Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
MTOR	2475	hgsc.bcm.edu	hg19	1	11269473	11269473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	MTOR	NM_004958	exon25	c.C3697A	p.Q1233K	GATGCTGGTAAAT	.	77.0	4.0	63.0	0.0	.	327	.	.	.	none	.	.	PASS	Atlas-SNP
FAM131C	348487	hgsc.bcm.edu	hg19	1	16388654	16388654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	FAM131C,caecum,carcinoma,0,1	FAM131C	NM_182623	exon4	c.G208A	p.D70N	TGGAGTCGGACAG	.	103.0	15.0	119.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
HP1BP3	50809	hgsc.bcm.edu	hg19	1	21091954	21091954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	HP1BP3	NM_016287	exon8	c.G806A	p.R269H	CAAAGGCGAGTAA	.	117.0	35.0	102.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
COL8A2	1296	hgsc.bcm.edu	hg19	1	36564328	36564328	+	Silent	SNP	T	T	G	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	COL8A2	NM_005202	exon2	c.A954C	p.P318P	CAGTCCTGGCATC	.	82.0	21.0	75.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
TYW3	127253	hgsc.bcm.edu	hg19	1	75199100	75199100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	TYW3,NS,carcinoma,0,1	TYW3	NM_001162916	exon1	c.C172T	p.R58W	CTTGACCGGGTGA	.	62.0	3.0	47.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
PSMD4	5710	hgsc.bcm.edu	hg19	1	151238063	151238063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	PSMD4	NM_002810	exon6	c.G632T	p.S211I	ATCCCAGTGCTGA	.	83.0	23.0	95.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
SMG7	9887	hgsc.bcm.edu	hg19	1	183520249	183520249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	SMG7	NM_001174061	exon21	c.G3248A	p.S1083N	AGGCCAGCACTCC	.	124.0	28.0	101.0	0.0	.	165	.	.	.	none	.	.	PASS	Atlas-SNP
CAMK1G	57172	hgsc.bcm.edu	hg19	1	209778922	209778922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	CAMK1G	NM_020439	exon5	c.G338C	p.G113A	AGCGGGGTGTCTA	.	64.0	15.0	42.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
RHOU	58480	hgsc.bcm.edu	hg19	1	228879035	228879035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	RHOU	NM_021205	exon3	c.G325A	p.E109K	CAGGATGAATTTG	.	78.0	13.0	77.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245850297	245850297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	KIF26B	NM_018012	exon12	c.G4012A	p.D1338N	AGCCCCGACAACT	.	106.0	29.0	112.0	0.0	.	343	.	.	.	none	.	.	PASS	Atlas-SNP
PUM2	23369	hgsc.bcm.edu	hg19	2	20482914	20482914	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	PUM2	NM_015317	exon11	c.A1514G	p.Q505R	GGTGGCTGAGTGC	.	61.0	10.0	59.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
CIB4	130106	hgsc.bcm.edu	hg19	2	26805731	26805731	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	CIB4	NM_001029881	exon6	c.G489C	p.E163D	TTCAAACTCTGAG	.	69.0	18.0	88.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
SNX17	9784	hgsc.bcm.edu	hg19	2	27596784	27596784	+	Silent	SNP	G	G	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	SNX17	NM_014748	exon5	c.G378C	p.G126G	CAACGGGCAGAAA	.	72.0	22.0	118.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	hg19	2	125320891	125320891	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	CNTNAP5	NM_130773	exon11	c.T1744A	p.C582S	GCCACCTGCCACA	.	58.0	20.0	45.0	0.0	.	405	.	.	.	none	.	.	PASS	Atlas-SNP
UBR3	130507	hgsc.bcm.edu	hg19	2	170871867	170871867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	UBR3	NM_172070	exon30	c.T4444C	p.S1482P	AAAAGGTCTTGTT	.	44.0	16.0	73.0	0.0	.	182	.	.	.	none	.	.	PASS	Atlas-SNP
CFLAR	8837	hgsc.bcm.edu	hg19	2	202025647	202025647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	CFLAR	NM_003879	exon9	c.A1286G	p.Q429R	TCTCCCAGAAACT	.	72.0	20.0	66.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
