Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm EMC1 23065 hgsc.bcm.edu hg19 1 19566346 19566346 + Missense_Mutation SNP T T C novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . . NM_001271427 exon8 c.A920G p.Y307C GTTCCATAATGGT . 81.0 28.0 91.0 0.0 . . . . . none . . PASS Atlas-SNP GFI1 2672 hgsc.bcm.edu hg19 1 92948601 92948601 + Missense_Mutation SNP T T C novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . GFI1 NM_005263 exon3 c.A118G p.S40G AAGTGCTGTCTGC . 55.0 22.0 76.0 0.0 . 41 . . . none . . PASS Atlas-SNP DNM3 26052 hgsc.bcm.edu hg19 1 171810797 171810797 + Missense_Mutation SNP A A C novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . DNM3 NM_001136127 exon1 c.A1C p.M1L GGCAAGATGGGGA . 28.0 11.0 16.0 0.0 . 85 . . . none . . PASS Atlas-SNP MR1 3140 hgsc.bcm.edu hg19 1 181019230 181019230 + Missense_Mutation SNP G G T novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . MR1 NM_001195035 exon4 c.G412T p.G138W TATGACGGGCAGG . 99.0 7.0 112.0 0.0 . 46 . . . none . . PASS Atlas-SNP NPL 80896 hgsc.bcm.edu hg19 1 182775301 182775301 + Missense_Mutation SNP G G C novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . NPL NM_001200052 exon5 c.G164C p.G55A GAGAAGGCCTGTC . 85.0 13.0 77.0 0.0 . 55 . . . none . . PASS Atlas-SNP CYP1B1 1545 hgsc.bcm.edu hg19 2 38302357 38302357 + Missense_Mutation SNP G G C novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . CYP1B1 NM_000104 exon2 c.C175G p.L59V CGATCAGTGGCCA . 12.0 6.0 18.0 0.0 . 39 . . . none . . PASS Atlas-SNP WDR33 55339 hgsc.bcm.edu hg19 2 128526506 128526506 + Splice_Site SNP C C A novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . WDR33 NM_018383 exon4 c.273+1G>T . TACTTACATCATT . 126.0 48.0 142.0 0.0 . 136 . . . none . . PASS Atlas-SNP PRICKLE2 166336 hgsc.bcm.edu hg19 3 64084893 64084893 + Missense_Mutation SNP A A G novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . PRICKLE2 NM_198859 exon8 c.T2369C p.F790S CCTAGGAAATAGC . 84.0 39.0 82.0 0.0 . 88 . . . none . . PASS Atlas-SNP PLD1 5337 hgsc.bcm.edu hg19 3 171394619 171394619 + Silent SNP G G A novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . PLD1 NM_002662 exon18 c.C2001T p.F667F GTCAATGAAATCT . 47.0 19.0 39.0 0.0 . 134 . . . none . . PASS Atlas-SNP SEL1L3 23231 hgsc.bcm.edu hg19 4 25806261 25806261 + Missense_Mutation SNP A A T novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . SEL1L3 NM_015187 exon10 c.T1678A p.F560I TCAGAAAGGGGAC . 55.0 23.0 55.0 0.0 . 62 . . . none . . PASS Atlas-SNP FAM218A 152756 hgsc.bcm.edu hg19 4 165878576 165878576 + Silent SNP T T C novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 C4orf39,right_upper_lobe,carcinoma,0,1 . NM_153027 exon1 c.T402C p.P134P CCAGCCTCTTTTT . 93.0 4.0 79.0 1.0 . . . . . none . . PASS Atlas-SNP CTNND2 1501 hgsc.bcm.edu hg19 5 11117619 11117619 + Silent SNP C C A novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 CTNND2,caecum,carcinoma,0,1 CTNND2 NM_001332 exon13 c.G2220T p.T740T GGCATCCGTAAGC . 198.0 9.0 205.0 1.0 . 289 . . . none . . PASS Atlas-SNP TNPO1 3842 hgsc.bcm.edu hg19 5 72151675 72151675 + Missense_Mutation SNP G G A novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 TNPO1,colon,carcinoma,0,1 TNPO1 NM_002270 exon4 c.G280A p.G94S CCAAATGGTGTAA . 81.0 20.0 95.0 0.0 . 90 . . . none . . PASS Atlas-SNP FGF1 2246 hgsc.bcm.edu hg19 5 141974869 141974869 + Missense_Mutation SNP C C A novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . FGF1 NM_001257209 exon4 c.G454T p.V152F AAGAGACTGGCAG . 