Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
VPS13D	55187	hgsc.bcm.edu	hg19	1	12327038	12327038	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	VPS13D	NM_015378	exon14	c.T1695C	p.T565T	AGGAACTATGTTT	.	168.0	30.0	141.0	0.0	.	316	.	.	.	none	.	.	PASS	Atlas-SNP
POMGNT1	55624	hgsc.bcm.edu	hg19	1	46654508	46654508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	POMGNT1	NM_001243766	exon23	c.C2130A	p.N710K	CCATGGGTTGGGC	.	71.0	9.0	72.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
FAM73A	374986	hgsc.bcm.edu	hg19	1	78325733	78325733	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	FAM73A	NM_001270384	exon11	c.T1197C	p.L399L	AATTCTTTCAGAA	.	86.0	4.0	51.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC8D	55144	hgsc.bcm.edu	hg19	1	90399406	90399406	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	LRRC8D	NM_018103	exon3	c.A779T	p.K260I	GCTTTAAATTTTC	.	44.0	16.0	33.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
DNTTIP2	30836	hgsc.bcm.edu	hg19	1	94342829	94342829	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	DNTTIP2	NM_014597	exon2	c.T662G	p.I221S	GGTACAATCTTAC	.	295.0	109.0	264.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
SASS6	163786	hgsc.bcm.edu	hg19	1	100572514	100572514	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SASS6	NM_194292	exon12	c.T1362G	p.V454V	TTTTTTAACTGTA	.	38.0	11.0	37.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
HORMAD1	84072	hgsc.bcm.edu	hg19	1	150679129	150679129	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.,1	HORMAD1	NM_032132	exon10	c.A704T	p.N235I	TCAATATTTTCCA	.	226.0	86.0	209.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
CREG1	8804	hgsc.bcm.edu	hg19	1	167515357	167515357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CREG1	NM_003851	exon3	c.T640C	p.Y214H	TATAATATTCTTC	.	67.0	29.0	66.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	185984290	185984290	+	Splice_Site	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	HMCN1,NS,carcinoma,0,1	HMCN1	NM_031935	exon31	c.4631-1G>A	.	TTTGTAGTTCCAC	.	93.0	37.0	129.0	1.0	.	797	.	.	.	none	.	.	PASS	Atlas-SNP
ASAP2	8853	hgsc.bcm.edu	hg19	2	9533671	9533671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ASAP2	NM_003887	exon24	c.T2579C	p.L860S	AAGCCTTGAGCCA	.	19.0	6.0	27.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
NRBP1	29959	hgsc.bcm.edu	hg19	2	27664588	27664588	+	Missense_Mutation	SNP	G	G	A	rs141700147	bycluster	TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	NRBP1,colon,carcinoma,0,1	NRBP1	NM_013392	exon18	c.G1517A	p.R506Q	AGAGCCGGTTGAC	.	334.0	127.0	314.0	1.0	.	40	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
SLC8A1	6546	hgsc.bcm.edu	hg19	2	40656328	40656328	+	Missense_Mutation	SNP	G	G	T	rs370199920	alternate_allele	TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	SLC8A1,colon,carcinoma,+1,1	SLC8A1	NM_001252624	exon1	c.C1093A	p.R365S	GAATGCGATAAAA	.	267.0	14.0	236.0	0.0	.	221	.	.	.	alt	.	.	PASS	Atlas-SNP
MSH6	2956	hgsc.bcm.edu	hg19	2	48027125	48027125	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MSH6	NM_000179	exon4	c.C2003G	p.S668C	CTGATTCCATTGG	.	282.0	107.0	274.0	0.0	.	341	.	.	.	none	.	.	PASS	Atlas-SNP
TCF7L1	83439	hgsc.bcm.edu	hg19	2	85536242	85536242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TCF7L1	NM_031283	exon12	c.T1424C	p.M475T	GGAGCATGCTGGA	.	264.0	89.0	307.0	1.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
EIF5B	9669	hgsc.bcm.edu	hg19	2	100015354	100015354	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	EIF5B	NM_015904	exon23	c.A3537C	p.T1179T	AGCTACAGATATT	.	86.0	33.0	81.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
