Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm WDR65 149465 hgsc.bcm.edu hg19 1 43685098 43685098 + Missense_Mutation SNP A A G novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . WDR65 NM_001195831 exon13 c.A2137G p.M713V TTAAAAATGGAGA . 85.0 38.0 103.0 0.0 . 76 . . . none . . PASS Atlas-SNP SPATA6 54558 hgsc.bcm.edu hg19 1 48918785 48918785 + Missense_Mutation SNP C C T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . SPATA6 NM_019073 exon2 c.G70A p.V24M TAAGCACGACTCC . 71.0 30.0 72.0 0.0 . 45 . . . none . . PASS Atlas-SNP GTF2B 2959 hgsc.bcm.edu hg19 1 89352944 89352944 + Missense_Mutation SNP C C G novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . GTF2B NM_001514 exon2 c.G124C p.G42R ACTCACCTACAAC . 82.0 39.0 85.0 0.0 . 32 . . . none . . PASS Atlas-SNP C1orf146 388649 hgsc.bcm.edu hg19 1 92707844 92707844 + Missense_Mutation SNP A A C novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . C1orf146 NM_001012425 exon3 c.A142C p.I48L GGATCAATTATAT . 20.0 10.0 13.0 0.0 . 21 . . . none . . PASS Atlas-SNP ZNF697 90874 hgsc.bcm.edu hg19 1 120165395 120165395 + Missense_Mutation SNP G G A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . ZNF697 NM_001080470 exon3 c.C1571T p.A524V CAGCCCGCACACT . 86.0 36.0 53.0 0.0 . 26 . . . none . . PASS Atlas-SNP DENND4B 9909 hgsc.bcm.edu hg19 1 153907297 153907297 + Silent SNP C C T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b DENND4B_ENST00000361217,NS,carcinoma,0,6 DENND4B NM_014856 exon18 c.G2712A p.Q904Q CTGCTGCTGCTGC . 68.0 12.0 78.0 0.0 . 210 . . . none . . PASS Atlas-SNP CREG1 8804 hgsc.bcm.edu hg19 1 167515417 167515417 + Missense_Mutation SNP T T A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . CREG1 NM_003851 exon3 c.A580T p.I194L TGGTTATATTCAA . 105.0 46.0 128.0 0.0 . 6 . . . none . . PASS Atlas-SNP MARC1 64757 hgsc.bcm.edu hg19 1 220960439 220960439 + Silent SNP G G T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . . NM_022746 exon1 c.G153T p.L51L GCGGCTGCTGCAG . 25.0 10.0 3.0 0.0 . . . . . none . . PASS Atlas-SNP CEBPZ 10153 hgsc.bcm.edu hg19 2 37455042 37455042 + Missense_Mutation SNP T T A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . CEBPZ NM_005760 exon2 c.A1294T p.N432Y TGATATTTGAGCG . 113.0 37.0 74.0 0.0 . 68 . . . none . . PASS Atlas-SNP CAMKMT 79823 hgsc.bcm.edu hg19 2 44589184 44589184 + Missense_Mutation SNP C C T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . CAMKMT NM_024766 exon1 c.C38T p.T13I GCGAGACCGCGCG . 62.0 31.0 2.0 0.0 . 20 . . . none . . PASS Atlas-SNP GCC2 9648 hgsc.bcm.edu hg19 2 109087879 109087879 + Missense_Mutation SNP T T A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . GCC2 NM_181453 exon6 c.T2094A p.S698R ACTCAGTTCAGAA . 172.0 39.0 95.0 0.0 . 129 . . . none . . PASS Atlas-SNP ORC4 5000 hgsc.bcm.edu hg19 2 148695764 148695764 + Missense_Mutation SNP T T A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . ORC4 NM_002552 exon13 c.A1073T p.Q358L TTCCTTTGAACAA . 156.0 8.0 141.0 0.0 . 40 . . . none . . PASS Atlas-SNP PKP4 8502 hgsc.bcm.edu hg19 2 159459582 159459582 + Missense_Mutation SNP C C A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . PKP4 NM_001005476 exon4 c.C246A p.S82R CTTTAGCTCAACT . 104.0 23.0 117.0 0.0 . 133 . . . none . . PASS Atlas-SNP GPR155 151556 hgsc.bcm.edu hg19 2 175331330 175331330 + Missense_Mutation SNP A A G novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . GPR155 NM_001033045 exon7 c.T1208C p.L403S TTACTCAAAAGAA . 