Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
RERE	473	hgsc.bcm.edu	hg19	1	8422892	8422892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	RERE	NM_012102	exon17	c.C1753A	p.R585S	CACTGCGTAGTGT	.	92.0	29.0	120.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
MAST2	23139	hgsc.bcm.edu	hg19	1	46290209	46290209	+	Silent	SNP	T	T	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	MAST2	NM_015112	exon2	c.T282C	p.D94D	TCAGGATGATTGT	.	265.0	88.0	282.0	0.0	.	136	.	.	.	none	.	.	PASS	Atlas-SNP
WDR3	10885	hgsc.bcm.edu	hg19	1	118502024	118502024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	WDR3	NM_006784	exon27	c.A2786G	p.K929R	AGAAGAAGAGGAA	.	66.0	24.0	50.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	hg19	1	155491175	155491175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ASH1L	NM_018489	exon2	c.G136A	p.E46K	CCTCTTCCTCCTT	.	495.0	164.0	518.0	0.0	.	279	.	.	.	none	.	.	PASS	Atlas-SNP
SLC41A1	254428	hgsc.bcm.edu	hg19	1	205770146	205770146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SLC41A1	NM_173854	exon3	c.G415A	p.V139M	CAGGCACTAGGAT	.	133.0	39.0	151.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
PIGR	5284	hgsc.bcm.edu	hg19	1	207109097	207109097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	PIGR	NM_002644	exon5	c.G1112A	p.C371Y	TAGGGGCAGAGCA	.	43.0	17.0	41.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
IRF6	3664	hgsc.bcm.edu	hg19	1	209974723	209974723	+	Silent	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	IRF6	NM_006147	exon3	c.C36T	p.P12P	CAGCCAGGGCTTT	.	151.0	46.0	161.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
EXOC8	149371	hgsc.bcm.edu	hg19	1	231472205	231472205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	EXOC8	NM_175876	exon1	c.G1287T	p.E429D	AAATAGCTCACAG	.	86.0	18.0	95.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
IRF2BP2	359948	hgsc.bcm.edu	hg19	1	234744251	234744251	+	Silent	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	IRF2BP2	NM_182972	exon1	c.C990A	p.A330A	AGTCAGGGCCGGC	.	39.0	15.0	36.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
OTOF	9381	hgsc.bcm.edu	hg19	2	26700635	26700635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	OTOF	NM_194322	exon1	c.C127G	p.H43D	GAGTGTGGGTGAT	.	36.0	16.0	43.0	0.0	.	524	.	.	.	none	.	.	PASS	Atlas-SNP
C2orf73	129852	hgsc.bcm.edu	hg19	2	54587528	54587528	+	Silent	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	C2orf73	NM_001100396	exon5	c.G693T	p.L231L	GGAGCTGTTAGAG	.	31.0	8.0	19.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
ZAP70	7535	hgsc.bcm.edu	hg19	2	98341626	98341626	+	Missense_Mutation	SNP	C	C	A	rs56404668	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ZAP70	NM_001079	exon4	c.C474A	p.H158Q	GGCCCACGAGCGG	.	75.0	36.0	82.0	0.0	.	77	.	.	.	alt	C|0.998;T|0.002	.	PASS	Atlas-SNP
SUMF1	285362	hgsc.bcm.edu	hg19	3	4490972	4490972	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SUMF1	NM_001164675	exon3	c.T497G	p.V166G	GTCTTCACTTGCT	.	260.0	84.0	235.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
ANO10	55129	hgsc.bcm.edu	hg19	3	43618738	43618738	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ANO10	NM_018075	exon6	c.A608T	p.Y203F	CCAAAGTAGCCAC	.	51.0	18.0	42.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF3	50650	hgsc.bcm.edu	hg19	3	56787577	56787577	+	Silent	SNP	G	G	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ARHGEF3	NM_001128615	exon7	c.C489G	p.S163S	TCCTTGGGAAAGC	.	93.0	20.0	137.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