ALS2CR8	79800	hgsc.bcm.edu	hg19	2	203817333	203817333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	ALS2CR8	NM_024744	exon6	c.C358T	p.P120S	ATTCCACCTACCC	.	89.0	23.0	94.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	hg19	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	KIF1A	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	127.0	16.0	78.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
RAF1	5894	hgsc.bcm.edu	hg19	3	12650333	12650333	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	RAF1	NM_002880	exon5	c.A513T	p.K171N	ATGAAATTTGTAG	.	131.0	38.0	136.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
ZDHHC23	254887	hgsc.bcm.edu	hg19	3	113673053	113673053	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	ZDHHC23	NM_173570	exon3	c.G668C	p.G223A	CCAAAGGGTTCCC	.	199.0	43.0	153.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
RAB6B	51560	hgsc.bcm.edu	hg19	3	133557104	133557104	+	Splice_Site	SNP	C	C	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	RAB6B	NM_016577	exon7	c.402-1G>A	.	ATCTGCCTAGAGA	.	54.0	18.0	42.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195511396	195511396	+	Missense_Mutation	SNP	G	G	T	rs201453005	bycluster;byfrequency;alternate_allele	TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	MUC4_ENST00000463781,NS,carcinoma,0,3	MUC4	NM_018406	exon2	c.C7055A	p.P2352H	TGAAGAGGGGTGG	.	113.0	7.0	83.0	0.0	.	1505	.	.	.	alt	G|0.991;A|0.008	.	PASS	Atlas-SNP
RNF212	285498	hgsc.bcm.edu	hg19	4	1066753	1066753	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	RNF212	NM_001131034	exon10	c.A803T	p.Q268L	GCCTGCTGGAACG	.	190.0	44.0	198.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
MTTP	4547	hgsc.bcm.edu	hg19	4	100534106	100534106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	MTTP,rectum,carcinoma,0,1	MTTP	NM_000253	exon16	c.G2026A	p.A676T	TTAATCGCAGCCA	.	49.0	2.0	41.0	0.0	.	127	.	.	.	none	.	.	PASS	Atlas-SNP
PDCD6	10016	hgsc.bcm.edu	hg19	5	306756	306756	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	PDCD6	NM_013232	exon4	c.G248C	p.S83T	ACTTCAGCGAGTT	.	77.0	19.0	76.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
FASTKD3	79072	hgsc.bcm.edu	hg19	5	7867443	7867443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	FASTKD3	NM_024091	exon2	c.A754G	p.T252A	CCGGGGTAAATGT	.	43.0	13.0	36.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
FYB	2533	hgsc.bcm.edu	hg19	5	39153579	39153579	+	Silent	SNP	G	G	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	FYB	NM_001243093	exon3	c.C1293A	p.P431P	GTTTCTGGGAGGT	.	192.0	55.0	156.0	0.0	.	354	.	.	.	none	.	.	PASS	Atlas-SNP
GNB2L1	10399	hgsc.bcm.edu	hg19	5	180670768	180670768	+	Silent	SNP	G	G	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	GNB2L1	NM_006098	exon1	c.C33G	p.L11L	GCCCTTGAGGGTG	.	88.0	24.0	88.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	hg19	6	16328017	16328017	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	ATXN1	NM_001128164	exon7	c.G525C	p.E175D	ATAGGCCTCCAGC	.	34.0	9.0	34.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
C6orf222	389384	hgsc.bcm.edu	hg19	6	36291122	36291122	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	C6orf222	NM_001010903	exon8	c.C1419G	p.S473R	CAGAAAGCTGGGC	.	61.0	15.0	51.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
NFYA	4800	hgsc.bcm.edu	hg19	6	41051876	41051876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	NFYA	NM_002505	exon4	c.G254A	p.G85E	CTGGTGGACAAGG	.	80.0	16.0	52.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