150.0 47.0 106.0 0.0 . 76 . . . none . . PASS Atlas-SNP NBEAL1 65065 hgsc.bcm.edu hg19 2 203972839 203972839 + Nonsense_Mutation SNP G G A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . NBEAL1 NM_001114132 exon13 c.G1790A p.W597X GTGCTTGGTTTTG . 121.0 71.0 117.0 0.0 . 266 . . . none . . PASS Atlas-SNP C2orf62 375307 hgsc.bcm.edu hg19 2 219222408 219222408 + Silent SNP C C T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . C2orf62 NM_198559 exon3 c.C270T p.A90A GCATGCCTCTAGC . 73.0 37.0 60.0 0.0 . 28 . . . none . . PASS Atlas-SNP LAMB2 3913 hgsc.bcm.edu hg19 3 49161312 49161312 + Missense_Mutation SNP G G C novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . LAMB2 NM_002292 exon24 c.C3646G p.Q1216E ACTCCTGCGCCCG . 84.0 57.0 72.0 0.0 . 156 . . . none . . PASS Atlas-SNP ANAPC10 10393 hgsc.bcm.edu hg19 4 145916549 145916549 + Missense_Mutation SNP G G T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . ANAPC10 NM_001256709 exon7 c.C567A p.F189L CATCATGAAATCT . 51.0 27.0 48.0 0.0 . 12 . . . none . . PASS Atlas-SNP ADAMTS12 81792 hgsc.bcm.edu hg19 5 33658354 33658354 + Silent SNP A A G novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . ADAMTS12 NM_030955 exon7 c.T1125C p.S375S GTTACAACTGCGG . 169.0 10.0 196.0 0.0 . 464 . . . none . . PASS Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 90281309 90281309 + Missense_Mutation SNP C C T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . GPR98 NM_032119 exon85 c.C18122T p.S6041L GCATGTCACAGAT . 157.0 54.0 193.0 0.0 . 605 . . . none . . PASS Atlas-SNP TMEM232 642987 hgsc.bcm.edu hg19 5 109904274 109904274 + Missense_Mutation SNP T T G novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . TMEM232 NM_001039763 exon11 c.A1329C p.K443N TGAAATTTTCACC . 71.0 34.0 60.0 0.0 . 57 . . . none . . PASS Atlas-SNP TRPC7 57113 hgsc.bcm.edu hg19 5 135561911 135561911 + Silent SNP T T A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . TRPC7 NM_020389 exon9 c.A2073T p.R691R TTTTGCTCGGGCG . 96.0 47.0 108.0 0.0 . 126 . . . none . . PASS Atlas-SNP HSPA9 3313 hgsc.bcm.edu hg19 5 137903216 137903216 + Missense_Mutation SNP T T C novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . HSPA9 NM_004134 exon7 c.A644G p.N215S AGCACATTCAGTC . 69.0 7.0 90.0 0.0 . 49 . . . none . . PASS Atlas-SNP PCDHA2 56146 hgsc.bcm.edu hg19 5 140176265 140176265 + Silent SNP C C A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . PCDHA2 NM_031495 exon1 c.C1716A p.T572T TGGCACCGCTGCT . 177.0 13.0 7.0 0.0 . 404 . . . none . . PASS Atlas-SNP DIAPH1 1729 hgsc.bcm.edu hg19 5 140953451 140953451 + Missense_Mutation SNP G G T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . DIAPH1 NM_005219 exon16 c.C1966A p.P656T GCAAAGGAGGGGG . 54.0 25.0 49.0 0.0 . 64 . . . none . . PASS Atlas-SNP PCYOX1L 78991 hgsc.bcm.edu hg19 5 148747898 148747898 + Missense_Mutation SNP A A T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . PCYOX1L NM_024028 exon6 c.A1166T p.Q389L AGCCCCAGGAGGC . 107.0 42.0 125.0 0.0 . 32 . . . none . . PASS Atlas-SNP RARS 5917 hgsc.bcm.edu hg19 5 167937680 167937680 + Nonsense_Mutation SNP G G T rs148161788 alternate_allele TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b RARS,NS,carcinoma,0,2 RARS NM_002887 exon12 c.G1441T p.E481X GAAAAAGAAAGAG . 128.0 51.0 135.0 0.0 . 