EAF2	55840	hgsc.bcm.edu	hg19	3	121591418	121591418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	EAF2	NM_018456	exon5	c.G519A	p.M173I	CCAGATGAGTAGT	.	288.0	154.0	184.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
COL6A6	131873	hgsc.bcm.edu	hg19	3	130287032	130287032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	COL6A6	NM_001102608	exon5	c.G1985A	p.G662D	AAATTGGTGTAGT	.	297.0	79.0	184.0	0.0	.	497	.	.	.	none	.	.	PASS	Atlas-SNP
CP	1356	hgsc.bcm.edu	hg19	3	148930432	148930432	+	Missense_Mutation	SNP	T	T	C	rs141532762		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CP	NM_000096	exon2	c.A200G	p.Y67C	TTCTTATATAGTC	.	66.0	29.0	56.0	0.0	.	112	.	.	.	weak	T|1.000;C|0.000	0.000	PASS	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3156098	3156098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	HTT	NM_002111	exon27	c.C3577A	p.Q1193K	GGAGAACAAGCAT	.	33.0	9.0	43.0	0.0	.	221	.	.	.	none	.	.	PASS	Atlas-SNP
TECRL	253017	hgsc.bcm.edu	hg19	4	65180367	65180367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	TECRL	NM_001010874	exon5	c.C550T	p.H184Y	CTTACTGTACCAC	.	33.0	10.0	51.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
SEPT11	55752	hgsc.bcm.edu	hg19	4	77941678	77941678	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SEPT11	NM_018243	exon7	c.T808G	p.F270V	TGCGATTTTGTGA	.	157.0	52.0	127.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
SKP2	6502	hgsc.bcm.edu	hg19	5	36163851	36163851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SKP2	NM_032637	exon3	c.C385A	p.R129S	TGGTATCGCCTAG	.	82.0	5.0	82.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
NIPBL	25836	hgsc.bcm.edu	hg19	5	36984988	36984988	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	NIPBL	NM_015384	exon10	c.A1706T	p.E569V	CTGAAGAAATCAA	.	179.0	72.0	143.0	0.0	.	513	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP26	23092	hgsc.bcm.edu	hg19	5	142416823	142416823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ARHGAP26	NM_015071	exon13	c.A1207G	p.R403G	GAAACCAGAGGTA	.	81.0	41.0	59.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
JAKMIP2	9832	hgsc.bcm.edu	hg19	5	147000262	147000262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	JAKMIP2	NM_001270941	exon18	c.C2109A	p.D703E	TCTGTAGTCTAGT	.	176.0	85.0	105.0	0.0	.	154	.	.	.	none	.	.	PASS	Atlas-SNP
CREBRF	153222	hgsc.bcm.edu	hg19	5	172518026	172518026	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	.	NM_153607	exon4	c.C844G	p.L282V	GAGCCTCTTCAAG	.	96.0	26.0	91.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SPDEF	25803	hgsc.bcm.edu	hg19	6	34512076	34512076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SPDEF	NM_001252294	exon2	c.C157A	p.Q53K	GGCCCTGCTCGGG	.	79.0	18.0	87.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
SNX9	51429	hgsc.bcm.edu	hg19	6	158288583	158288583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SNX9	NM_016224	exon2	c.G17A	p.R6Q	AGGCTCGGGTTAT	.	72.0	23.0	99.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116417463	116417463	+	Missense_Mutation	SNP	C	C	T	rs121913244		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	MET,colon,carcinoma,0,2	MET	NM_001127500	exon16	c.C3334T	p.H1112Y	GTATATCATGGGA	.	276.0	144.0	199.0	0.0	.	412	.	.	.	weak	.	.	PASS	Atlas-SNP