HCRTR2	3062	hgsc.bcm.edu	hg19	6	55145137	55145137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	HCRTR2,NS,carcinoma,0,1	HCRTR2	NM_001526	exon6	c.G1000A	p.A334T	ATGTTTGCCCATA	.	82.0	24.0	85.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
SMAP1	60682	hgsc.bcm.edu	hg19	6	71508431	71508431	+	Silent	SNP	A	A	G	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	SMAP1	NM_001044305	exon6	c.A567G	p.T189T	ACTTACAGCTGAA	.	1198.0	310.0	1050.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
SENP6	26054	hgsc.bcm.edu	hg19	6	76388567	76388567	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	SENP6	NM_015571	exon16	c.T1999G	p.S667A	GGCATCTCTGTTA	.	165.0	35.0	152.0	0.0	.	189	.	.	.	none	.	.	PASS	Atlas-SNP
SASH1	23328	hgsc.bcm.edu	hg19	6	148840743	148840743	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	SASH1	NM_015278	exon10	c.C923G	p.S308C	TCTACTCTGGCGT	.	99.0	27.0	111.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
MEOX2	4223	hgsc.bcm.edu	hg19	7	15725797	15725797	+	Silent	SNP	A	A	G	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	MEOX2,rectum,carcinoma,0,2	MEOX2	NM_005924	exon1	c.T231C	p.H77H	GTGGTGATGGTGG	.	67.0	10.0	52.0	1.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
MEOX2	4223	hgsc.bcm.edu	hg19	7	15725800	15725800	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	MEOX2	NM_005924	exon1	c.C228T	p.H76H	GTGATGGTGGTGG	.	34.0	11.0	13.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
COA1	55744	hgsc.bcm.edu	hg19	7	43679188	43679188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	.	NM_018224	exon6	c.A434G	p.K145R	TACTCCTTTTTCA	.	114.0	5.0	74.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TFPI2	7980	hgsc.bcm.edu	hg19	7	93519981	93519981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	TFPI2,NS,carcinoma,0,1	TFPI2	NM_001271003	exon1	c.G10A	p.A4T	GGCGAGCGGGGTC	.	206.0	94.0	163.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
HBP1	26959	hgsc.bcm.edu	hg19	7	106829794	106829794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	HBP1	NM_001244262	exon7	c.G853A	p.E285K	TTTGGCGAGTCTG	.	129.0	60.0	88.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM176B	28959	hgsc.bcm.edu	hg19	7	150491072	150491072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	TMEM176B	NM_014020	exon3	c.T292C	p.C98R	AGGCACAGCCTGA	.	228.0	46.0	141.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
LPL	4023	hgsc.bcm.edu	hg19	8	19805804	19805804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	LPL	NM_000237	exon2	c.C202T	p.H68Y	ACCTGTCATTTCA	.	125.0	40.0	111.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
PEBP4	157310	hgsc.bcm.edu	hg19	8	22777789	22777789	+	Missense_Mutation	SNP	T	T	A	rs201637080	alternate_allele	TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	PEBP4	NM_144962	exon3	c.A166T	p.I56F	AGCCAATGTTCCC	.	76.0	26.0	68.0	0.0	.	23	.	.	.	alt	.	.	PASS	Atlas-SNP
ZNF250	58500	hgsc.bcm.edu	hg19	8	146106965	146106965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	ZNF250	NM_021061	exon6	c.T1618C	p.C540R	GCCCACACTCCCC	.	65.0	16.0	63.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
PFKP	5214	hgsc.bcm.edu	hg19	10	3109839	3109839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	PFKP	NM_002627	exon1	c.G52A	p.E18K	TTCCTGGAGCACC	.	91.0	22.0	76.0	0.0	.	182	.	.	.	none	.	.	PASS	Atlas-SNP
POLR3A	11128	hgsc.bcm.edu	hg19	10	79741958	79741958	+	Missense_Mutation	SNP	G	G	C	rs200705099	by1000genomes;alternate_allele	TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	POLR3A	NM_007055	exon28	c.C3713G	p.T1238R	CCGTGTGTGGCCA	.	86.0	23.0	90.0	0.0	.	104	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