58 . . . alt . . PASS Atlas-SNP DDX41 51428 hgsc.bcm.edu hg19 5 176943307 176943307 + Missense_Mutation SNP G G C novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . DDX41 NM_016222 exon3 c.C280G p.L94V CTTTAAGGTGCTG . 84.0 36.0 102.0 0.0 . 49 . . . none . . PASS Atlas-SNP DCDC2 51473 hgsc.bcm.edu hg19 6 24357769 24357769 + Silent SNP A A T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . DCDC2 NM_001195610 exon2 c.T210A p.T70T GTGGCCAGTCCGC . 74.0 4.0 70.0 0.0 . 53 . . . none . . PASS Atlas-SNP LRFN2 57497 hgsc.bcm.edu hg19 6 40399589 40399589 + Missense_Mutation SNP G G T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . LRFN2 NM_020737 exon2 c.C1264A p.P422T GTTCCGGGGGGCT . 56.0 23.0 56.0 0.0 . 133 . . . none . . PASS Atlas-SNP BVES 11149 hgsc.bcm.edu hg19 6 105563684 105563684 + Missense_Mutation SNP G G A rs370149373 TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . BVES NM_001199563 exon7 c.C835T p.H279Y GCTGATGTTCCAG . 97.0 32.0 95.0 0.0 . 33 . . . weak . . PASS Atlas-SNP FBXL13 222235 hgsc.bcm.edu hg19 7 102553614 102553614 + Silent SNP G G A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . FBXL13 NM_001111038 exon11 c.C927T p.F309F GTCTGTGAACCGT . 169.0 38.0 170.0 0.0 . 65 . . . none . . PASS Atlas-SNP LAMB1 3912 hgsc.bcm.edu hg19 7 107605061 107605061 + Missense_Mutation SNP G G C novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . LAMB1 NM_002291 exon14 c.C1634G p.P545R TAACCAGGTTCCA . 202.0 73.0 153.0 0.0 . 185 . . . none . . PASS Atlas-SNP FAM108B1 51104 hgsc.bcm.edu hg19 9 74489541 74489541 + Silent SNP A A G novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . FAM108B1 NM_016014 exon2 c.T456C p.A152A CCTAAGAGCAAGC . 90.0 4.0 86.0 0.0 . 24 . . . none . . PASS Atlas-SNP FAM178A 55719 hgsc.bcm.edu hg19 10 102675796 102675796 + Nonsense_Mutation SNP C C T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . FAM178A NM_001136123 exon2 c.C181T p.Q61X TCAAAACAAGGTA . 55.0 20.0 66.0 0.0 . 9 . . . none . . PASS Atlas-SNP WDR11 55717 hgsc.bcm.edu hg19 10 122665493 122665493 + Missense_Mutation SNP T T A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . WDR11 NM_018117 exon27 c.T3397A p.S1133T CTCCTCTCTCTGG . 122.0 48.0 115.0 0.0 . 95 . . . none . . PASS Atlas-SNP TCIRG1 10312 hgsc.bcm.edu hg19 11 67817430 67817430 + Missense_Mutation SNP A A G novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . TCIRG1 NM_006019 exon17 c.A2015G p.E672G CCCAGGAGGAAAA . 72.0 38.0 62.0 0.0 . 40 . . . none . . PASS Atlas-SNP NAALAD2 10003 hgsc.bcm.edu hg19 11 89868775 89868775 + Missense_Mutation SNP A A G novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . NAALAD2 NM_005467 exon2 c.A131G p.H44R GCTATCATCAAAG . 58.0 10.0 30.0 0.0 . 113 . . . none . . PASS Atlas-SNP NT5DC3 51559 hgsc.bcm.edu hg19 12 104182695 104182695 + Missense_Mutation SNP G G C novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . NT5DC3 NM_001031701 exon10 c.C1022G p.P341R CGGAAAGGCCTAA . 106.0 46.0 117.0 0.0 . 113 . . . none . . PASS Atlas-SNP RGCC 28984 hgsc.bcm.edu hg19 13 42031876 42031876 + Silent SNP G G A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . . NM_014059 exon1 c.G33A p.A11A CCCCGCGGCCGCC . 25.0 14.0 0.0 0.0 . . . . . none . . PASS Atlas-SNP FAM194B 220081 hgsc.bcm.edu hg19 13 46170728 46170728 + Missense_Mutation SNP T T C rs45625342 bycluster TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b FAM194B,NS,carcinoma,0,1 FAM194B NM_182542 exon3 c.A413G p.E138G AGATACTCTTCCT . 