CTTNBP2	83992	hgsc.bcm.edu	hg19	7	117365303	117365303	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CTTNBP2	NM_033427	exon18	c.C4064G	p.S1355C	AGCTTAGACATCC	.	326.0	72.0	192.0	0.0	.	200	.	.	.	none	.	.	PASS	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	151917756	151917756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	MLL3	NM_170606	exon23	c.G3564T	p.Q1188H	GAGGCTCTGTAAC	.	163.0	71.0	118.0	0.0	.	1564	.	.	.	none	.	.	PASS	Atlas-SNP
CDH17	1015	hgsc.bcm.edu	hg19	8	95201459	95201459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CDH17	NM_004063	exon3	c.T106G	p.F36V	TAGAAAATGTCAT	.	97.0	76.0	102.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
BNC2	54796	hgsc.bcm.edu	hg19	9	16419221	16419221	+	Silent	SNP	A	A	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	BNC2	NM_017637	exon7	c.T3066C	p.S1022S	CATAAGAGATCCT	.	96.0	29.0	100.0	0.0	.	166	.	.	.	none	.	.	PASS	Atlas-SNP
GRIN3A	116443	hgsc.bcm.edu	hg19	9	104449145	104449145	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	GRIN3A	NM_133445	exon2	c.G1037C	p.G346A	ATGACCCCAAACT	.	68.0	33.0	54.0	0.0	.	186	.	.	.	none	.	.	PASS	Atlas-SNP
MASTL	84930	hgsc.bcm.edu	hg19	10	27459483	27459483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	MASTL	NM_032844	exon8	c.T1595C	p.L532P	AAAACCTTATGTG	.	132.0	46.0	122.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
UNC5B	219699	hgsc.bcm.edu	hg19	10	73055666	73055666	+	Silent	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	UNC5B	NM_170744	exon14	c.C2274T	p.L758L	CTCCCTCCATGAC	.	116.0	46.0	116.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
PIK3C2A	5286	hgsc.bcm.edu	hg19	11	17124313	17124313	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	PIK3C2A	NM_002645	exon23	c.T3747G	p.C1249W	TCGATCACAGATG	.	103.0	37.0	110.0	0.0	.	148	.	.	.	none	.	.	PASS	Atlas-SNP
ENDOD1	23052	hgsc.bcm.edu	hg19	11	94823276	94823276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ENDOD1	NM_015036	exon1	c.C185T	p.A62V	AGGGTGCTGAGCG	.	17.0	7.0	15.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
ATM	472	hgsc.bcm.edu	hg19	11	108155202	108155202	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	ATM_ENST00000278616,colon,carcinoma,0,2	ATM	NM_000051	exon26	c.3993+2T>C	.	AACAGGTATGGCT	.	96.0	34.0	107.0	0.0	.	1657	.	.	.	none	.	.	PASS	Atlas-SNP
VWF	7450	hgsc.bcm.edu	hg19	12	6138619	6138619	+	Silent	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	VWF	NM_000552	exon22	c.C2856T	p.H952H	CTCAAAGTGAGTC	.	126.0	76.0	108.0	0.0	.	338	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC23	10233	hgsc.bcm.edu	hg19	12	7014840	7014840	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	LRRC23	NM_001135217	exon2	c.G43C	p.D15H	GACCAGGATGATT	.	148.0	43.0	120.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
C12orf39	80763	hgsc.bcm.edu	hg19	12	21679409	21679409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	C12orf39	NM_030572	exon1	c.G3A	p.M1I	GAACATGAAGGTA	.	43.0	13.0	49.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49416134	49416134	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	MLL2	NM_003482	exon52	c.T16341G	p.N5447K	GCCTCGATTCTAG	.	26.0	14.0	21.0	0.0	.	1173	.	.	.	none	.	.	PASS	Atlas-SNP
ULK1	8408	hgsc.bcm.edu	hg19	12	132405713	132405713	+	Silent	SNP	C	C	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ULK1	NM_003565	exon27	c.C3030G	p.A1010A	CAAGGCCCTGCTG	.	96.0	53.0	89.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
