Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm ZNF644 84146 hgsc.bcm.edu hg19 1 91406116 91406116 + Silent SNP G G A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . ZNF644 NM_201269 exon3 c.C795T p.F265F TTGAATGAACTCT . 144.0 57.0 102.0 0.0 . 120 . . . none . . PASS Atlas-SNP KCND3 3752 hgsc.bcm.edu hg19 1 112524716 112524716 + Silent SNP C C T rs35131566 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . KCND3 NM_004980 exon2 c.G633A p.P211P GCTGCCCGGGACC . 34.0 13.0 60.0 0.0 . 150 . . . alt C|0.999;A|0.001 . PASS Atlas-SNP YY1AP1 55249 hgsc.bcm.edu hg19 1 155638446 155638446 + Missense_Mutation SNP A A T novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . YY1AP1 NM_001198903 exon8 c.T1265A p.M422K CTGTTCATGTTGA . 149.0 46.0 197.0 0.0 . 104 . . . none . . PASS Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21251317 21251317 + Nonsense_Mutation SNP G G A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . APOB NM_000384 exon13 c.C1711T p.Q571X CTGCCTGTGAAGG . 144.0 55.0 179.0 0.0 . 761 . . . none . . PASS Atlas-SNP ITGA6 3655 hgsc.bcm.edu hg19 2 173352903 173352903 + Missense_Mutation SNP C C A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . ITGA6 NM_000210 exon19 c.C2452A p.Q818K GGCGAGCAAGCTA . 115.0 46.0 159.0 0.0 . 171 . . . none . . PASS Atlas-SNP NEK10 152110 hgsc.bcm.edu hg19 3 27297798 27297798 + Silent SNP G G A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . NEK10 NM_199347 exon24 c.C2079T p.I693I ATACAGGATTGTT . 27.0 9.0 39.0 0.0 . 271 . . . none . . PASS Atlas-SNP KLHL40 131377 hgsc.bcm.edu hg19 3 42727131 42727131 + Silent SNP G G A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . . NM_152393 exon1 c.G21A p.Q7Q GGAGCAGGCGGAG . 16.0 8.0 22.0 0.0 . . . . . none . . PASS Atlas-SNP HERC5 51191 hgsc.bcm.edu hg19 4 89410409 89410409 + Silent SNP C C G rs141289100 bycluster;byfrequency;alternate_allele TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . HERC5 NM_016323 exon16 c.C2055G p.V685V AACAGTCAGAAGG . 220.0 98.0 259.0 0.0 . 114 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126411930 126411930 + Silent SNP C C A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . FAT4 NM_024582 exon17 c.C13953A p.I4651I TTCAATCCAGAGG . 73.0 32.0 85.0 0.0 . 1752 . . . none . . PASS Atlas-SNP NSUN2 54888 hgsc.bcm.edu hg19 5 6620336 6620336 + Missense_Mutation SNP C C T novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . NSUN2 NM_017755 exon7 c.G698A p.S233N CAGGGGCTGCTCA . 144.0 9.0 151.0 0.0 . 82 . . . none . . PASS Atlas-SNP FCHO2 115548 hgsc.bcm.edu hg19 5 72378596 72378596 + Missense_Mutation SNP A A C novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . FCHO2 NM_138782 exon24 c.A2189C p.E730A ATGCAGAACAAAT . 14.0 9.0 25.0 0.0 . 96 . . . none . . PASS Atlas-SNP SLC12A2 6558 hgsc.bcm.edu hg19 5 127419881 127419881 + Missense_Mutation SNP A A C novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . SLC12A2 NM_001046 exon1 c.A235C p.S79R AGCCAGAGCCGTT . 7.0 5.0 8.0 0.0 . 119 . . . none . . PASS Atlas-SNP CAMK2A 815 hgsc.bcm.edu hg19 5 149644564 149644564 + Missense_Mutation SNP C C G novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . CAMK2A NM_171825 exon3 c.G172C p.E58Q CACGCTCCAGCTT . 