105.0 36.0 104.0 0.0 . 9 . . . none . . PASS Atlas-SNP XPO5 57510 hgsc.bcm.edu hg19 6 43541219 43541219 + Silent SNP G G C novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . XPO5 NM_020750 exon2 c.C225G p.V75V TTACTTGACAACG . 433.0 223.0 84.0 0.0 . 79 . . . none . . PASS Atlas-SNP LATS1 9113 hgsc.bcm.edu hg19 6 150005370 150005370 + Silent SNP G G T novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . LATS1 NM_001270519 exon4 c.C855A p.I285I TCGGGAGATTACG . 172.0 77.0 179.0 0.0 . 241 . . . none . . PASS Atlas-SNP ESR1 2099 hgsc.bcm.edu hg19 6 152201893 152201893 + Silent SNP A A G novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . ESR1 NM_000125 exon3 c.A747G p.G249G AGTGGGAATGATG . 41.0 13.0 52.0 0.0 . 94 . . . none . . PASS Atlas-SNP MYCT1 80177 hgsc.bcm.edu hg19 6 153043198 153043198 + Missense_Mutation SNP G G T novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . MYCT1 NM_025107 exon2 c.G518T p.C173F TGCAATGTCCACC . 103.0 46.0 117.0 0.0 . 48 . . . none . . PASS Atlas-SNP TTLL2 83887 hgsc.bcm.edu hg19 6 167755036 167755036 + Missense_Mutation SNP G G T novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . TTLL2 NM_031949 exon3 c.G1648T p.D550Y GCTCCAGATCCCC . 135.0 51.0 142.0 0.0 . 82 . . . none . . PASS Atlas-SNP FOXK1 221937 hgsc.bcm.edu hg19 7 4780549 4780549 + Missense_Mutation SNP C C A novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 KIAA0415_ENST00000450194,colon,carcinoma,0,2 FOXK1 NM_001037165 exon2 c.C641A p.P214Q CCTCCCCGCTGCG . 174.0 10.0 199.0 1.0 . 64 . . . none . . PASS Atlas-SNP TBL2 26608 hgsc.bcm.edu hg19 7 72988278 72988278 + Missense_Mutation SNP G G A novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . TBL2 NM_012453 exon3 c.C436T p.P146S AGTCAGGGCTGAA . 89.0 27.0 110.0 0.0 . 47 . . . none . . PASS Atlas-SNP MFHAS1 9258 hgsc.bcm.edu hg19 8 8750559 8750559 + Missense_Mutation SNP T T C novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . MFHAS1 NM_004225 exon1 c.A10G p.M4V TGTCCATCCCAGC . 15.0 5.0 3.0 0.0 . 58 . . . none . . PASS Atlas-SNP MTUS1 57509 hgsc.bcm.edu hg19 8 17581310 17581310 + Missense_Mutation SNP A A G novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . MTUS1 NM_001001924 exon4 c.T2320C p.S774P CCCATGACGACTG . 137.0 59.0 235.0 1.0 . 144 . . . none . . PASS Atlas-SNP TGFBR1 7046 hgsc.bcm.edu hg19 9 101894937 101894937 + Missense_Mutation SNP C C G novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . TGFBR1 NM_004612 exon3 c.C490G p.P164A GAGGACCCTTCAT . 137.0 43.0 161.0 0.0 . 70 . . . none . . PASS Atlas-SNP ANK3 288 hgsc.bcm.edu hg19 10 61829643 61829643 + Missense_Mutation SNP T T C novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . ANK3 NM_020987 exon37 c.A10996G p.T3666A CTACAGTGGTGTC . 69.0 32.0 70.0 0.0 . 703 . . . none . . PASS Atlas-SNP SFTPD 6441 hgsc.bcm.edu hg19 10 81702148 81702148 + Silent SNP G G C rs2077117 alternate_allele TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . SFTPD NM_003019 exon4 c.C429G p.P143P ACCTTTGGGCCCA . 59.0 22.0 74.0 0.0 . 43 . . . alt . . PASS Atlas-SNP CALHM2 51063 hgsc.bcm.edu hg19 10 105209181 105209181 + Missense_Mutation SNP C C A novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 CALHM2,NS,carcinoma,0,1 CALHM2 NM_015916 exon3 c.G518T p.R173L TCCTCCCGGAAGT . 