hg19 14 21463350 21463350 + Silent SNP T T A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . METTL17 NM_022734 exon10 c.T903A p.A301A AAAAGCTGGGCAC . 131.0 40.0 110.0 0.0 . 46 . . . none . . PASS Atlas-SNP CHD8 57680 hgsc.bcm.edu hg19 14 21868201 21868201 + Missense_Mutation SNP A A T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . CHD8 NM_001170629 exon24 c.T4756A p.Y1586N TCAGGTAGTATAG . 126.0 36.0 127.0 0.0 . 339 . . . none . . PASS Atlas-SNP CHD8 57680 hgsc.bcm.edu hg19 14 21868202 21868202 + Silent SNP G G A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . CHD8 NM_001170629 exon24 c.C4755T p.Y1585Y CAGGTAGTATAGC . 126.0 35.0 126.0 0.0 . 339 . . . none . . PASS Atlas-SNP WDHD1 11169 hgsc.bcm.edu hg19 14 55451547 55451547 + Silent SNP T T C novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . WDHD1 NM_007086 exon15 c.A1800G p.G600G TTGAACTCCAAGG . 491.0 166.0 479.0 0.0 . 82 . . . none . . PASS Atlas-SNP VRTN 55237 hgsc.bcm.edu hg19 14 74825395 74825395 + Missense_Mutation SNP G G A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . VRTN NM_018228 exon2 c.G1909A p.D637N GGCAGGGATGGCC . 105.0 30.0 92.0 0.0 . 79 . . . none . . PASS Atlas-SNP TJP1 7082 hgsc.bcm.edu hg19 15 30001031 30001031 + Missense_Mutation SNP T T C novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . TJP1 NM_003257 exon25 c.A4582G p.T1528A TTGGTGTGAATCG . 127.0 7.0 130.0 0.0 . 140 . . . none . . PASS Atlas-SNP PRTG 283659 hgsc.bcm.edu hg19 15 55930800 55930800 + Missense_Mutation SNP T T C novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . PRTG NM_173814 exon14 c.A2399G p.D800G AGCTGATCCACAT . 133.0 47.0 151.0 0.0 . 110 . . . none . . PASS Atlas-SNP CCNB2 9133 hgsc.bcm.edu hg19 15 59417066 59417066 + Missense_Mutation SNP G G A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . CCNB2 NM_004701 exon9 c.G1187A p.G396E TGATAGGAAGGTC . 105.0 35.0 84.0 0.0 . 23 . . . none . . PASS Atlas-SNP HERC1 8925 hgsc.bcm.edu hg19 15 64047449 64047449 + Nonsense_Mutation SNP C C A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . HERC1 NM_003922 exon6 c.G1609T p.E537X CTCCTTCACCCCA . 90.0 20.0 128.0 0.0 . 624 . . . none . . PASS Atlas-SNP EME2 197342 hgsc.bcm.edu hg19 16 1823724 1823724 + Missense_Mutation SNP G G A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . EME2 NM_001257370 exon2 c.G266A p.G89D ACGCCGGTGCCGA . 263.0 121.0 160.0 0.0 . 40 . . . none . . PASS Atlas-SNP GSPT1 2935 hgsc.bcm.edu hg19 16 11980375 11980375 + Silent SNP A A G novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . GSPT1 NM_002094 exon9 c.T1206C p.L402L TCCAGTAAGTCCT . 244.0 55.0 199.0 0.0 . 71 . . . none . . PASS Atlas-SNP ACSM2B 348158 hgsc.bcm.edu hg19 16 20570646 20570646 + Missense_Mutation SNP A A G novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f ACSM2B,NS,carcinoma,0,1 ACSM2B NM_182617 exon4 c.T301C p.C101R GGCCACAGGCTCC . 150.0 81.0 130.0 0.0 . 121 . . . none . . PASS Atlas-SNP EFNA2 1943 hgsc.bcm.edu hg19 19 1299934 1299934 + Missense_Mutation SNP T T C novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . EFNA2 NM_001405 exon4 c.T632C p.L211P CCCTCCTGGGTTC . 36.0 7.0 23.0 0.0 . 8 . . . none . . PASS Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9082415 9082415 + Missense_Mutation SNP T T A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . MUC16 NM_024690 exon1 c.A9400T p.T3134S TGGCTGTGGGTTC . 197.0 67.0 164.0 0.0 . 