68.0 20.0 98.0 0.0 . 42 . . . none . . PASS Atlas-SNP KIF13A 63971 hgsc.bcm.edu hg19 6 17796913 17796913 + Missense_Mutation SNP T T G novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . KIF13A NM_001105567 exon23 c.A2929C p.T977P GCAGTGTTCTTGT . 175.0 75.0 248.0 0.0 . 276 . . . none . . PASS Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56463337 56463337 + Silent SNP T T C novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . DST NM_015548 exon27 c.A3996G p.A1332A CTGTTCTGCTTTT . 34.0 13.0 28.0 0.0 . 1427 . . . none . . PASS Atlas-SNP TYW1 55253 hgsc.bcm.edu hg19 7 66514966 66514966 + Missense_Mutation SNP G G T novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . TYW1 NM_018264 exon8 c.G1015T p.G339C AAGTCTGGTTTGT . 92.0 18.0 70.0 0.0 . 71 . . . none . . PASS Atlas-SNP MET 4233 hgsc.bcm.edu hg19 7 116423433 116423433 + Missense_Mutation SNP T T A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . MET NM_001127500 exon19 c.T3762A p.S1254R CTATAGTGTACAC . 105.0 62.0 74.0 0.0 . 412 . . . none . . PASS Atlas-SNP SPAM1 6677 hgsc.bcm.edu hg19 7 123599995 123599995 + Missense_Mutation SNP T T A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . SPAM1 NM_153189 exon5 c.T1502A p.L501H TGTTTCTTATCAT . 97.0 54.0 50.0 0.0 . 195 . . . none . . PASS Atlas-SNP PKHD1L1 93035 hgsc.bcm.edu hg19 8 110420393 110420393 + Silent SNP G G C novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . PKHD1L1 NM_177531 exon18 c.G1929C p.G643G GGATGGGATCGCT . 58.0 12.0 60.0 0.0 . 522 . . . none . . PASS Atlas-SNP VPS28 51160 hgsc.bcm.edu hg19 8 145651588 145651588 + Missense_Mutation SNP G G T novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . VPS28 NM_016208 exon3 c.C41A p.P14H TTCCCAGGGGCTG . 13.0 8.0 27.0 0.0 . 23 . . . none . . PASS Atlas-SNP FOCAD 54914 hgsc.bcm.edu hg19 9 20990148 20990148 + Missense_Mutation SNP T T A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . . NM_017794 exon44 c.T5031A p.F1677L GATATTTGCAACC . 89.0 39.0 93.0 0.0 . . . . . none . . PASS Atlas-SNP SMC5 23137 hgsc.bcm.edu hg19 9 72913102 72913102 + Missense_Mutation SNP G G C novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . SMC5 NM_015110 exon9 c.G1274C p.R425P ATAAGCGAAGAGA . 89.0 31.0 81.0 0.0 . 96 . . . none . . PASS Atlas-SNP VPS13A 23230 hgsc.bcm.edu hg19 9 79981712 79981712 + Missense_Mutation SNP A A C novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . VPS13A NM_001018038 exon61 c.A8395C p.I2799L GGACTGATTCCAG . 42.0 20.0 39.0 0.0 . 735 . . . none . . PASS Atlas-SNP PDCL 5082 hgsc.bcm.edu hg19 9 125582792 125582792 + Nonsense_Mutation SNP G G A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . PDCL NM_005388 exon4 c.C478T p.Q160X AAACCTGCTTGAA . 162.0 56.0 232.0 0.0 . 24 . . . none . . PASS Atlas-SNP SLC2A8 29988 hgsc.bcm.edu hg19 9 130167105 130167105 + Missense_Mutation SNP A A G novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . SLC2A8 NM_014580 exon8 c.A985G p.M329V GTGGTCATGGTGT . 64.0 14.0 98.0 0.0 . 27 . . . none . . PASS Atlas-SNP ARID5B 84159 hgsc.bcm.edu hg19 10 63852307 63852307 + Silent SNP C C A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 ARID5B,colon,carcinoma,0,1 ARID5B NM_032199 exon10 c.C3085A p.R1029R AAGGCCCGGGCAG . 