SSTR1	6751	hgsc.bcm.edu	hg19	14	38678657	38678657	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	SSTR1,brain,glioma,0,1	SSTR1	NM_001049	exon3	c.C63G	p.C21W	CAGCTGCGGCGAA	.	13.0	2.0	28.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
ARID4A	5926	hgsc.bcm.edu	hg19	14	58827680	58827680	+	Missense_Mutation	SNP	G	G	C	rs145426502	alternate_allele	TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ARID4A	NM_002892	exon19	c.G2000C	p.G667A	AACGGGGACGACC	.	99.0	14.0	105.0	0.0	.	222	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
CDAN1	146059	hgsc.bcm.edu	hg19	15	43023981	43023981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CDAN1	NM_138477	exon11	c.G1576A	p.E526K	GGGCCTCGCCCAA	.	103.0	35.0	102.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
GNB5	10681	hgsc.bcm.edu	hg19	15	52446239	52446239	+	Silent	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	GNB5	NM_016194	exon4	c.G273A	p.G91G	AAACTGCCCCAGG	.	57.0	17.0	80.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	64021464	64021464	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	HERC1	NM_003922	exon16	c.G3125A	p.W1042X	CCATTCCAAGGAC	.	25.0	4.0	40.0	0.0	.	624	.	.	.	none	.	.	PASS	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	396884	396884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	AXIN1	NM_181050	exon2	c.A142C	p.K48Q	CACCTTTCCCGGA	.	70.0	39.0	59.0	0.0	.	290	.	.	.	none	.	.	PASS	Atlas-SNP
HAGH	3029	hgsc.bcm.edu	hg19	16	1869997	1869997	+	Silent	SNP	A	A	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	HAGH	NM_005326	exon4	c.T333C	p.N111N	TTTCTCATTCCCG	.	135.0	26.0	122.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	hg19	16	3807907	3807907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CREBBP	NM_004380	exon18	c.C3512T	p.T1171I	CGGGATGTCTTGC	.	147.0	39.0	111.0	0.0	.	546	.	.	.	none	.	.	PASS	Atlas-SNP
GLYR1	84656	hgsc.bcm.edu	hg19	16	4895118	4895118	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	GLYR1	NM_032569	exon3	c.G112C	p.G38R	TCTTTCCGCGAGG	.	241.0	118.0	235.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
PALB2	79728	hgsc.bcm.edu	hg19	16	23646368	23646368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	PALB2	NM_024675	exon4	c.C1499T	p.S500F	TTCCTAGACAAGT	.	242.0	64.0	194.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
CENPT	80152	hgsc.bcm.edu	hg19	16	67863889	67863889	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CENPT	NM_025082	exon12	c.A965T	p.E322V	TCTACTTCATCTT	.	314.0	79.0	290.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
KDM6B	23135	hgsc.bcm.edu	hg19	17	7755333	7755333	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	KDM6B	NM_001080424	exon18	c.G4230C	p.W1410C	CGAGTGGTTCGCG	.	71.0	14.0	86.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
KRT33A	3883	hgsc.bcm.edu	hg19	17	39505660	39505660	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	KRT33A	NM_004138	exon2	c.G369C	p.E123D	GGCATTCTCAGAC	.	74.0	32.0	70.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
SCRN2	90507	hgsc.bcm.edu	hg19	17	45916322	45916322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SCRN2	NM_138355	exon5	c.G607T	p.A203S	GTTGGGCCGAGAT	.	177.0	57.0	219.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
NARF	26502	hgsc.bcm.edu	hg19	17	80443450	80443450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	NARF	NM_012336	exon10	c.G1049A	p.R350Q	GCTTTCGAAACAT	.	142.0	18.0	156.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