4315 . . . none . . PASS Atlas-SNP ARRDC2 27106 hgsc.bcm.edu hg19 19 18121498 18121498 + Missense_Mutation SNP T T G novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . ARRDC2 NM_015683 exon7 c.T1130G p.I377S CCTACATCCAAGA . 49.0 16.0 47.0 0.0 . 60 . . . none . . PASS Atlas-SNP CAPN12 147968 hgsc.bcm.edu hg19 19 39224978 39224978 + Missense_Mutation SNP T T C novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . CAPN12 NM_144691 exon16 c.A1796G p.Q599R AGCAGCTGCTCAC . 96.0 35.0 80.0 0.0 . 43 . . . none . . PASS Atlas-SNP ZNF135 7694 hgsc.bcm.edu hg19 19 58574844 58574844 + Missense_Mutation SNP C C G novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f ZNF135_ENST00000401053,NS,malignant_melanoma,0,2 ZNF135 NM_007134 exon3 c.C227G p.S76C TCATCTCCCTGCT . 90.0 28.0 99.0 0.0 . 159 . . . none . . PASS Atlas-SNP MYBL2 4605 hgsc.bcm.edu hg19 20 42315498 42315498 + Nonsense_Mutation SNP G G T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . MYBL2 NM_002466 exon5 c.G286T p.E96X GTCATCGAGCTGG . 72.0 27.0 79.0 0.0 . 82 . . . none . . PASS Atlas-SNP ZNF831 128611 hgsc.bcm.edu hg19 20 57767884 57767884 + Missense_Mutation SNP G G A novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . ZNF831 NM_178457 exon1 c.G1810A p.G604S GCGGGCGGCAGGA . 168.0 59.0 195.0 0.0 . 287 . . . none . . PASS Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765164 66765164 + Missense_Mutation SNP A A T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . AR NM_000044 exon1 c.A176T p.Q59L TGCAGCAGCAGCA . 119.0 6.0 56.0 0.0 . 249 . . . none . . PASS Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765167 66765167 + Missense_Mutation SNP A A T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . AR NM_000044 exon1 c.A179T p.Q60L AGCAGCAGCAGCA . 118.0 13.0 52.0 0.0 . 249 . . . none . . PASS Atlas-SNP MST4 0 hgsc.bcm.edu hg19 X 131207118 131207118 + Missense_Mutation SNP A A C novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . MST4 NM_016542 exon11 c.A1223C p.Q408P AATTTCAAAAGTA . 279.0 162.0 317.0 1.0 . 61 . . . none . . PASS Atlas-SNP COX3 5742 hgsc.bcm.edu hg19 MT 9301 9301 + Missense_Mutation SNP C C A rs9700408 bycluster;byhapmap;alternate_allele TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . . ENST00000362079 exon1 c.C95A p.A32D GCCTAGCCATGTG . 232.0 13.0 21.0 0.0 . . . . . alt G|1.000;|0.000 . PASS Atlas-SNP NPBWR2 2832 hgsc.bcm.edu hg19 20 62737462 62737473 + In_Frame_Del DEL GGCCCGCAGCCT GGCCCGCAGCCT - novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 GGCCCGCAGCCT GGCCCGCAGCCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . NPBWR2 NM_005286 exon1 c.713_724del p.238_242del . . 65.0 14.0 57.0 0.0 . 36 . 0.215385 0 none . . PASS Atlas-Indel,Pindel STAB1 23166 hgsc.bcm.edu hg19 3 52539392 52539395 + Frame_Shift_Del DEL CTGG CTGG - novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 CTGG CTGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . STAB1 NM_015136 exon14 c.1575_1578del p.525_526del . . 157.0 31.0 174.0 0.0 . 178 . 0.197452 0 none . . PASS Atlas-INDEL GLB1L3 112937 hgsc.bcm.edu hg19 11 134147653 134147653 + Frame_Shift_Del DEL C C - novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . GLB1L3 NM_001080407 exon3 c.208delA p.T70fs . . 139.0 52.0 126.0 0.0 . 102 . 0.374101 0 none . . PASS Atlas-Indel,Pindel NR3C1 2908 hgsc.bcm.edu hg19 5 142675051 142675052 + Frame_Shift_Del DEL AT AT - novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 AT AT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . NR3C1 NM_001024094 exon7 c.2000_2001del p.667_667del . . 