Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
CTRC	11330	hgsc.bcm.edu	hg19	1	15766798	15766798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CTRC	NM_007272	exon2	c.T43C	p.S15P	CCAGCCTCCAGCT	.	26.0	4.0	15.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
BCAN	63827	hgsc.bcm.edu	hg19	1	156628454	156628454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	BCAN	NM_021948	exon13	c.C2557A	p.L853M	CGCAATCTGCCGC	.	203.0	83.0	138.0	0.0	.	174	.	.	.	none	.	.	PASS	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186072770	186072770	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	HMCN1	NM_031935	exon69	c.A10740G	p.G3580G	AGGAGGAGGAGAG	.	74.0	18.0	61.0	0.0	.	797	.	.	.	none	.	.	PASS	Atlas-SNP
EXOC8	149371	hgsc.bcm.edu	hg19	1	231472695	231472695	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	EXOC8	NM_175876	exon1	c.A797T	p.N266I	TTAGCATTTTCGG	.	172.0	67.0	123.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	hg19	2	15542368	15542368	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NBAS	NM_015909	exon26	c.A2995C	p.I999L	TATAGATGCACTC	.	137.0	43.0	145.0	0.0	.	246	.	.	.	none	.	.	PASS	Atlas-SNP
CENPA	1058	hgsc.bcm.edu	hg19	2	27016052	27016052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CENPA	NM_001809	exon4	c.T328C	p.Y110H	GACGCCTATCTCC	.	433.0	159.0	336.0	1.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
SLC5A6	8884	hgsc.bcm.edu	hg19	2	27427450	27427450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SLC5A6	NM_021095	exon9	c.A884G	p.Y295C	ACTGCATAACAGG	.	104.0	35.0	55.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
TTC27	55622	hgsc.bcm.edu	hg19	2	33036148	33036148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TTC27	NM_017735	exon17	c.G2056A	p.V686I	GGAGATGTTGCAA	.	130.0	51.0	111.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
PSME4	23198	hgsc.bcm.edu	hg19	2	54125075	54125075	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	PSME4	NM_014614	exon31	c.G3538C	p.V1180L	GCAACACTCGGTC	.	162.0	44.0	132.0	0.0	.	247	.	.	.	none	.	.	PASS	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	hg19	2	109392304	109392304	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	RANBP2	NM_006267	exon24	c.T8409C	p.I2803I	ATCCATTAGTTCA	.	113.0	46.0	113.0	0.0	.	488	.	.	.	none	.	.	PASS	Atlas-SNP
ORC2	4999	hgsc.bcm.edu	hg19	2	201790562	201790562	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ORC2	NM_006190	exon13	c.G1144T	p.E382X	TACCTTCTTTAAA	.	168.0	49.0	130.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
UGT1A8	54576	hgsc.bcm.edu	hg19	2	234526363	234526363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	UGT1A8,NS,carcinoma,0,2	UGT1A8	NM_019076	exon1	c.A10G	p.T4A	GCTCGCACAGGGT	.	83.0	4.0	71.0	1.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
KAT2B	8850	hgsc.bcm.edu	hg19	3	20187858	20187858	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	KAT2B	NM_003884	exon14	c.C2055T	p.Y685Y	AGTTTACCCTGGA	.	146.0	70.0	209.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52439900	52439900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	BAP1	NM_004656	exon10	c.T812C	p.I271T	GTCTGAATCAGCT	.	37.0	14.0	66.0	0.0	.	371	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC80	151887	hgsc.bcm.edu	hg19	3	112324460	112324460	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CCDC80	NM_199511	exon8	c.T2657A	p.M886K	ATCACCATGGACC	.	51.0	20.0	76.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