CNNM1	26507	hgsc.bcm.edu	hg19	10	101090293	101090293	+	Silent	SNP	G	G	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	CNNM1	NM_020348	exon1	c.G1149C	p.A383A	CTGGGCGCTGCGC	.	100.0	28.0	91.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	hg19	10	123842717	123842717	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	TACC2	NM_206862	exon4	c.T702C	p.F234F	TGGCTTTCCCCCT	.	94.0	4.0	101.0	0.0	.	271	.	.	.	none	.	.	PASS	Atlas-SNP
OR5P3	120066	hgsc.bcm.edu	hg19	11	7846802	7846802	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	OR5P3	NM_153445	exon1	c.A718G	p.T240A	TGCAGGTGGAGAA	.	132.0	37.0	121.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM44	54765	hgsc.bcm.edu	hg19	11	35685224	35685224	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	TRIM44	NM_017583	exon1	c.T565A	p.Y189N	AGTACCTATTGCC	.	132.0	39.0	130.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
SUV420H1	51111	hgsc.bcm.edu	hg19	11	67926523	67926523	+	Silent	SNP	A	A	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	SUV420H1	NM_017635	exon11	c.T1290G	p.T430T	TATATGAGTTAGC	.	67.0	14.0	82.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
CNTN5	53942	hgsc.bcm.edu	hg19	11	99941227	99941227	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	CNTN5	NM_001243270	exon10	c.A1234T	p.K412X	GAATGTAAGGCTA	.	89.0	15.0	79.0	0.0	.	324	.	.	.	none	.	.	PASS	Atlas-SNP
OR8B8	26493	hgsc.bcm.edu	hg19	11	124310809	124310809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	OR8B8	NM_012378	exon1	c.C173A	p.P58H	TACATAGGGGTGT	.	75.0	28.0	82.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43769218	43769218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	ADAMTS20	NM_025003	exon36	c.A5410G	p.K1804E	TTATTTTGCTGAA	.	111.0	28.0	85.0	0.0	.	635	.	.	.	none	.	.	PASS	Atlas-SNP
DDN	23109	hgsc.bcm.edu	hg19	12	49392077	49392077	+	Silent	SNP	T	T	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	DDN	NM_015086	exon2	c.A582T	p.G194G	CCGACCTCCCCAG	.	29.0	7.0	37.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
ERBB3	2065	hgsc.bcm.edu	hg19	12	56481697	56481697	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	ERBB3	NM_001982	exon6	c.T732C	p.F244F	CTGCTTTGTATGT	.	91.0	45.0	64.0	0.0	.	350	.	.	.	none	.	.	PASS	Atlas-SNP
R3HDM2	22864	hgsc.bcm.edu	hg19	12	57662177	57662177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	R3HDM2	NM_014925	exon16	c.C1897T	p.P633S	TCACAGGGACCAG	.	72.0	17.0	52.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
ASCL4	121549	hgsc.bcm.edu	hg19	12	108169302	108169302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	ASCL4	NM_203436	exon1	c.C310A	p.L104M	CGGGAGCTGGCAG	.	38.0	17.0	41.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
PARP4	143	hgsc.bcm.edu	hg19	13	25009275	25009275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	PARP4	NM_006437	exon31	c.G4004A	p.S1335N	GCAGGACTGTGAG	.	118.0	36.0	95.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
TGDS	23483	hgsc.bcm.edu	hg19	13	95230409	95230409	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	TGDS	NM_014305	exon9	c.A675G	p.S225S	AAGCCCTGACCCA	.	134.0	35.0	142.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103398632	103398632	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	.	NM_001146197	exon4	c.T4415A	p.L1472X	GCTTCTAATAAAA	.	73.0	18.0	91.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SYT16	83851	hgsc.bcm.edu	hg19	14	62547937	62547937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	SYT16	NM_031914	exon4	c.A1379G	p.H460R	ACCTGCACCCAGA	.	91.0	24.0	82.0	0.0	.	144	.	.	.	none	.	.	PASS	Atlas-SNP
SAMD15	161394	hgsc.bcm.edu	hg19	14	77845295	77845295	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	SAMD15	NM_001010860	exon1	c.G1534T	p.E512X	GAAAAGGAAGTTG	.	198.0	57.0	168.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
