Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm H6PD 9563 hgsc.bcm.edu hg19 1 9305536 9305536 + Silent SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . H6PD NM_004285 exon2 c.C543T p.F181F CCACTTCTCAGCC . 101.0 39.0 108.0 0.0 . 71 . . . none . . PASS Atlas-SNP RABGGTB 5876 hgsc.bcm.edu hg19 1 76253203 76253203 + Missense_Mutation SNP A A G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . RABGGTB NM_004582 exon2 c.A25G p.I9V GATGTTATTATCA . 162.0 72.0 127.0 0.0 . 37 . . . none . . PASS Atlas-SNP OVGP1 5016 hgsc.bcm.edu hg19 1 111957940 111957940 + Missense_Mutation SNP A A C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . OVGP1 NM_002557 exon11 c.T1183G p.F395V GCCAAAATTGTGG . 98.0 38.0 91.0 0.0 . 177 . . . none . . PASS Atlas-SNP CCT3 7203 hgsc.bcm.edu hg19 1 156294858 156294858 + Silent SNP A A G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CCT3 NM_005998 exon6 c.T327C p.A109A GTGCTCAGCTACA . 36.0 17.0 30.0 0.0 . 61 . . . none . . PASS Atlas-SNP HHIPL2 79802 hgsc.bcm.edu hg19 1 222705394 222705394 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . HHIPL2 NM_024746 exon6 c.G1637A p.C546Y CCCAGGCAAAGAT . 65.0 31.0 56.0 0.0 . 122 . . . none . . PASS Atlas-SNP C1orf95 375057 hgsc.bcm.edu hg19 1 226784625 226784625 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . C1orf95 NM_001003665 exon2 c.G325A p.V109I GCCATCGTCATGG . 91.0 38.0 84.0 0.0 . 16 . . . none . . PASS Atlas-SNP CTNNA2 1496 hgsc.bcm.edu hg19 2 80136916 80136916 + Missense_Mutation SNP T T C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CTNNA2 NM_001164883 exon7 c.T1049C p.M350T AGTACATGAATAA . 169.0 70.0 156.0 0.0 . 462 . . . none . . PASS Atlas-SNP ZNF804A 91752 hgsc.bcm.edu hg19 2 185802210 185802210 + Missense_Mutation SNP A A C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ZNF804A NM_194250 exon4 c.A2087C p.N696T AAAAGAACACAAT . 570.0 24.0 135.0 0.0 . 322 . . . none . . PASS Atlas-SNP ZNF804A 91752 hgsc.bcm.edu hg19 2 185802211 185802211 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 ZNF804A,NS,carcinoma,0,1 ZNF804A NM_194250 exon4 c.C2088A p.N696K AAAGAACACAATA . 570.0 32.0 137.0 0.0 . 322 . . . none . . PASS Atlas-SNP ZNF804A 91752 hgsc.bcm.edu hg19 2 185802216 185802216 + Missense_Mutation SNP T T C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ZNF804A NM_194250 exon4 c.T2093C p.I698T ACACAATACTTTT . 569.0 30.0 137.0 0.0 . 322 . . . none . . PASS Atlas-SNP CUL3 8452 hgsc.bcm.edu hg19 2 225362540 225362540 + Missense_Mutation SNP C C G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 CUL3,NS,adenocarcinoma,0,1 CUL3 NM_001257198 exon12 c.G1655C p.R552P AGCTGTCGACCAC . 52.0 48.0 122.0 0.0 . 96 . . . none . . PASS Atlas-SNP CISH 1154 hgsc.bcm.edu hg19 3 50645901 50645901 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CISH NM_013324 exon3 c.G195T p.E65D GGTACCCTCTGCC . 49.0 28.0 64.0 0.0 . 27 . . . none . . PASS Atlas-SNP DNAH1 25981 hgsc.bcm.edu hg19 3 52380547 52380547 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . DNAH1 NM_015512 exon11 c.C1716A p.S572R CAGCAGCCTGCGC . 42.0 11.0 36.0 0.0 . 534 . . . none . . PASS Atlas-SNP A4GNT 51146 hgsc.bcm.edu hg19 3 137849689 137849689 + Splice_Site SNP A A C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . A4GNT NM_016161 exon3 c.408+2T>G . ACACTTACTTGAT . 195.0 96.0 136.0 0.0 . 42 . . . none . . PASS Atlas-SNP WDFY3 23001 hgsc.bcm.edu hg19 4 85722839 85722839 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . WDFY3 NM_014991 exon17 c.G2786T p.R929L GCTAATCGTTCAA . 36.0 16.0 24.0 0.0 . 