131.0 44.0 184.0 0.0 . 125 . . . none . . PASS Atlas-SNP DNAJB12 54788 hgsc.bcm.edu hg19 10 74095536 74095536 + Splice_Site SNP A A T novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . DNAJB12 NM_017626 exon9 c.1260+2T>A . GCTCATACTTGGA . 55.0 22.0 76.0 0.0 . 22 . . . none . . PASS Atlas-SNP PTPRJ 5795 hgsc.bcm.edu hg19 11 48181586 48181586 + Missense_Mutation SNP T T A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . PTPRJ NM_002843 exon22 c.T3543A p.D1181E CAGAGATTTCACA . 145.0 56.0 160.0 0.0 . 225 . . . none . . PASS Atlas-SNP CAPN1 823 hgsc.bcm.edu hg19 11 64974118 64974118 + Missense_Mutation SNP T T G novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . CAPN1 NM_001198869 exon13 c.T1538G p.F513C TGCGCTTCTTCTC . 53.0 12.0 57.0 0.0 . 44 . . . none . . PASS Atlas-SNP RNF26 79102 hgsc.bcm.edu hg19 11 119206410 119206410 + Missense_Mutation SNP G G A rs200033048 bycluster TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . RNF26 NM_032015 exon1 c.G578A p.S193N TTTCCAGCAGTGC . 69.0 28.0 72.0 0.0 . 23 . . . weak G|0.999;A|0.001 0.001 PASS Atlas-SNP H2AFJ 55766 hgsc.bcm.edu hg19 12 14927594 14927594 + Missense_Mutation SNP C C G novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . H2AFJ NM_177925 exon1 c.C190G p.L64V GAGATCCTGGAGC . 105.0 36.0 139.0 0.0 . 14 . . . none . . PASS Atlas-SNP CPM 1368 hgsc.bcm.edu hg19 12 69326479 69326479 + Missense_Mutation SNP T T A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . CPM NM_001005502 exon2 c.A139T p.S47C CAATACTGTGTAA . 104.0 53.0 108.0 0.0 . 30 . . . none . . PASS Atlas-SNP DUSP6 1848 hgsc.bcm.edu hg19 12 89744677 89744677 + Missense_Mutation SNP A A G novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . DUSP6 NM_001946 exon2 c.T526C p.S176P AGGAAGAGTCAGA . 63.0 28.0 72.0 0.0 . 30 . . . none . . PASS Atlas-SNP ABCD4 5826 hgsc.bcm.edu hg19 14 74756774 74756774 + Missense_Mutation SNP G G T novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . ABCD4 NM_005050 exon13 c.C1375A p.L459M GTGGCAGGAATAG . 105.0 36.0 147.0 0.0 . 54 . . . none . . PASS Atlas-SNP NEDD4 4734 hgsc.bcm.edu hg19 15 56208934 56208934 + Silent SNP G G A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . NEDD4 NM_198400 exon1 c.C96T p.H32H GCACATGTGAACA . 162.0 7.0 231.0 0.0 . 167 . . . none . . PASS Atlas-SNP PPIB 5479 hgsc.bcm.edu hg19 15 64454355 64454355 + Splice_Site SNP T T C novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . PPIB NM_000942 exon3 c.136-2A>G . TACACCTGAGGAA . 187.0 80.0 220.0 0.0 . 20 . . . none . . PASS Atlas-SNP GPR97 222487 hgsc.bcm.edu hg19 16 57719830 57719830 + Missense_Mutation SNP C C T novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . GPR97 NM_170776 exon11 c.C1532T p.S511F TCAACTCCTTGCA . 120.0 52.0 187.0 0.0 . 74 . . . none . . PASS Atlas-SNP KIFC3 3801 hgsc.bcm.edu hg19 16 57806198 57806198 + Silent SNP T T C novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . KIFC3 NM_001130100 exon4 c.A318G p.V106V GTGTTCTACCTGT . 79.0 31.0 99.0 0.0 . 55 . . . none . . PASS Atlas-SNP MYO1C 4641 hgsc.bcm.edu hg19 17 1370772 1370772 + Splice_Site SNP A A C novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . MYO1C NM_033375 exon31 c.2960+2T>G . CGCCTCACCTGCC . 