TTC7B	145567	hgsc.bcm.edu	hg19	14	91161915	91161915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	TTC7B	NM_001010854	exon6	c.A706G	p.T236A	CTCTTGTCAAGTT	.	50.0	14.0	43.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
NPAP1	23742	hgsc.bcm.edu	hg19	15	24924481	24924481	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	C15orf2,NS,carcinoma,-1,1	.	NM_018958	exon1	c.C3467G	p.P1156R	AACTTCCGTAAGA	.	83.0	17.0	57.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SCAMP2	10066	hgsc.bcm.edu	hg19	15	75165566	75165566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	SCAMP2	NM_005697	exon1	c.G31A	p.D11N	CTGGGTCCGCGAA	.	68.0	14.0	40.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
SCAPER	49855	hgsc.bcm.edu	hg19	15	76646306	76646306	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	SCAPER	NM_020843	exon29	c.T4031A	p.L1344Q	GTGGCCAGTAAAA	.	110.0	25.0	118.0	0.0	.	160	.	.	.	none	.	.	PASS	Atlas-SNP
ERI2	112479	hgsc.bcm.edu	hg19	16	20809656	20809656	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	ERI2	NM_001142725	exon9	c.C1466G	p.A489G	TCTTTGGCTTCTT	.	75.0	14.0	62.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
PFN1	5216	hgsc.bcm.edu	hg19	17	4850000	4850000	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	PFN1	NM_005022	exon2	c.A248T	p.E83V	CTAAATTCCCCAT	.	62.0	22.0	43.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
SLFN13	146857	hgsc.bcm.edu	hg19	17	33768163	33768163	+	Silent	SNP	A	A	G	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	SLFN13	NM_144682	exon6	c.T2145C	p.L715L	AGGGGGAAGGCCA	.	72.0	4.0	43.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
ACLY	47	hgsc.bcm.edu	hg19	17	40062802	40062802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	ACLY	NM_001096	exon8	c.G845T	p.G282V	GCGCCACCCCCGG	.	47.0	13.0	48.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
BRCA1	672	hgsc.bcm.edu	hg19	17	41246841	41246841	+	Missense_Mutation	SNP	G	G	C	rs80356990		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	BRCA1	NM_007298	exon9	c.C707G	p.T236S	TGTTCAGTATTTG	.	53.0	15.0	54.0	0.0	.	304	.	.	.	weak	.	.	PASS	Atlas-SNP
CHAD	1101	hgsc.bcm.edu	hg19	17	48545993	48545993	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	CHAD	NM_001267	exon1	c.A182T	p.N61I	AAGTTGTTGCGCT	.	56.0	14.0	72.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
TMC8	147138	hgsc.bcm.edu	hg19	17	76130534	76130534	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	TMC8	NM_152468	exon8	c.G876A	p.T292T	CCAGACGGCCTGC	.	47.0	13.0	46.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
CLUL1	27098	hgsc.bcm.edu	hg19	18	619236	619236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	CLUL1	NM_199167	exon3	c.G130A	p.D44N	GAGATAGATGCAG	.	154.0	19.0	165.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
ICAM1	3383	hgsc.bcm.edu	hg19	19	10394341	10394341	+	Silent	SNP	G	G	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	ICAM1,NS,carcinoma,0,1	ICAM1	NM_000201	exon3	c.G516T	p.T172T	GACCACGGTGCTG	.	54.0	4.0	67.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
CEP250	11190	hgsc.bcm.edu	hg19	20	34067123	34067123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	CEP250	NM_007186	exon18	c.A2162G	p.E721G	GACAGGAAGAAGT	.	148.0	46.0	130.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
CHRNA4	1137	hgsc.bcm.edu	hg19	20	61982275	61982275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	CHRNA4	NM_000744	exon5	c.T488C	p.I163T	ACGTCGATGCTGC	.	75.0	13.0	58.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