EPB41L3	23136	hgsc.bcm.edu	hg19	18	5394764	5394764	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	EPB41L3	NM_012307	exon22	c.A3182C	p.K1061T	TGCTCTTTGGCCT	.	125.0	46.0	133.0	0.0	.	222	.	.	.	none	.	.	PASS	Atlas-SNP
STK11	6794	hgsc.bcm.edu	hg19	19	1223168	1223168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	STK11	NM_000455	exon8	c.C1105T	p.P369S	ACGGTGCCCGGTG	.	23.0	10.0	26.0	0.0	.	410	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF433	163059	hgsc.bcm.edu	hg19	19	12126384	12126384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ZNF433	NM_001080411	exon4	c.C1298A	p.S433Y	GAGGCAGATCTGA	.	118.0	34.0	128.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1683	80726	hgsc.bcm.edu	hg19	19	18368726	18368726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	KIAA1683	NM_001145304	exon4	c.G3368C	p.G1123A	CGGACGCCCGCCT	.	127.0	41.0	121.0	0.0	.	190	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF681	148213	hgsc.bcm.edu	hg19	19	23927146	23927146	+	Silent	SNP	A	A	G	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	ZNF681,bladder,carcinoma,0,8	ZNF681	NM_138286	exon4	c.T1206C	p.A402A	GTTAAAAGCTTTG	.	74.0	3.0	72.0	2.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
U2AF2	11338	hgsc.bcm.edu	hg19	19	56180114	56180114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	U2AF2	NM_001012478	exon9	c.G901A	p.G301S	TCCAAGGGCTACG	.	91.0	30.0	148.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D20	128637	hgsc.bcm.edu	hg19	20	419913	419913	+	Silent	SNP	G	G	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	TBC1D20	NM_144628	exon7	c.C795A	p.V265V	GTCCAGGACTTCC	.	81.0	48.0	82.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
NCOA6	23054	hgsc.bcm.edu	hg19	20	33345756	33345756	+	Silent	SNP	T	T	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	NCOA6,bladder,carcinoma,0,2	NCOA6	NM_014071	exon7	c.A795G	p.Q265Q	TTGTTGTTGCTGC	.	95.0	5.0	59.0	0.0	.	219	.	.	.	none	.	.	PASS	Atlas-SNP
FAM65C	140876	hgsc.bcm.edu	hg19	20	49219116	49219116	+	Silent	SNP	G	G	A	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	FAM65C	NM_080829	exon13	c.C1140T	p.L380L	GTAGCTGAGGATG	.	115.0	24.0	90.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
CYP24A1	1591	hgsc.bcm.edu	hg19	20	52773943	52773943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CYP24A1	NM_000782	exon10	c.A1418G	p.H473R	GCCAAATGCAGTT	.	85.0	42.0	74.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
APP	351	hgsc.bcm.edu	hg19	21	27348294	27348294	+	Silent	SNP	A	A	C	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	APP	NM_000484	exon10	c.T1272G	p.P424P	AGCTTTAGGCAAG	.	96.0	28.0	94.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
WNK3	65267	hgsc.bcm.edu	hg19	X	54259340	54259340	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	WNK3	NM_020922	exon21	c.T4742A	p.L1581X	GGTGGCAAAGGAA	.	99.0	4.0	91.0	0.0	.	218	.	.	.	none	.	.	PASS	Atlas-SNP
TMF1	7110	hgsc.bcm.edu	hg19	3	69096768	69096770	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	TMF1	NM_007114	exon2	c.1087_1089del	p.363_363del	.	.	98.0	27.0	88.0	0.0	.	77	.	0.27551	0	none	.	.	PASS	Atlas-INDEL
GPR113	165082	hgsc.bcm.edu	hg19	2	26533773	26533773	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	GPR113	NM_001145168	exon11	c.2824delC	p.L942fs	.	.	39.0	18.0	36.0	0.0	.	134	.	0.461538	0	none	.	.	PASS	Atlas-INDEL