79.0 30.0 70.0 0.0 . 124 . 0.379747 0 none . . PASS Atlas-Indel,Pindel VPS13C 54832 hgsc.bcm.edu hg19 15 62221902 62221902 + Frame_Shift_Del DEL A A - novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . VPS13C NM_020821 exon51 c.6085delG p.D2029fs . . 91.0 33.0 84.0 0.0 . 506 . 0.362637 0 none . . PASS Atlas-Indel,Pindel LPL 4023 hgsc.bcm.edu hg19 8 19809403 19809405 + In_Frame_Del DEL GCG GCG - novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 GCG GCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . LPL NM_000237 exon3 c.372_374del p.124_125del . . 159.0 52.0 143.0 0.0 . 78 . 0.327044 0 none . . PASS Atlas-Indel,Pindel TEFM 79736 hgsc.bcm.edu hg19 17 29226569 29226570 + Frame_Shift_Ins INS - - T novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . . NM_024683 exon4 c.701_702insA p.T234fs . . 192.0 56.0 186.0 0.0 . . . 0.291667 0 none . . PASS Atlas-Indel,Pindel STAB1 23166 hgsc.bcm.edu hg19 3 52539397 52539397 + Frame_Shift_Del DEL G G - novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . STAB1 NM_015136 exon14 c.1580delA p.E527fs . . 151.0 31.0 171.0 0.0 . 178 . 0.205298 0 none . . PASS Atlas-INDEL AHCTF1 25909 hgsc.bcm.edu hg19 1 247070993 247070993 + Frame_Shift_Del DEL C C - novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f AHCTF1,colon,carcinoma,0,1 AHCTF1 NM_015446 exon5 c.652delC p.R218fs . . 229.0 55.0 231.0 0.0 . 187 . 0.240175 0 none . . PASS Atlas-Indel,Pindel NOS2 4843 hgsc.bcm.edu hg19 17 26099337 26099346 + Frame_Shift_Del DEL GGGGTTGAAG GGGGTTGAAG - novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 GGGGTTGAAG GGGGTTGAAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . NOS2 NM_000625 exon14 c.1693_1702del p.565_568del . . 85.0 10.0 81.0 0.0 . 113 . 0.117647 0 none . . PASS Atlas-Indel,Pindel PAN2 9924 hgsc.bcm.edu hg19 12 56722345 56722360 + Frame_Shift_Del DEL CTGCCGAATATCATCA CTGCCGAATATCATCA - novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 CTGCCGAATATCATCA CTGCCGAATATCATCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . PAN2 NM_001127460 exon3 c.349_364del p.117_122del . . 97.0 17.0 86.0 0.0 . 107 . 0.175258 0 none . . PASS Atlas-Indel,Pindel MST4 0 hgsc.bcm.edu hg19 X 131207114 131207114 + Frame_Shift_Del DEL T T - novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . MST4 NM_016542 exon11 c.1218delA p.K406fs . . 290.0 160.0 326.0 0.0 . 61 . 0.551724 0 none . . PASS Atlas-Indel,Pindel MAN2A1 4124 hgsc.bcm.edu hg19 5 109183439 109183439 + Frame_Shift_Del DEL T T - novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . MAN2A1 NM_002372 exon19 c.2923delA p.I975fs . . 74.0 28.0 96.0 0.0 . 136 . 0.378378 0 none . . PASS Atlas-Indel,Pindel ALKBH5 54890 hgsc.bcm.edu hg19 17 18087657 18087680 + In_Frame_Del DEL GCCGCAGCCGCCGTAGCCGCCGCA GCCGCAGCCGCCGTAGCCGCCGCA - novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 GCCGCAGCCGCCGTAGCCGCCGCA GCCGCAGCCGCCGTAGCCGCCGCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . ALKBH5 NM_017758 exon1 c.99_122del p.33_41del . . 53.0 10.0 57.0 0.0 . 24 . 0.189 . none . . PASS Pindel STAB1 23166 hgsc.bcm.edu hg19 3 52539392 52539397 + In_Frame_Del DEL CTGGAG CTGGAG - novel TCGA-5P-A9JW-01A-11D-A42J-10 TCGA-5P-A9JW-10A-01D-A42M-10 CTGGAG CTGGAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 82cf23e0-e687-4cf2-b83f-732ce4279056 d59804af-3375-4351-a1ef-125b05396a6f . STAB1 NM_015136 exon14 c.1575_1580del p.525_527del . . 157.0 27.0 175.0 0.0 . 178 . 0.172 . none . . PASS Pindel