314 . . . none . . PASS Atlas-SNP ADAMTS12 81792 hgsc.bcm.edu hg19 5 33534943 33534943 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ADAMTS12 NM_030955 exon23 c.G4601T p.S1534I CCGGCACTTTTCT . 91.0 44.0 65.0 0.0 . 464 . . . none . . PASS Atlas-SNP PCDHB14 56122 hgsc.bcm.edu hg19 5 140605127 140605127 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . PCDHB14 NM_018934 exon1 c.G2050A p.D684N CAGGCCGACTCCC . 73.0 5.0 85.0 0.0 . 132 . . . none . . PASS Atlas-SNP E2F3 1871 hgsc.bcm.edu hg19 6 20490451 20490451 + Missense_Mutation SNP C C G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . E2F3 NM_001949 exon7 c.C1188G p.N396K GGGAAACCTTTCT . 101.0 52.0 83.0 0.0 . 30 . . . none . . PASS Atlas-SNP HLA-A 3105 hgsc.bcm.edu hg19 6 29910554 29910554 + Missense_Mutation SNP T T G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . HLA-A NM_001242758 exon2 c.T94G p.F32V AGGTATTTCTTCA . 134.0 38.0 109.0 0.0 . 89 . . . none . . PASS Atlas-SNP BRD2 6046 hgsc.bcm.edu hg19 6 32944714 32944714 + Splice_Site SNP G G A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 BRD2_ENST00000395289,mouth,carcinoma,0,1 BRD2 NM_005104 exon7 c.1200+1G>A . GTCAAGGTACCCA . 42.0 21.0 29.0 0.0 . 70 . . . none . . PASS Atlas-SNP ASCC3 10973 hgsc.bcm.edu hg19 6 101075824 101075824 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ASCC3 NM_006828 exon28 c.G4415T p.R1472L TTTGTTCGAGATA . 69.0 30.0 74.0 0.0 . 205 . . . none . . PASS Atlas-SNP NRCAM 4897 hgsc.bcm.edu hg19 7 107807453 107807453 + Missense_Mutation SNP T T C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . NRCAM NM_001037132 exon27 c.A3379G p.M1127V CTGGCATTAGACC . 133.0 50.0 123.0 0.0 . 267 . . . none . . PASS Atlas-SNP OR6V1 346517 hgsc.bcm.edu hg19 7 142750247 142750247 + Missense_Mutation SNP G G C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . OR6V1 NM_001001667 exon1 c.G810C p.K270N CAGGAAGGTCGTG . 80.0 41.0 72.0 0.0 . 77 . . . none . . PASS Atlas-SNP SNAI2 6591 hgsc.bcm.edu hg19 8 49833817 49833817 + Missense_Mutation SNP C C G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 SNAI2,NS,carcinoma,0,1 SNAI2 NM_003068 exon1 c.G8C p.R3P AAGGAGCGCGGCA . 38.0 22.0 36.0 0.0 . 53 . . . none . . PASS Atlas-SNP RFX3 5991 hgsc.bcm.edu hg19 9 3301560 3301560 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . RFX3 NM_134428 exon6 c.C535T p.L179F TGAGAAGAGAGCT . 87.0 44.0 75.0 0.0 . 156 . . . none . . PASS Atlas-SNP ZSWIM8 23053 hgsc.bcm.edu hg19 10 75561460 75561460 + Silent SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . . NM_001242488 exon26 c.C5605T p.L1869L CTAGGGCTGGGGG . 14.0 7.0 5.0 0.0 . . . . . none . . PASS Atlas-SNP MUC5B 727897 hgsc.bcm.edu hg19 11 1276776 1276776 + Missense_Mutation SNP G G T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . MUC5B NM_002458 exon37 c.G16054T p.G5352C GCAACCGGTGGCC . 62.0 4.0 53.0 0.0 . 473 . . . none . . PASS Atlas-SNP SF3B2 10992 hgsc.bcm.edu hg19 11 65826742 65826742 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . SF3B2 NM_006842 exon11 c.C1253T p.A418V CTGCAGCCCCCAA . 141.0 6.0 132.0 0.0 . 85 . . . none . . PASS Atlas-SNP TMTC2 160335 hgsc.bcm.edu hg19 12 83251132 83251132 + Missense_Mutation SNP G G T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 TMTC2,NS,carcinoma,0,1 TMTC2 NM_152588 exon2 c.G427T p.G143W GATGTCGGGGCCA . 84.0 37.0 82.0 0.0 . 100 . . . none . . PASS Atlas-SNP FOXA1 3169 hgsc.bcm.edu hg19 14 38060788 38060788 + Missense_Mutation SNP A A T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . FOXA1 NM_004496 exon2 c.T1201A p.S401T TGATGGAGAACGG . 116.0 63.0 98.0 0.0 . 