MCF2L2	23101	hgsc.bcm.edu	hg19	3	183013205	183013205	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MCF2L2	NM_015078	exon13	c.C1558T	p.Q520X	TCACTTGCCTCTT	.	118.0	39.0	87.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM2	23321	hgsc.bcm.edu	hg19	4	154249812	154249812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TRIM2	NM_015271	exon11	c.G2153A	p.S718N	GAAACAGCAGGAT	.	121.0	44.0	88.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187541246	187541246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FAT1	NM_005245	exon10	c.C6494T	p.S2165L	TCCGCTGAAAAGG	.	55.0	5.0	58.0	0.0	.	500	.	.	.	none	.	.	PASS	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71479648	71479648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MAP1B	NM_005909	exon3	c.C365A	p.T122N	TCAGCACCGAGGT	.	143.0	44.0	109.0	0.0	.	243	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	hg19	5	73165934	73165934	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	.	NM_001080479	exon21	c.T2466A	p.D822E	CAGTGATGCCCAG	.	185.0	67.0	168.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SNCAIP	9627	hgsc.bcm.edu	hg19	5	121787084	121787084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SNCAIP	NM_005460	exon10	c.T2542G	p.S848A	CGGACCTCCACAA	.	96.0	31.0	104.0	0.0	.	308	.	.	.	none	.	.	PASS	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150946163	150946163	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FAT2	NM_001447	exon1	c.C2330G	p.P777R	TCCAAGGGAGCAG	.	69.0	25.0	68.0	0.0	.	465	.	.	.	none	.	.	PASS	Atlas-SNP
ATP6V0E1	8992	hgsc.bcm.edu	hg19	5	172410944	172410944	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ATP6V0E1	NM_003945	exon1	c.C81T	p.F27F	TTGGTTCATCCCT	.	261.0	93.0	228.0	0.0	.	3	.	.	.	none	.	.	PASS	Atlas-SNP
DSP	1832	hgsc.bcm.edu	hg19	6	7562980	7562980	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	DSP	NM_004415	exon5	c.T693A	p.Y231X	CGACTATCGCTGG	.	117.0	82.0	97.0	0.0	.	306	.	.	.	none	.	.	PASS	Atlas-SNP
HCRTR2	3062	hgsc.bcm.edu	hg19	6	55142265	55142265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	HCRTR2	NM_001526	exon5	c.T850C	p.S284P	ACGAAGTCCCGGA	.	75.0	28.0	57.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
AMD1	262	hgsc.bcm.edu	hg19	6	111213388	111213388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	AMD1	NM_001634	exon5	c.G452A	p.R151H	TGGGACGTATGAA	.	392.0	130.0	358.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
MTFR2	113115	hgsc.bcm.edu	hg19	6	136562761	136562761	+	Missense_Mutation	SNP	C	C	T	rs150447506		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	.	NM_138419	exon5	c.G335A	p.R112Q	ACTAGTCGCAAAG	.	108.0	26.0	110.0	0.0	.	.	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48284203	48284203	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ABCA13	NM_152701	exon11	c.G1293A	p.L431L	AAGCTTGCTGCAA	.	54.0	21.0	47.0	0.0	.	1192	.	.	.	none	.	.	PASS	Atlas-SNP
SPINK4	27290	hgsc.bcm.edu	hg19	9	33246702	33246702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SPINK4	NM_014471	exon3	c.A191G	p.E64G	CGAATGAATGCCA	.	128.0	39.0	86.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	55626411	55626411	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	PCDH15	NM_001142763	exon28	c.C3723T	p.A1241A	TACATCGGCTTTG	.	118.0	31.0	71.0	0.0	.	1715	.	.	.	none	.	.	PASS	Atlas-SNP
TTC18	118491	hgsc.bcm.edu	hg19	10	75037057	75037057	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TTC18	NM_145170	exon22	c.C2671T	p.Q891X	TAGTTTGAGAAAC	.	195.0	64.0	161.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
WDR96	80217	hgsc.bcm.edu	hg19	10	105944865	105944865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	WDR96,NS,carcinoma,0,1	WDR96	NM_025145	exon16	c.C2050A	p.H684N	TCCCATGACCCTG	.	150.0	52.0	127.0	1.0	.	183	.	.	.	none	.	.	PASS	Atlas-SNP