CXCR4	7852	hgsc.bcm.edu	hg19	2	136873381	136873381	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	CXCR4,NS,carcinoma,0,1	CXCR4	NM_001008540	exon1	c.C129A	p.I43I	CAGGAAGATTTTA	.	163.0	61.0	145.0	1.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196749321	196749321	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	DNAH7	NM_018897	exon35	c.A5751G	p.Q1917Q	GACAAATTGATAA	.	106.0	33.0	83.0	0.0	.	512	.	.	.	none	.	.	PASS	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	hg19	2	212426810	212426810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ERBB4	NM_001042599	exon20	c.G2305T	p.A769S	TCAGAGCTTCCTG	.	107.0	42.0	80.0	0.0	.	480	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO45	200933	hgsc.bcm.edu	hg19	3	196304554	196304554	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	FBXO45	NM_001105573	exon2	c.A549T	p.Q183H	GTGCCAAGGTTAT	.	27.0	23.0	31.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	hg19	5	16764479	16764479	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MYO10	NM_012334	exon12	c.C1206A	p.A402A	AGCCATGGCCAGG	.	103.0	44.0	111.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
PARP8	79668	hgsc.bcm.edu	hg19	5	50137860	50137860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PARP8	NM_001178055	exon27	c.A2523T	p.K841N	TCACAAAGAGATC	.	101.0	43.0	112.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	89989974	89989974	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	GPR98	NM_032119	exon33	c.A7401T	p.T2467T	GATGACATCATGG	.	51.0	23.0	52.0	0.0	.	605	.	.	.	none	.	.	PASS	Atlas-SNP
CRIP3	401262	hgsc.bcm.edu	hg19	6	43275360	43275360	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CRIP3	NM_206922	exon4	c.A318G	p.Q106Q	CTTGCCTTGGGGG	.	121.0	46.0	99.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
OGFRL1	79627	hgsc.bcm.edu	hg19	6	72011098	72011098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	OGFRL1	NM_024576	exon7	c.C702A	p.H234Q	CCAGCACAACTAT	.	745.0	267.0	782.0	1.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152658075	152658075	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SYNE1	NM_182961	exon76	c.G12429C	p.W4143C	GTAAATCCAGAGC	.	73.0	22.0	106.0	0.0	.	3227	.	.	.	none	.	.	PASS	Atlas-SNP
RNF216	54476	hgsc.bcm.edu	hg19	7	5781025	5781025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RNF216	NM_207111	exon4	c.T623C	p.L208P	GATAACAGCTCTG	.	350.0	117.0	328.0	1.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
OR2A14	135941	hgsc.bcm.edu	hg19	7	143826220	143826220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	OR2A14	NM_001001659	exon1	c.G15T	p.K5N	CAACAAGACATGG	.	53.0	23.0	57.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
ENTPD7	57089	hgsc.bcm.edu	hg19	10	101460770	101460770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ENTPD7	NM_020354	exon11	c.T1376G	p.F459C	AGAGATTCAAGAA	.	272.0	93.0	407.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
DPF2	5977	hgsc.bcm.edu	hg19	11	65113198	65113198	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	DPF2	NM_006268	exon7	c.G699A	p.L233L	CCACTTGGCTGAG	.	66.0	27.0	81.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
SPTBN2	6712	hgsc.bcm.edu	hg19	11	66468283	66468283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SPTBN2	NM_006946	exon16	c.C3287A	p.T1096N	GGCAGGGTGGCCG	.	27.0	15.0	51.0	0.0	.	188	.	.	.	none	.	.	PASS	Atlas-SNP