66.0 5.0 36.0 0.0 . 42 . . . weak . . PASS Atlas-SNP NKX2-1 7080 hgsc.bcm.edu hg19 14 36988288 36988288 + Missense_Mutation SNP C C A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b NKX2-1,NS,malignant_melanoma,0,1 NKX2-1 NM_001079668 exon2 c.G365T p.G122V ATGTTGCCCAGGT . 26.0 13.0 5.0 1.0 . 21 . . . none . . PASS Atlas-SNP ARID4A 5926 hgsc.bcm.edu hg19 14 58796735 58796735 + Missense_Mutation SNP A A C novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . ARID4A NM_002892 exon11 c.A754C p.S252R AAAGCAAGCATCT . 151.0 66.0 171.0 0.0 . 222 . . . none . . PASS Atlas-SNP TTC8 123016 hgsc.bcm.edu hg19 14 89338717 89338717 + Missense_Mutation SNP C C T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . TTC8 NM_144596 exon13 c.C1268T p.A423V GGCTGGCTCTGGT . 122.0 58.0 138.0 0.0 . 42 . . . none . . PASS Atlas-SNP TRPM1 4308 hgsc.bcm.edu hg19 15 31342655 31342655 + Missense_Mutation SNP A A T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . TRPM1 NM_001252020 exon11 c.T1445A p.V482E TCCTCCACTTCCT . 100.0 38.0 117.0 0.0 . 183 . . . none . . PASS Atlas-SNP AQR 9716 hgsc.bcm.edu hg19 15 35189882 35189882 + Silent SNP T T G novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . AQR NM_014691 exon21 c.A2268C p.G756G CCCTTTTCCACTT . 79.0 30.0 63.0 0.0 . 139 . . . none . . PASS Atlas-SNP CDH11 1009 hgsc.bcm.edu hg19 16 64981793 64981793 + Missense_Mutation SNP A A G novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b CDH11,colon,carcinoma,0,1 CDH11 NM_001797 exon13 c.T2104C p.Y702H GCATGTACTGATA . 223.0 117.0 106.0 0.0 . 260 . . . none . . PASS Atlas-SNP WDR16 146845 hgsc.bcm.edu hg19 17 9501596 9501596 + Silent SNP C C A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . WDR16 NM_145054 exon5 c.C582A p.I194I AAAAATCTGGCCA . 54.0 14.0 31.0 0.0 . 67 . . . none . . PASS Atlas-SNP MFSD11 79157 hgsc.bcm.edu hg19 17 74738356 74738356 + Splice_Site SNP G G A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . MFSD11 NM_001242534 exon6 c.437+1G>A . GTCTAGGTAATTA . 180.0 10.0 120.0 0.0 . 47 . . . none . . PASS Atlas-SNP TXNDC2 84203 hgsc.bcm.edu hg19 18 9887074 9887074 + Missense_Mutation SNP G G A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . TXNDC2 NM_001098529 exon2 c.G598A p.E200K TCAGAAGAAGCCA . 114.0 7.0 117.0 0.0 . 168 . . . none . . PASS Atlas-SNP CABLES1 91768 hgsc.bcm.edu hg19 18 20768825 20768825 + Missense_Mutation SNP C C T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . CABLES1 NM_001100619 exon2 c.C869T p.S290F AGAGATCTTCCTT . 24.0 7.0 29.0 0.0 . 32 . . . none . . PASS Atlas-SNP FHOD3 80206 hgsc.bcm.edu hg19 18 34310626 34310626 + Silent SNP A A G novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . FHOD3 NM_025135 exon17 c.A2910G p.G970G AGATGGAAAAAGG . 85.0 4.0 79.0 0.0 . 210 . . . none . . PASS Atlas-SNP ABCA7 10347 hgsc.bcm.edu hg19 19 1041554 1041554 + Missense_Mutation SNP A A T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . ABCA7 NM_019112 exon3 c.A112T p.I38F TTCTTCATCCTGG . 25.0 9.0 26.0 0.0 . 174 . . . none . . PASS Atlas-SNP EVI5L 115704 hgsc.bcm.edu hg19 19 7927064 7927064 + Silent SNP C C T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . EVI5L NM_001159944 exon15 c.C1701T p.G567G CGTGGGCGAGCTG . 15.0 10.0 4.0 0.0 . 