LSP1	4046	hgsc.bcm.edu	hg19	11	1907965	1907965	+	Missense_Mutation	SNP	G	G	T	rs370626038	alternate_allele	TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	LSP1	NM_001242932	exon9	c.G1105T	p.A369S	CAGACCGCTGGCC	.	106.0	44.0	147.0	0.0	.	59	.	.	.	alt	.	.	PASS	Atlas-SNP
TNKS1BP1	85456	hgsc.bcm.edu	hg19	11	57080232	57080232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TNKS1BP1	NM_033396	exon5	c.C1930A	p.L644M	CAGGCAGTGCCTG	.	62.0	17.0	72.0	0.0	.	148	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1C	775	hgsc.bcm.edu	hg19	12	2760913	2760913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CACNA1C	NM_199460	exon34	c.G4197T	p.W1399C	GCTGTGGACCTTC	.	50.0	14.0	30.0	0.0	.	1023	.	.	.	none	.	.	PASS	Atlas-SNP
GPR133	283383	hgsc.bcm.edu	hg19	12	131439188	131439188	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	GPR133	NM_198827	exon2	c.G86C	p.R29T	ACTCCAGATCGCA	.	163.0	37.0	119.0	0.0	.	136	.	.	.	none	.	.	PASS	Atlas-SNP
JPH4	84502	hgsc.bcm.edu	hg19	14	24040204	24040204	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	JPH4	NM_001146028	exon5	c.G1736C	p.G579A	TCAGGACCCCTCG	.	46.0	15.0	55.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO33	254170	hgsc.bcm.edu	hg19	14	39868808	39868808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FBXO33	NM_203301	exon4	c.C1580T	p.A527V	ATGACTGCATGCC	.	52.0	18.0	60.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
NUMB	8650	hgsc.bcm.edu	hg19	14	73750966	73750966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NUMB	NM_001005744	exon10	c.C772T	p.P258S	CATGAGGATTGTT	.	210.0	62.0	186.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
CLMN	79789	hgsc.bcm.edu	hg19	14	95660233	95660233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CLMN	NM_024734	exon12	c.G2793C	p.L931F	GTTCCTCAACTGA	.	100.0	19.0	88.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
AK7	122481	hgsc.bcm.edu	hg19	14	96924426	96924426	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	AK7	NM_152327	exon12	c.A1234T	p.I412F	GAGGCGATTGTTG	.	70.0	20.0	43.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
DUOX1	53905	hgsc.bcm.edu	hg19	15	45445603	45445603	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	DUOX1	NM_017434	exon27	c.G3450C	p.V1150V	TGTGGTGAATGTG	.	194.0	69.0	167.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
CILP	8483	hgsc.bcm.edu	hg19	15	65490142	65490142	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CILP	NM_003613	exon9	c.C2482T	p.L828L	CAGCCAGGCTTGC	.	98.0	31.0	118.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	hg19	16	2817459	2817459	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SRRM2	NM_016333	exon11	c.T6930C	p.S2310S	TCTGAGTCTCACA	.	501.0	143.0	409.0	1.0	.	263	.	.	.	none	.	.	PASS	Atlas-SNP
ANKS4B	257629	hgsc.bcm.edu	hg19	16	21261659	21261659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ANKS4B	NM_145865	exon2	c.G772A	p.G258S	GAGGACGGCAGTG	.	90.0	17.0	96.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	hg19	16	51174769	51174769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SALL1	NM_002968	exon2	c.C1364G	p.A455G	ACCTTCGCGCAGA	.	188.0	57.0	132.0	0.0	.	301	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A2	6530	hgsc.bcm.edu	hg19	16	55705980	55705980	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SLC6A2	NM_001172501	exon4	c.C537T	p.T179T	CCACACCTGGAAC	.	66.0	15.0	61.0	0.0	.	189	.	.	.	none	.	.	PASS	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	hg19	17	10366488	10366488	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MYH4	NM_017533	exon10	c.C823T	p.R275X	TAACTCGGGACTT	.	103.0	20.0	69.0	0.0	.	349	.	.	.	none	.	.	PASS	Atlas-SNP