PCF11	51585	hgsc.bcm.edu	hg19	11	82877600	82877600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PCF11	NM_015885	exon5	c.A1661G	p.D554G	TTCGGGATCCAAG	.	73.0	19.0	81.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
SNX19	399979	hgsc.bcm.edu	hg19	11	130785820	130785820	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SNX19	NM_014758	exon1	c.A15T	p.T5T	TGGCACTGTTTCT	.	29.0	13.0	56.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	hg19	12	7045767	7045767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ATN1	NM_001007026	exon5	c.C1337A	p.P446H	CACCTCCTCCCTA	.	366.0	144.0	377.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
PITPNM2	57605	hgsc.bcm.edu	hg19	12	123479959	123479959	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PITPNM2	NM_020845	exon13	c.G2031A	p.Q677Q	GTGCTGCTGGATG	.	150.0	43.0	104.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
TTC7B	145567	hgsc.bcm.edu	hg19	14	91161893	91161893	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TTC7B	NM_001010854	exon6	c.G728C	p.R243T	AGCTCTCTAAATC	.	42.0	23.0	64.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
TYRO3	7301	hgsc.bcm.edu	hg19	15	41854918	41854918	+	Splice_Site	SNP	T	T	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TYRO3	NM_006293	exon4	c.580+2T>G	.	AACAGGTGAGCAG	.	31.0	8.0	23.0	0.0	.	169	.	.	.	none	.	.	PASS	Atlas-SNP
MAPKBP1	23005	hgsc.bcm.edu	hg19	15	42105966	42105966	+	Missense_Mutation	SNP	G	G	A	rs374717785		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	MAPKBP1,colon,carcinoma,0,1	MAPKBP1	NM_001128608	exon10	c.G985A	p.V329I	GCTAGCGTCACCG	.	153.0	42.0	180.0	0.0	.	120	.	.	.	weak	.	.	PASS	Atlas-SNP
AP4E1	23431	hgsc.bcm.edu	hg19	15	51289917	51289917	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	AP4E1	NM_007347	exon18	c.T2741A	p.I914K	AATACATACACTC	.	146.0	65.0	117.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
PIAS1	8554	hgsc.bcm.edu	hg19	15	68479999	68479999	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PIAS1	NM_016166	exon14	c.T1782C	p.S594S	GTTAAGTGCAGGA	.	77.0	34.0	66.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF688	146542	hgsc.bcm.edu	hg19	16	30581595	30581595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ZNF688	NM_145271	exon3	c.C473T	p.A158V	TCCCAGGCAGCAT	.	46.0	19.0	38.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
RPGRIP1L	23322	hgsc.bcm.edu	hg19	16	53708941	53708941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RPGRIP1L	NM_001127897	exon7	c.T870G	p.I290M	AAGCTGAATAAAT	.	71.0	31.0	68.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
CHRNB1	1140	hgsc.bcm.edu	hg19	17	7357711	7357711	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CHRNB1	NM_000747	exon8	c.C916G	p.P306A	TCAGTACCCATTA	.	214.0	60.0	183.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
MYL4	4635	hgsc.bcm.edu	hg19	17	45286883	45286883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MYL4	NM_001002841	exon2	c.A95G	p.E32G	CTCCTGAGGCTCC	.	104.0	5.0	115.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
HDHD2	84064	hgsc.bcm.edu	hg19	18	44639349	44639349	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	HDHD2	NM_032124	exon6	c.T675A	p.T225T	CATACCAGTCTTT	.	86.0	28.0	72.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9083127	9083127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MUC16	NM_024690	exon1	c.G8688T	p.E2896D	TGGGACCTCAGAA	.	29.0	6.0	46.0	0.0	.	4315	.	.	.	none	.	.	PASS	Atlas-SNP
IRF2BP1	26145	hgsc.bcm.edu	hg19	19	46387423	46387423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	IRF2BP1	NM_015649	exon1	c.C1610T	p.A537V	CCCTGCGCCTTGA	.	67.0	7.0	73.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