43 . . . none . . PASS Atlas-SNP TSHZ3 57616 hgsc.bcm.edu hg19 19 31768208 31768208 + Missense_Mutation SNP C C T rs201694059 alternate_allele TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . TSHZ3 NM_020856 exon2 c.G2491A p.V831I ATGATACGACGGC . 199.0 81.0 199.0 0.0 . 549 . . . alt C|0.999;A|0.001 . PASS Atlas-SNP ZNF181 339318 hgsc.bcm.edu hg19 19 35231657 35231657 + Missense_Mutation SNP T T C novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . ZNF181 NM_001029997 exon4 c.T371C p.I124T AATATATAGAGAA . 107.0 29.0 103.0 0.0 . 65 . . . none . . PASS Atlas-SNP CATSPERG 57828 hgsc.bcm.edu hg19 19 38850108 38850108 + Splice_Site SNP A A T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . CATSPERG NM_021185 exon14 c.1497-2A>T . CCCTGCAGCTCTA . 69.0 33.0 88.0 0.0 . 121 . . . none . . PASS Atlas-SNP SUPT5H 6829 hgsc.bcm.edu hg19 19 39966780 39966780 + Missense_Mutation SNP G G C novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . SUPT5H NM_003169 exon28 c.G3084C p.E1028D CAGTGAGCACCTG . 86.0 10.0 112.0 0.0 . 119 . . . none . . PASS Atlas-SNP CCDC9 26093 hgsc.bcm.edu hg19 19 47763935 47763935 + Missense_Mutation SNP G G A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . CCDC9 NM_015603 exon5 c.G301A p.G101S CAGGGAGGCCGGG . 7.0 6.0 0.0 0.0 . 37 . . . none . . PASS Atlas-SNP GLTSCR1 29998 hgsc.bcm.edu hg19 19 48205552 48205552 + Silent SNP C C T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . GLTSCR1 NM_015711 exon15 c.C4563T p.P1521P CGCGCCCTCGTAC . 13.0 7.0 0.0 0.0 . 79 . . . none . . PASS Atlas-SNP OLIG1 116448 hgsc.bcm.edu hg19 21 34442850 34442850 + Missense_Mutation SNP G G C novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . OLIG1 NM_138983 exon1 c.G298C p.E100Q GCCAAGGAGGAGC . 22.0 13.0 0.0 0.0 . 4 . . . none . . PASS Atlas-SNP KRTAP10-3 386682 hgsc.bcm.edu hg19 21 45978023 45978023 + Silent SNP G G A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . KRTAP10-3 NM_198696 exon1 c.C576T p.A192A GCAGGAGGCCGGG . 165.0 9.0 14.0 0.0 . 17 . . . none . . PASS Atlas-SNP EIF3L 51386 hgsc.bcm.edu hg19 22 38273745 38273745 + Missense_Mutation SNP G G A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . EIF3L NM_016091 exon11 c.G1142A p.R381H CCATGCGTATTGA . 198.0 77.0 260.0 1.0 . 35 . . . none . . PASS Atlas-SNP ENTHD1 150350 hgsc.bcm.edu hg19 22 40283710 40283710 + Missense_Mutation SNP A A C novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . ENTHD1 NM_152512 exon2 c.T43G p.S15A CATCTGAGTAATT . 22.0 8.0 39.0 0.0 . 83 . . . none . . PASS Atlas-SNP CENPM 79019 hgsc.bcm.edu hg19 22 42339699 42339699 + Missense_Mutation SNP C C T rs138744954 bycluster TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . CENPM NM_024053 exon5 c.G317A p.R106Q CTCTCCCGCCCAG . 94.0 37.0 138.0 0.0 . 8 . . . weak C|1.000;T|0.000 0.000 PASS Atlas-SNP MCAT 27349 hgsc.bcm.edu hg19 22 43539309 43539309 + Missense_Mutation SNP C C A rs200527554 bycluster TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . MCAT NM_014507 exon1 c.G46T p.A16S AGCTGGCGCCCAA . 6.0 6.0 0.0 0.0 . 26 . . . weak . . PASS Atlas-SNP HDAC6 10013 hgsc.bcm.edu hg19 X 48676773 48676773 + Missense_Mutation SNP A A G novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . HDAC6 NM_006044 exon22 c.A2141G p.D714G ATGCTGACTACCT . 88.0 77.0 95.0 0.0 . 111 . . . none . . PASS Atlas-SNP SERPINA7 6906 hgsc.bcm.edu hg19 X 105280775 105280775 + Missense_Mutation SNP A A G novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . SERPINA7 NM_000354 exon2 c.T275C p.I92T TCCACAATCTCAG . 