PLD6	201164	hgsc.bcm.edu	hg19	17	17106274	17106274	+	Missense_Mutation	SNP	G	G	A	rs139543758	alternate_allele	TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	PLD6	NM_178836	exon2	c.C566T	p.T189M	TCCTCCGTGATGA	.	109.0	29.0	82.0	0.0	.	9	.	.	.	alt	G|1.000;T|0.000	.	PASS	Atlas-SNP
MYO15A	51168	hgsc.bcm.edu	hg19	17	18039921	18039921	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MYO15A	NM_016239	exon14	c.T4700G	p.L1567R	GCTGGCTCATCAC	.	71.0	19.0	61.0	0.0	.	268	.	.	.	none	.	.	PASS	Atlas-SNP
NSF	4905	hgsc.bcm.edu	hg19	17	44806264	44806264	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NSF	NM_006178	exon17	c.G1872A	p.Q624Q	ATTACAGGCTCTT	.	118.0	40.0	148.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
USP32	84669	hgsc.bcm.edu	hg19	17	58348812	58348812	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	USP32	NM_032582	exon6	c.A602C	p.K201T	TAGCGTTTCTCAA	.	138.0	42.0	81.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
SPHK1	8877	hgsc.bcm.edu	hg19	17	74383269	74383269	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SPHK1	NM_182965	exon6	c.C1015G	p.P339A	GTGGTGCCCGACG	.	37.0	8.0	24.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
DCC	1630	hgsc.bcm.edu	hg19	18	51025752	51025752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	DCC	NM_005215	exon27	c.G3983T	p.S1328I	CACCAAGCAGAAC	.	96.0	53.0	142.0	0.0	.	360	.	.	.	none	.	.	PASS	Atlas-SNP
BTBD2	55643	hgsc.bcm.edu	hg19	19	1986877	1986877	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	BTBD2	NM_017797	exon8	c.G1368C	p.P456P	CTCCACCGGCTCC	.	62.0	12.0	59.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
SLC44A2	57153	hgsc.bcm.edu	hg19	19	10745556	10745556	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SLC44A2	NM_020428	exon11	c.G948C	p.L316F	CTGGTTGGCCTTT	.	206.0	58.0	166.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF823	55552	hgsc.bcm.edu	hg19	19	11833231	11833231	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ZNF823	NM_001080493	exon4	c.C1118G	p.S373W	AAGCTCGAGCTAT	.	154.0	47.0	126.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
ZFP82	284406	hgsc.bcm.edu	hg19	19	36883897	36883897	+	Missense_Mutation	SNP	G	G	T	rs143115887	alternate_allele	TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	ZFP82,upper_arm,malignant_melanoma,0,1	ZFP82	NM_133466	exon5	c.C1345A	p.P449T	TATAAGGTTTCTC	.	170.0	54.0	164.0	0.0	.	71	.	.	.	alt	.	.	PASS	Atlas-SNP
CPT1C	126129	hgsc.bcm.edu	hg19	19	50200612	50200612	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CPT1C	NM_001199752	exon4	c.C171A	p.A57A	TCCTGCCAGCCCC	.	101.0	27.0	87.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF613	79898	hgsc.bcm.edu	hg19	19	52447643	52447643	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ZNF613	NM_001031721	exon6	c.T507A	p.H169Q	CAAGCATGAACAA	.	196.0	77.0	203.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF341	84905	hgsc.bcm.edu	hg19	20	32357951	32357951	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ZNF341	NM_032819	exon10	c.A1454C	p.E485A	TTCTGGAGCACAT	.	43.0	15.0	40.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
CECR6	27439	hgsc.bcm.edu	hg19	22	17600589	17600589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	CECR6,colon,carcinoma,0,1	CECR6	NM_031890	exon1	c.G1429C	p.V477L	CGTCCACCAGGCA	.	5.0	2.0	1.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
CABIN1	23523	hgsc.bcm.edu	hg19	22	24447376	24447376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CABIN1	NM_001199281	exon8	c.C746T	p.A249V	GGCAAGCGCTGAT	.	58.0	25.0	68.0	0.0	.	153	.	.	.	none	.	.	PASS	Atlas-SNP
NF2	4771	hgsc.bcm.edu	hg19	22	30050709	30050709	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NF2	NM_000268	exon5	c.A511T	p.K171X	CTTCCAAAAAGGG	.	145.0	73.0	209.0	0.0	.	1312	.	.	.	none	.	.	PASS	Atlas-SNP