56 . . . none . . PASS Atlas-SNP MOK 5891 hgsc.bcm.edu hg19 14 102718326 102718326 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . . NM_014226 exon5 c.G290T p.R97I GGGTATCTTCTCC . 130.0 60.0 124.0 0.0 . . . . . none . . PASS Atlas-SNP C15orf56 644809 hgsc.bcm.edu hg19 15 40544920 40544920 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . C15orf56 NM_001039905 exon1 c.G170A p.R57Q GAGGTTCGCGGCG . 137.0 59.0 121.0 0.0 . 3 . . . none . . PASS Atlas-SNP EME2 197342 hgsc.bcm.edu hg19 16 1826070 1826070 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . EME2 NM_001257370 exon8 c.C971T p.A324V CCTAGGCGCTGGA . 62.0 22.0 39.0 0.0 . 40 . . . none . . PASS Atlas-SNP ABCA3 21 hgsc.bcm.edu hg19 16 2369834 2369834 + Missense_Mutation SNP G G C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ABCA3 NM_001089 exon8 c.C621G p.I207M TTCCCGGATGTAC . 33.0 10.0 34.0 0.0 . 176 . . . none . . PASS Atlas-SNP PRM3 58531 hgsc.bcm.edu hg19 16 11367405 11367405 + Missense_Mutation SNP G G C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . PRM3 NM_021247 exon1 c.C48G p.H16Q TGGGCTGTGGCCT . 21.0 7.0 15.0 0.0 . 8 . . . none . . PASS Atlas-SNP DCTPP1 79077 hgsc.bcm.edu hg19 16 30435583 30435583 + Missense_Mutation SNP A A T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . DCTPP1 NM_024096 exon3 c.T484A p.C162S AGTCACAGGGAAT . 80.0 43.0 54.0 0.0 . 12 . . . none . . PASS Atlas-SNP DHX38 9785 hgsc.bcm.edu hg19 16 72142801 72142801 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . DHX38 NM_014003 exon24 c.C3358T p.H1120Y GTGTATCACGAGT . 62.0 23.0 80.0 0.0 . 91 . . . none . . PASS Atlas-SNP NCOR1 9611 hgsc.bcm.edu hg19 17 15971431 15971431 + Silent SNP T T G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . NCOR1 NM_001190440 exon31 c.A4566C p.T1522T AGAAATTGTAACT . 117.0 32.0 90.0 0.0 . 240 . . . none . . PASS Atlas-SNP CCR7 1236 hgsc.bcm.edu hg19 17 38711306 38711306 + Missense_Mutation SNP G G T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CCR7 NM_001838 exon3 c.C825A p.F275L CAGCTGGAAGACT . 129.0 41.0 72.0 0.0 . 31 . . . none . . PASS Atlas-SNP KIF2B 84643 hgsc.bcm.edu hg19 17 51901648 51901648 + Silent SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . KIF2B NM_032559 exon1 c.C1254T p.V418V ACCTGTCAACGCT . 221.0 68.0 137.0 0.0 . 254 . . . none . . PASS Atlas-SNP ANKRD12 23253 hgsc.bcm.edu hg19 18 9257703 9257703 + Missense_Mutation SNP C C G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ANKRD12 NM_015208 exon9 c.C4438G p.Q1480E TGTGCTCAGGATC . 104.0 40.0 118.0 0.0 . 167 . . . none . . PASS Atlas-SNP MBP 4155 hgsc.bcm.edu hg19 18 74700845 74700845 + Silent SNP C C T rs112511603 TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . MBP NM_001025101 exon6 c.G705A p.P235P CTGCGACGGGGGT . 65.0 28.0 80.0 0.0 . 45 . . . weak C|0.500;T|0.500 0.500 PASS Atlas-SNP XAB2 56949 hgsc.bcm.edu hg19 19 7691039 7691039 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 XAB2,NS,carcinoma,0,1 XAB2 NM_020196 exon5 c.G640T p.G214C ACTTGCCGGCCTT . 40.0 2.0 37.0 0.0 . 69 . . . none . . PASS Atlas-SNP ZNF43 7594 hgsc.bcm.edu hg19 19 21990696 21990696 + Missense_Mutation SNP A A T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ZNF43 NM_001256653 exon4 c.T2170A p.F724I GGTTAAAAGCTTT . 37.0 20.0 27.0 0.0 . 152 . . . none . . PASS Atlas-SNP FBXO46 23403 hgsc.bcm.edu hg19 19 46215847 46215847 + Missense_Mutation SNP T T C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . FBXO46 NM_001080469 exon2 c.A907G p.K303E TGATCTTGTCCTT . 101.0 47.0 75.0 0.0 . 