111.0 8.0 110.0 0.0 . 30 . . . none . . PASS Atlas-SNP ADD3 120 hgsc.bcm.edu hg19 10 111878343 111878343 + Splice_Site SNP A A G novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . ADD3 NM_019903 exon6 c.568-2A>G . TTTTCCAGGTGAA . 82.0 35.0 102.0 0.0 . 89 . . . none . . PASS Atlas-SNP MICALCL 84953 hgsc.bcm.edu hg19 11 12316190 12316190 + Silent SNP C C T novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . MICALCL NM_032867 exon3 c.C1212T p.D404D CAAAGACAAATCT . 181.0 65.0 238.0 0.0 . 59 . . . none . . PASS Atlas-SNP OR8U1 219417 hgsc.bcm.edu hg19 11 56143937 56143937 + Missense_Mutation SNP G G C novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . OR8U1 NM_001005204 exon1 c.G838C p.V280L TACACAGTGATCA . 303.0 13.0 337.0 0.0 . 59 . . . none . . PASS Atlas-SNP C1QTNF5 114902 hgsc.bcm.edu hg19 11 119210071 119210071 + Silent SNP G G C novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . C1QTNF5 NM_015645 exon15 c.C702G p.S234S CCAGTCGGAGTAC . 75.0 26.0 79.0 0.0 . 12 . . . none . . PASS Atlas-SNP LRP6 4040 hgsc.bcm.edu hg19 12 12302076 12302076 + Silent SNP C C T novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . LRP6 NM_002336 exon14 c.G3006A p.V1002V CACAACCACAGTA . 262.0 115.0 282.0 0.0 . 170 . . . none . . PASS Atlas-SNP C12orf54 121273 hgsc.bcm.edu hg19 12 48888593 48888593 + Silent SNP T T C novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . C12orf54 NM_152319 exon8 c.T255C p.P85P AAGGCCTCCAGAT . 183.0 75.0 186.0 0.0 . 11 . . . none . . PASS Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49437679 49437679 + Missense_Mutation SNP A A G novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . MLL2 NM_003482 exon22 c.T5291C p.L1764P TCCTCCAGTTTGC . 119.0 38.0 147.0 0.0 . 1173 . . . none . . PASS Atlas-SNP KLHDC1 122773 hgsc.bcm.edu hg19 14 50196254 50196254 + Missense_Mutation SNP C C G novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . KLHDC1 NM_172193 exon8 c.C698G p.T233S CCTGGACTTGGTC . 61.0 24.0 80.0 0.0 . 24 . . . none . . PASS Atlas-SNP GABRG3 2567 hgsc.bcm.edu hg19 15 27777965 27777965 + Missense_Mutation SNP T T C novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 GABRG3,right_upper_lobe,carcinoma,0,1 GABRG3 NM_033223 exon10 c.T1342C p.F448L CGGGTCTTTTTCC . 62.0 3.0 65.0 0.0 . 115 . . . none . . PASS Atlas-SNP MESDC2 23184 hgsc.bcm.edu hg19 15 81282037 81282037 + Silent SNP G G A novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . MESDC2 NM_015154 exon1 c.C96T p.C32C GGCCGCGCAGGAC . 68.0 33.0 64.0 0.0 . 23 . . . none . . PASS Atlas-SNP RNF157 114804 hgsc.bcm.edu hg19 17 74158077 74158077 + Nonsense_Mutation SNP C C A novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . RNF157 NM_052916 exon10 c.G799T p.E267X CGTCTTCAGCCAC . 67.0 31.0 89.0 0.0 . 66 . . . none . . PASS Atlas-SNP TMC6 11322 hgsc.bcm.edu hg19 17 76115385 76115385 + Missense_Mutation SNP G G C novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . TMC6 NM_001127198 exon14 c.C1804G p.L602V AGGTCAGAGTCTG . 100.0 31.0 130.0 0.0 . 42 . . . none . . PASS Atlas-SNP LGI4 163175 hgsc.bcm.edu hg19 19 35617832 35617832 + Missense_Mutation SNP G G T novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . LGI4 NM_139284 exon7 c.C718A p.P240T CGAAGGGCTGTGC . 334.0 26.0 87.0 0.0 . 32 . . . none . . PASS Atlas-SNP ZNF335 63925 hgsc.bcm.edu hg19 20 44579218 44579218 + Missense_Mutation SNP T T C novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . ZNF335 NM_022095 exon21 c.A3206G p.H1069R CTTGAGTGCTGTG . 