46.0 6.0 45.0 0.0 . 72 . . . none . . PASS Atlas-SNP TENM1 10178 hgsc.bcm.edu hg19 X 123637524 123637524 + Missense_Mutation SNP G G T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . . NM_001163278 exon19 c.C3331A p.P1111T AGTCAGGGCACGT . 155.0 132.0 134.0 1.0 . . . . . none . . PASS Atlas-SNP ASAH1 427 hgsc.bcm.edu hg19 8 17916973 17916973 + Frame_Shift_Del DEL T T - novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . ASAH1 NM_004315 exon12 c.967delC p.L323fs . . 66.0 25.0 77.0 0.0 . 71 . 0.378788 0 none . . PASS Atlas-Indel,Pindel RENBP 5973 hgsc.bcm.edu hg19 X 153200984 153200985 + Frame_Shift_Ins INS - - T novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . RENBP NM_002910 exon10 c.1123_1124insA p.E375fs . . 171.0 144.0 139.0 0.0 . 69 . 0.842105 0 none . . PASS Atlas-Indel,Pindel SEC14L2 23541 hgsc.bcm.edu hg19 22 30818390 30818391 + Frame_Shift_Ins INS - - A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . SEC14L2 NM_012429 exon12 c.1206_1207insA p.P402fs . . 62.0 21.0 82.0 0.0 . 24 . 0.33871 0 none . . PASS Atlas-Indel,Pindel STMN4 81551 hgsc.bcm.edu hg19 8 27097616 27097616 + Frame_Shift_Del DEL G G - novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . STMN4 NM_030795 exon6 c.464delA p.Q155fs . . 129.0 10.0 164.0 0.0 . 28 . 0.0775194 0 none . . PASS Atlas-INDEL SERPINF1 5176 hgsc.bcm.edu hg19 17 1679947 1679953 + Frame_Shift_Del DEL GAGAACT GAGAACT - novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 GAGAACT GAGAACT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . SERPINF1 NM_002615 exon7 c.907_913del p.303_305del . . 133.0 60.0 137.0 0.0 . 31 . 0.451128 0 none . . PASS Atlas-Indel,Pindel NEB 4703 hgsc.bcm.edu hg19 2 152579988 152579989 + Frame_Shift_Ins INS - - A novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b NEB,NS,neuroblastoma,0,1 NEB NM_004543 exon9 c.625_626insT p.E209_D210delinsX . . 120.0 67.0 72.0 0.0 . 1697 . 0.558333 0 none . . PASS Atlas-Indel,Pindel OR5T2 219464 hgsc.bcm.edu hg19 11 56000572 56000573 + Frame_Shift_Del DEL AA AA - novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 AA AA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . OR5T2 NM_001004746 exon1 c.90_91del p.30_31del . . 106.0 39.0 110.0 0.0 . 107 . 0.367925 0 none . . PASS Atlas-Indel,Pindel CITED2 10370 hgsc.bcm.edu hg19 6 139694300 139694309 + Frame_Shift_Del DEL CACACGAAGT CACACGAAGT - novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 CACACGAAGT CACACGAAGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . CITED2 NM_001168389 exon2 c.789_798del p.263_266del . . 57.0 15.0 89.0 0.0 . 16 . 0.263158 0 none . . PASS Atlas-Indel,Pindel GMIP 51291 hgsc.bcm.edu hg19 19 19745515 19745515 + Splice_Site DEL G G - novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . GMIP NM_016573 exon19 c.1888-2C>- . . . 82.0 36.0 88.0 0.0 . 55 . 0.439024 0 none . . PASS Atlas-Indel,Pindel CDC42BPG 55561 hgsc.bcm.edu hg19 11 64603951 64603963 + Frame_Shift_Del DEL CCAGCTGGGGGCC CCAGCTGGGGGCC - novel TCGA-AT-A5NU-01A-11D-A28G-10 TCGA-AT-A5NU-10A-01D-A28G-10 CCAGCTGGGGGCC CCAGCTGGGGGCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 573e6af3-cd69-43ac-8dbf-b2f3331d520d f93a95f6-7503-431f-9f12-d22c659ce92b . CDC42BPG NM_017525 exon12 c.1425_1437del p.475_479del . . 62.0 10.0 99.0 0.0 . 101 . 0.161 . none . . PASS Pindel