34 . . . none . . PASS Atlas-SNP EDN3 1908 hgsc.bcm.edu hg19 20 57876603 57876603 + Missense_Mutation SNP G G T rs457651 alternate_allele TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . EDN3 NM_207034 exon2 c.G191T p.G64V GCGAGGGGACTGT . 94.0 43.0 77.0 0.0 . 83 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765207 66765207 + Silent SNP G G A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . AR NM_000044 exon1 c.G219A p.Q73Q GCAGCAGCAGCAG . 102.0 9.0 97.0 0.0 . 249 . . . none . . PASS Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765208 66765208 + Missense_Mutation SNP C C G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . AR NM_000044 exon1 c.C220G p.Q74E CAGCAGCAGCAGC . 104.0 8.0 97.0 0.0 . 249 . . . none . . PASS Atlas-SNP CYTB 0 hgsc.bcm.edu hg19 MT 14889 14889 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . . ENST00000361789 exon1 c.G143A p.G48E CCACAGGACTATT . 290.0 27.0 175.0 0.0 . . . . . none . . PASS Atlas-SNP MYH13 8735 hgsc.bcm.edu hg19 17 10215392 10215392 + Frame_Shift_Del DEL A A - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 MYH13_ENST00000252172,NS,carcinoma,0,2 MYH13 NM_003802 exon32 c.4368delC p.V1456fs . . 93.0 30.0 63.0 0.0 . 533 . 0.322581 0 none . . PASS Atlas-Indel,Pindel CD83 9308 hgsc.bcm.edu hg19 6 14133946 14133946 + Frame_Shift_Del DEL C C - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CD83 NM_004233 exon4 c.448delG p.A150fs . . 107.0 49.0 73.0 0.0 . 23 . 0.457944 0 none . . PASS Atlas-Indel,Pindel EXOSC2 23404 hgsc.bcm.edu hg19 9 133579154 133579154 + Frame_Shift_Del DEL A A - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . EXOSC2 NM_014285 exon9 c.874delG p.E292fs . . 92.0 46.0 67.0 0.0 . 15 . 0.5 0 none . . PASS Atlas-Indel,Pindel PRKCI 5584 hgsc.bcm.edu hg19 3 170020905 170020905 + Frame_Shift_Del DEL A A - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . PRKCI NM_002740 exon18 c.1780delG p.E594fs . . 86.0 36.0 71.0 0.0 . 82 . 0.418605 0 none . . PASS Atlas-Indel,Pindel CASC5 57082 hgsc.bcm.edu hg19 15 40914359 40914359 + Frame_Shift_Del DEL A A - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CASC5 NM_170589 exon11 c.1974delC p.N658fs . . 111.0 45.0 103.0 0.0 . 269 . 0.405405 0 none . . PASS Atlas-Indel,Pindel IL17RB 55540 hgsc.bcm.edu hg19 3 53886139 53886147 + In_Frame_Del DEL CCCTCTGGT CCCTCTGGT - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 CCCTCTGGT CCCTCTGGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . IL17RB NM_018725 exon4 c.339_347del p.113_116del . . 103.0 35.0 126.0 0.0 . 27 . 0.339806 0 none . . PASS Atlas-Indel,Pindel ULK4 54986 hgsc.bcm.edu hg19 3 41795965 41795965 + Frame_Shift_Del DEL T T - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ULK4 NM_017886 exon22 c.2210delT p.I737fs . . 123.0 42.0 106.0 0.0 . 150 . 0.341 . none . . PASS Pindel MTSS1 9788 hgsc.bcm.edu hg19 8 125570101 125570101 + Frame_Shift_Del DEL A A - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . MTSS1 NM_014751 exon11 c.1052delC p.S351fs . . 56.0 17.0 67.0 0.0 . 79 . 0.304 . none . . PASS Pindel KANK4 163782 hgsc.bcm.edu hg19 1 62740357 62740358 + Frame_Shift_Del DEL AA AA - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 AA AA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . KANK4 NM_181712 exon3 c.419_420del p.140_140del . . 62.0 15.0 51.0 0.0 . 135 . 0.242 . none . . PASS Pindel ADCY9 115 hgsc.bcm.edu hg19 16 4042307 4042307 + Frame_Shift_Del DEL C C - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ADCY9 NM_001116 exon5 c.2048delA p.E683fs . . 76.0 26.0 69.0 0.0 . 151 . 0.342 . none . . PASS Pindel