FAM71E1	112703	hgsc.bcm.edu	hg19	19	50970929	50970929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	FAM71E1	NM_138411	exon4	c.C649T	p.R217C	GCAGGCGGTAGAG	.	11.0	4.0	14.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
ZFP28	140612	hgsc.bcm.edu	hg19	19	57066282	57066282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ZFP28	NM_020828	exon8	c.T2128C	p.F710L	AAGGCCTTTGGTG	.	128.0	45.0	124.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
ZFP28	140612	hgsc.bcm.edu	hg19	19	57066298	57066298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ZFP28	NM_020828	exon8	c.C2144A	p.S715Y	ACTCATCCTGTAC	.	130.0	45.0	129.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
NCOA6	23054	hgsc.bcm.edu	hg19	20	33329544	33329544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	NCOA6	NM_014071	exon11	c.A4516G	p.K1506E	GGGGTTTAATTGT	.	107.0	43.0	132.0	0.0	.	219	.	.	.	none	.	.	PASS	Atlas-SNP
SLC5A3	6526	hgsc.bcm.edu	hg19	21	35468362	35468362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SLC5A3	NM_006933	exon2	c.G865A	p.A289T	CTTGCAGCCAAAA	.	190.0	80.0	217.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
POTEH	23784	hgsc.bcm.edu	hg19	22	16287580	16287580	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	POTEH,caecum,carcinoma,0,1	POTEH	NM_001136213	exon1	c.C306A	p.C102X	GTGGCAGCACCAC	.	417.0	167.0	1092.0	2.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
CENPM	79019	hgsc.bcm.edu	hg19	22	42342456	42342456	+	Silent	SNP	C	C	G	rs372178394	alternate_allele	TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CENPM	NM_024053	exon2	c.G102C	p.S34S	GAGCATCGAGTCC	.	32.0	4.0	39.0	0.0	.	8	.	.	.	alt	.	.	PASS	Atlas-SNP
TAF1	6872	hgsc.bcm.edu	hg19	X	70643918	70643918	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TAF1	NM_004606	exon31	c.4728+2T>C	.	GTAAGGTGAGTGA	.	65.0	49.0	73.0	0.0	.	439	.	.	.	none	.	.	PASS	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	hg19	X	123518587	123518587	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	.	NM_001163278	exon30	c.C6194G	p.T2065S	AAAGGGGTTTCAT	.	97.0	81.0	117.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
WDR33	55339	hgsc.bcm.edu	hg19	2	128484249	128484249	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	WDR33	NM_018383	exon8	c.828delG	p.K276fs	.	.	136.0	38.0	130.0	0.0	.	136	.	0.279412	0	none	.	.	PASS	Atlas-INDEL
SMARCB1	6598	hgsc.bcm.edu	hg19	22	24167461	24167461	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SMARCB1	NM_003073	exon7	c.844delG	p.D282fs	.	.	75.0	57.0	92.0	0.0	.	586	.	0.76	0	none	.	.	PASS	Atlas-INDEL
TRIM41	90933	hgsc.bcm.edu	hg19	5	180661231	180661232	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TRIM41	NM_033549	exon6	c.1349_1350insC	p.R450fs	.	.	104.0	38.0	121.0	0.0	.	96	.	0.365385	0	none	.	.	PASS	Atlas-INDEL
BIVM-ERCC5	0	hgsc.bcm.edu	hg19	13	103510748	103510748	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	.	NM_001204425	exon14	c.2013delA	p.T671fs	.	.	144.0	51.0	132.0	0.0	.	.	.	0.354167	0	none	.	.	PASS	Atlas-INDEL
SPEF2	79925	hgsc.bcm.edu	hg19	5	35771741	35771743	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SPEF2	NM_024867	exon27	c.3831_3833del	p.1277_1278del	.	.	58.0	12.0	54.0	0.0	.	324	.	0.206897	0	none	.	.	PASS	Atlas-INDEL
IFNA2	3440	hgsc.bcm.edu	hg19	9	21385064	21385067	+	Frame_Shift_Del	DEL	GATT	GATT	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	GATT	GATT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	IFNA2	NM_000605	exon1	c.263_266del	p.88_89del	.	.	215.0	87.0	216.0	0.0	.	32	.	0.404651	0	none	.	.	PASS	Atlas-INDEL