82.0 36.0 81.0 0.0 . 57 . . . none . . PASS Atlas-SNP LUC7L3 51747 hgsc.bcm.edu hg19 17 48818486 48818486 + Missense_Mutation SNP T T C novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . LUC7L3 NM_006107 exon4 c.T230C p.M77T GTTTCATGAAAGT . 310.0 87.0 306.0 0.0 . 32 . . . none . . PASS Atlas-SNP CLTC 1213 hgsc.bcm.edu hg19 17 57724783 57724783 + Missense_Mutation SNP A A T novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . CLTC NM_004859 exon3 c.A275T p.N92I TTTTTAACATTGA . 91.0 28.0 87.0 0.0 . 124 . . . none . . PASS Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9064319 9064319 + Silent SNP A A G novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . MUC16 NM_024690 exon3 c.T23127C p.H7709H GGGGATATGTGCT . 92.0 4.0 115.0 0.0 . 4315 . . . none . . PASS Atlas-SNP TBCB 1155 hgsc.bcm.edu hg19 19 36606528 36606528 + Missense_Mutation SNP C C G novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . TBCB NM_001281 exon1 c.C66G p.F22L CACCTTCCGCTCC . 28.0 10.0 43.0 0.0 . 13 . . . none . . PASS Atlas-SNP CIC 23152 hgsc.bcm.edu hg19 19 42795453 42795453 + Missense_Mutation SNP G G A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . CIC NM_015125 exon10 c.G2533A p.A845T GCACCAGCCCCTG . 45.0 19.0 64.0 0.0 . 249 . . . none . . PASS Atlas-SNP TUBB1 81027 hgsc.bcm.edu hg19 20 57597910 57597910 + Missense_Mutation SNP T T C rs374942824 TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . TUBB1 NM_030773 exon2 c.T68C p.M23T GGGAGATGATTGG . 88.0 51.0 82.0 0.0 . 42 . . . weak . . PASS Atlas-SNP SLC37A1 54020 hgsc.bcm.edu hg19 21 43963563 43963563 + Missense_Mutation SNP G G A novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . SLC37A1 NM_018964 exon9 c.G581A p.G194E TTATGGGGGTCTG . 243.0 75.0 320.0 0.0 . 48 . . . none . . PASS Atlas-SNP CORO1A 11151 hgsc.bcm.edu hg19 16 30198546 30198547 + Splice_Site INS - - GA novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . CORO1A NM_007074 exon5 c.636+2->GA . . . 74.0 21.0 102.0 0.0 . 36 . 0.283784 0 none . . PASS Atlas-INDEL ZNF385B 151126 hgsc.bcm.edu hg19 2 180310448 180310448 + Frame_Shift_Del DEL T T - novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . ZNF385B NM_152520 exon8 c.925delC p.H309fs . . 91.0 30.0 81.0 0.0 . 68 . 0.32967 0 none . . PASS Atlas-INDEL NEDD4 4734 hgsc.bcm.edu hg19 15 56208931 56208934 + Frame_Shift_Del DEL CATG CATG - novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 CATG CATG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . NEDD4 NM_198400 exon1 c.97_100del p.33_34del . . 214.0 67.0 225.0 0.0 . 167 . 0.313084 0 none . . PASS Atlas-INDEL SON 6651 hgsc.bcm.edu hg19 21 34927198 34927198 + Frame_Shift_Del DEL A A - novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . SON NM_032195 exon3 c.5660delC p.S1887X . . 42.0 15.0 38.0 0.0 . 343 . 0.357143 0 none . . PASS Atlas-INDEL GPR174 84636 hgsc.bcm.edu hg19 X 78427128 78427128 + Frame_Shift_Del DEL G G - novel TCGA-A4-7734-01A-11D-2136-08 TCGA-A4-7734-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 397b1104-cfd3-4d68-9e37-7ce13f64d5ea 9436630f-ab20-427a-9f0d-a8c636844aa8 . GPR174 NM_032553 exon1 c.623delC p.T208fs . . 151.0 60.0 101.0 0.0 . 79 . 0.397351 0 none . . PASS Atlas-INDEL