Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
EMC1	23065	hgsc.bcm.edu	hg19	1	19545821	19545821	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	.	NM_015047	exon23	c.G2958A	p.K986K	CAGGAGCTTCACC	.	75.0	4.0	75.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
KIF3C	3797	hgsc.bcm.edu	hg19	2	26203576	26203576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	KIF3C	NM_002254	exon1	c.C1211T	p.P404L	CTCCGGGGCCGCT	.	119.0	5.0	124.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
SMPD4	55627	hgsc.bcm.edu	hg19	2	130931124	130931124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	SMPD4	NM_017751	exon4	c.G349A	p.V117M	ACTCCACAGGATT	.	50.0	7.0	39.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM71	131405	hgsc.bcm.edu	hg19	3	32927537	32927537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	TRIM71,NS,carcinoma,0,1	TRIM71	NM_001039111	exon3	c.C1132A	p.R378S	GAGGAACGCGAGT	.	65.0	3.0	50.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
ENTPD3	956	hgsc.bcm.edu	hg19	3	40465427	40465427	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ENTPD3	NM_001248	exon10	c.T1326A	p.T442T	GGAGACTTGGCCC	.	179.0	9.0	141.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
CENPC1	1060	hgsc.bcm.edu	hg19	4	68338326	68338326	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	CENPC1	NM_001812	exon19	c.A2829T	p.R943S	CTTTCATCTTTTT	.	9.0	8.0	2.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123264653	123264653	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	KIAA1109	NM_015312	exon71	c.C12441G	p.G4147G	ATCTGGCTTGAGC	.	91.0	7.0	111.0	0.0	.	424	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHA9	9752	hgsc.bcm.edu	hg19	5	140229899	140229899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	PCDHA9	NM_031857	exon1	c.C1819T	p.L607F	GCGTGGCTTTCAT	.	110.0	9.0	82.0	0.0	.	373	.	.	.	none	.	.	PASS	Atlas-SNP
KCNB2	9312	hgsc.bcm.edu	hg19	8	73850210	73850210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	KCNB2	NM_004770	exon3	c.G2620T	p.V874F	AGTGAAGTCAAAA	.	112.0	5.0	98.0	0.0	.	228	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM2	23670	hgsc.bcm.edu	hg19	9	74300679	74300679	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	TMEM2	NM_013390	exon23	c.C3935G	p.P1312R	TGAGCTGGTTTGG	.	106.0	8.0	107.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
TDRD1	56165	hgsc.bcm.edu	hg19	10	115978231	115978231	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	TDRD1	NM_198795	exon18	c.A2382T	p.K794N	TGTTAAAGTACAT	.	195.0	13.0	196.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
MMP21	118856	hgsc.bcm.edu	hg19	10	127459092	127459092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MMP21	NM_147191	exon5	c.G1048A	p.V350M	CCATCACCTCTCC	.	148.0	8.0	108.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
DCPS	28960	hgsc.bcm.edu	hg19	11	126201299	126201299	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	DCPS	NM_014026	exon3	c.377-1G>T	.	ATTGCAGATGTAA	.	200.0	12.0	191.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	hg19	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	bycluster	TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	KRAS_ENST00000256078,NS,adenocarcinoma,0,66	KRAS	NM_004985	exon2	c.G35A	p.G12D	ACGCCACCAGCTC	.	40.0	13.0	36.0	0.0	.	30930	.	.	.	weak	.	.	PASS	Atlas-SNP
OR10AD1	121275	hgsc.bcm.edu	hg19	12	48596939	48596939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	OR10AD1	NM_001004134	exon1	c.T137C	p.I46T	ATAAAGATGATGA	.	53.0	5.0	45.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
STON2	85439	hgsc.bcm.edu	hg19	14	81862455	81862455	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	STON2	NM_001256430	exon4	c.G156C	p.E52D	ATGGTTCTCCCCG	.	82.0	7.0	90.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
MFAP1	4236	hgsc.bcm.edu	hg19	15	44109600	44109600	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MFAP1	NM_005926	exon2	c.A126C	p.G42G	CCTTTTTCCGGAC	.	214.0	12.0	184.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
RBBP8	5932	hgsc.bcm.edu	hg19	18	20573491	20573491	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	RBBP8	NM_203292	exon11	c.C1701G	p.C567W	TAAATGCTCTCCA	.	87.0	5.0	105.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
ZFP30	22835	hgsc.bcm.edu	hg19	19	38126264	38126264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ZFP30	NM_014898	exon6	c.G1178A	p.R393H	GAGTAACGACGAA	.	114.0	5.0	97.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
ARFGEF2	10564	hgsc.bcm.edu	hg19	20	47632919	47632919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ARFGEF2	NM_006420	exon31	c.G4282A	p.V1428I	TCTGATGTATTTG	.	147.0	43.0	132.0	0.0	.	160	.	.	.	none	.	.	PASS	Atlas-SNP
MMP11	4320	hgsc.bcm.edu	hg19	22	24123480	24123480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MMP11	NM_005940	exon6	c.G959A	p.R320H	GCCTCCGTGGGGG	.	77.0	21.0	75.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
CERS3	204219	hgsc.bcm.edu	hg19	15	101013174	101013174	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	.	NM_178842	exon10	c.694delA	p.T232fs	.	.	140.0	17.0	147.0	0.0	.	.	.	0.121429	0	none	.	.	PASS	Atlas-INDEL
ADCY8	114	hgsc.bcm.edu	hg19	8	131916171	131916174	+	Frame_Shift_Del	DEL	TAAG	TAAG	-	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	TAAG	TAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	ADCY8,NS,carcinoma,0,1	ADCY8	NM_001115	exon7	c.1756_1759del	p.586_587del	.	.	214.0	22.0	216.0	0.0	.	291	.	0.102804	0	none	.	.	PASS	Atlas-INDEL