229.0 25.0 256.0 0.0 . 115 . . . none . . PASS Atlas-SNP ZBTB46 140685 hgsc.bcm.edu hg19 20 62421455 62421455 + Missense_Mutation SNP C C G novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . ZBTB46 NM_025224 exon2 c.G656C p.G219A ACGTCTCCAGGCC . 59.0 23.0 84.0 0.0 . 72 . . . none . . PASS Atlas-SNP KRTAP27-1 643812 hgsc.bcm.edu hg19 21 31709825 31709825 + Silent SNP G G A novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . KRTAP27-1 NM_001077711 exon1 c.C162T p.C54C TTCATTGCAGGTT . 145.0 50.0 150.0 0.0 . 53 . . . none . . PASS Atlas-SNP SMARCB1 6598 hgsc.bcm.edu hg19 22 24145544 24145544 + Missense_Mutation SNP C C T rs137986695 TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 SMARCB1,arm,malignant_melanoma,0,1 SMARCB1 NM_003073 exon5 c.C563T p.P188L TGGTCCCCATCCG . 114.0 10.0 127.0 0.0 . 586 . . . weak . . PASS Atlas-SNP ENTPD5 957 hgsc.bcm.edu hg19 14 74443764 74443765 + Splice_Site INS - - A novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . ENTPD5 NM_001249 exon9 c.518-2->T . . . 100.0 38.0 144.0 0.0 . 26 . 0.38 0 none . . PASS Atlas-INDEL FNIP1 96459 hgsc.bcm.edu hg19 5 131007378 131007379 + Frame_Shift_Del DEL CT CT - novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . FNIP1 NM_133372 exon14 c.2759_2760del p.920_920del . . 144.0 61.0 139.0 0.0 . 104 . 0.423611 0 none . . PASS Atlas-INDEL BCL2L11 10018 hgsc.bcm.edu hg19 2 111921708 111921716 + In_Frame_Del DEL AGGTATTTT AGGTATTTT - novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 AGGTATTTT AGGTATTTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . BCL2L11 NM_138621 exon4 c.499_504del p.167_168del . . 58.0 13.0 97.0 0.0 . 36 . 0.224138 0 none . . PASS Atlas-INDEL CLTA 1211 hgsc.bcm.edu hg19 9 36211662 36211662 + Frame_Shift_Del DEL G G - novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 CLTA,NS,carcinoma,0,1 CLTA NM_007096 exon7 c.637delC p.R213fs . . 111.0 41.0 153.0 0.0 . 18 . 0.369369 0 none . . PASS Atlas-INDEL KCTD4 386618 hgsc.bcm.edu hg19 13 45768267 45768269 + In_Frame_Del DEL TTA TTA - novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 TTA TTA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . KCTD4 NM_198404 exon2 c.435_437del p.145_146del . . 162.0 15.0 173.0 0.0 . 18 . 0.0925926 0 none . . PASS Atlas-INDEL MKL1 57591 hgsc.bcm.edu hg19 22 40816560 40816562 + In_Frame_Del DEL CCC CCC - novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 CCC CCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . MKL1 NM_020831 exon11 c.901_903del p.301_301del . . 97.0 39.0 139.0 0.0 . 69 . 0.402062 0 none . . PASS Atlas-INDEL TRIP12 9320 hgsc.bcm.edu hg19 2 230701700 230701702 + Frame_Shift_Del DEL ACT ACT - novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 ACT ACT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 TRIP12,colon,carcinoma,0,1 TRIP12 NM_004238 exon5 c.1008_1009del p.336_337del . . 47.0 23.0 54.0 0.0 . 207 . 0.489362 0 none . . PASS Atlas-INDEL AUTS2 26053 hgsc.bcm.edu hg19 7 70255838 70255838 + Frame_Shift_Del DEL T T - novel TCGA-BQ-7048-01A-11D-1961-08 TCGA-BQ-7048-11A-01D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2ee5ae28-9eb8-4f46-b9d9-13c5246297eb 71fbff51-4f0d-4d4f-8083-f64c0ac772b8 . AUTS2 NM_015570 exon19 c.3635delC p.P1212fs . . 45.0 13.0 45.0 0.0 . 173 . 0.288889 0 none . . PASS Atlas-INDEL