LZTR1	8216	hgsc.bcm.edu	hg19	22	21343964	21343964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	LZTR1	NM_006767	exon7	c.G644T	p.W215L	CCTGCTGGGAGGA	.	16.0	6.0	23.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
MPP1	4354	hgsc.bcm.edu	hg19	X	154007573	154007573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	MPP1	NM_002436	exon12	c.C1280G	p.A427G	TAGTGAGCGTACT	.	183.0	51.0	187.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
ATP6	0	hgsc.bcm.edu	hg19	MT	9185	9185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	.	ENST00000361899	exon1	c.T659C	p.L220P	TAAGCCTCTACCT	.	50.0	26.0	46.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCB1	6598	hgsc.bcm.edu	hg19	22	24167567	24167568	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.,3	SMARCB1	NM_003073	exon7	c.950_951del	p.317_317del	.	.	40.0	22.0	77.0	0.0	.	586	.	0.55	0	none	.	.	PASS	Atlas-Indel,Pindel
ELOVL6	79071	hgsc.bcm.edu	hg19	4	110980893	110980894	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	ELOVL6	NM_001130721	exon4	c.239_240del	p.80_80del	.	.	169.0	36.0	176.0	0.0	.	27	.	0.213018	0	none	.	.	PASS	Atlas-Indel,Pindel
TMEM170B	100113407	hgsc.bcm.edu	hg19	6	11575790	11575797	+	Frame_Shift_Del	DEL	TTTGAGGT	TTTGAGGT	-	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	TTTGAGGT	TTTGAGGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	TMEM170B	NM_001100829	exon3	c.394_450del	p.132_133del	.	.	72.0	10.0	61.0	0.0	.	9	.	0.138889	0	none	.	.	PASS	Atlas-INDEL
ZMYND10	51364	hgsc.bcm.edu	hg19	3	50382588	50382598	+	Frame_Shift_Del	DEL	CTCGCCCTGGC	CTCGCCCTGGC	-	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	CTCGCCCTGGC	CTCGCCCTGGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	ZMYND10	NM_015896	exon2	c.159_169del	p.53_57del	.	.	45.0	11.0	73.0	0.0	.	37	.	0.244444	0	none	.	.	PASS	Atlas-INDEL
KIAA1432	57589	hgsc.bcm.edu	hg19	9	5763340	5763340	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	KIAA1432	NM_001135920	exon19	c.2312delC	p.P771fs	.	.	135.0	44.0	109.0	0.0	.	97	.	0.325926	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF226	7769	hgsc.bcm.edu	hg19	19	44677042	44677042	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	.	NM_001032372	exon5	c.171delA	p.S57fs	.	.	281.0	81.0	273.0	0.0	.	.	.	0.288256	0	none	.	.	PASS	Atlas-Indel,Pindel
AHNAK	79026	hgsc.bcm.edu	hg19	11	62294536	62294536	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	AHNAK	NM_001620	exon5	c.7354delA	p.N2452fs	.	.	116.0	33.0	113.0	0.0	.	532	.	0.284483	0	none	.	.	PASS	Atlas-Indel,Pindel
LPIN1	23175	hgsc.bcm.edu	hg19	2	11959665	11959665	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	LPIN1	NM_001261428	exon20	c.2604delC	p.I868fs	.	.	110.0	37.0	117.0	0.0	.	99	.	0.336364	0	none	.	.	PASS	Atlas-Indel,Pindel
GDAP2	54834	hgsc.bcm.edu	hg19	1	118420722	118420723	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	GDAP2	NM_017686	exon13	c.1355_1356insA	p.I452fs	.	.	160.0	49.0	144.0	0.0	.	37	.	0.30625	0	none	.	.	PASS	Atlas-Indel,Pindel
ITGB3	3690	hgsc.bcm.edu	hg19	17	45380155	45380156	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	ITGB3	NM_000212	exon13	c.2083_2084insA	p.Y695_Y696delinsX	.	.	97.0	29.0	59.0	0.0	.	157	.	0.298969	0	none	.	.	PASS	Atlas-Indel,Pindel
ZMYND10	51364	hgsc.bcm.edu	hg19	3	50382584	50382594	+	Frame_Shift_Del	DEL	TGGGCTCGCCC	TGGGCTCGCCC	-	novel		TCGA-5P-A9KC-01A-11D-A42J-10	TCGA-5P-A9KC-10A-01D-A42M-10	TGGGCTCGCCC	TGGGCTCGCCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6a01a138-dd7b-4d04-b7c1-53e09d984f27	1a9bde7a-dc3e-413a-91fe-bf1fd077ada1	.	ZMYND10	NM_015896	exon2	c.163_173del	p.55_58del	.	.	50.0	14.0	74.0	0.0	.	37	.	0.280	.	none	.	.	PASS	Pindel