GRAMD1A	57655	hgsc.bcm.edu	hg19	19	35500801	35500802	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	GRAMD1A	NM_020895	exon4	c.250_251insCA	p.P84fs	.	.	147.0	50.0	142.0	0.0	.	39	.	0.340136	0	none	.	.	PASS	Atlas-INDEL
RGPD4	285190	hgsc.bcm.edu	hg19	2	108489365	108489366	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	RGPD4	NM_182588	exon20	c.4905_4906insT	p.T1635fs	.	.	478.0	43.0	406.0	0.0	.	112	.	0.0899582	0	none	.	.	PASS	Atlas-INDEL
NYNRIN	57523	hgsc.bcm.edu	hg19	14	24885007	24885007	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NYNRIN	NM_025081	exon9	c.4051delA	p.T1351fs	.	.	152.0	48.0	120.0	0.0	.	120	.	0.315789	0	none	.	.	PASS	Atlas-INDEL
THUMPD2	80745	hgsc.bcm.edu	hg19	2	39983057	39983058	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	THUMPD2	NM_025264	exon7	c.935_936insA	p.I312fs	.	.	98.0	32.0	101.0	0.0	.	35	.	0.326531	0	none	.	.	PASS	Atlas-INDEL
PPM1F	9647	hgsc.bcm.edu	hg19	22	22285579	22285579	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	PPM1F	NM_014634	exon6	c.833delT	p.I278fs	.	.	90.0	41.0	109.0	0.0	.	34	.	0.455556	0	none	.	.	PASS	Atlas-INDEL
XKR4	114786	hgsc.bcm.edu	hg19	8	56015502	56015504	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	XKR4,NS,carcinoma,0,1	XKR4	NM_052898	exon1	c.453_455del	p.151_152del	.	.	80.0	22.0	57.0	0.0	.	104	.	0.275	0	none	.	.	PASS	Atlas-INDEL
TG	7038	hgsc.bcm.edu	hg19	8	133898849	133898849	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TG	NM_003235	exon9	c.1231delA	p.T411fs	.	.	368.0	113.0	258.0	0.0	.	416	.	0.307065	0	none	.	.	PASS	Atlas-INDEL
MEFV	4210	hgsc.bcm.edu	hg19	16	3297239	3297240	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MEFV	NM_000243	exon5	c.1364_1365insA	p.T455fs	.	.	146.0	45.0	96.0	0.0	.	170	.	0.308219	0	none	.	.	PASS	Atlas-INDEL
RGPD2	729857	hgsc.bcm.edu	hg19	2	88081658	88081659	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	RGPD2	NM_001078170	exon20	c.4885_4886insT	p.K1629_T1630delinsX	.	.	532.0	88.0	417.0	0.0	.	14	.	0.165414	0	none	.	.	PASS	Atlas-INDEL
CADM2	253559	hgsc.bcm.edu	hg19	3	86114798	86114799	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CADM2	NM_153184	exon9	c.1113_1114insT	p.L371fs	.	.	62.0	28.0	82.0	0.0	.	195	.	0.451613	0	none	.	.	PASS	Atlas-INDEL
FAT1	2195	hgsc.bcm.edu	hg19	4	187541245	187541245	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FAT1	NM_005245	exon10	c.6496delG	p.A2166fs	.	.	79.0	26.0	55.0	0.0	.	500	.	0.329114	0	none	.	.	PASS	Atlas-INDEL
EBF3	253738	hgsc.bcm.edu	hg19	10	131755589	131755589	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	EBF3	NM_001005463	exon6	c.488delG	p.R163fs	.	.	181.0	50.0	142.0	0.0	.	193	.	0.276243	0	none	.	.	PASS	Atlas-INDEL
KIF21B	23046	hgsc.bcm.edu	hg19	1	200974516	200974517	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	KIF21B	NM_017596	exon5	c.652_653del	p.218_218del	.	.	142.0	48.0	96.0	0.0	.	208	.	0.338028	0	none	.	.	PASS	Atlas-INDEL
SETD2	29072	hgsc.bcm.edu	hg19	3	47161751	47161757	+	Frame_Shift_Del	DEL	GCTGTGG	GCTGTGG	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	GCTGTGG	GCTGTGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SETD2	NM_014159	exon3	c.4370_4376del	p.1457_1459del	.	.	92.0	40.0	180.0	0.0	.	721	.	0.434783	0	none	.	.	PASS	Atlas-INDEL
IRX5	10265	hgsc.bcm.edu	hg19	16	54966812	54966813	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	IRX5	NM_001252197	exon2	c.651_652del	p.217_218del	.	.	225.0	71.0	172.0	0.0	.	41	.	0.315556	0	none	.	.	PASS	Atlas-INDEL
CPXM1	56265	hgsc.bcm.edu	hg19	20	2775062	2775063	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CPXM1	NM_019609	exon14	c.1979_1980insT	p.Y660fs	.	.	73.0	28.0	66.0	0.0	.	107	.	0.383562	0	none	.	.	PASS	Atlas-INDEL