Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
MKI67IP	84365	hgsc.bcm.edu	hg19	2	122488590	122488590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	MKI67IP	NM_032390	exon4	c.G443T	p.R148L	TTATACCGTTTCA	.	160.0	8.0	125.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
RFTN2	130132	hgsc.bcm.edu	hg19	2	198511301	198511301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	RFTN2	NM_144629	exon2	c.G229T	p.G77W	TAGCCCCGACAAT	.	197.0	9.0	166.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
SEPT2	4735	hgsc.bcm.edu	hg19	2	242277178	242277178	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	SEPT2	NM_001008491	exon8	c.G567C	p.L189L	CACCCTGAAGGAA	.	87.0	4.0	104.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC13	152206	hgsc.bcm.edu	hg19	3	42777251	42777251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	CCDC13	NM_144719	exon10	c.G1319T	p.R440L	GCCTCCCGCTCAG	.	163.0	10.0	169.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1407	57577	hgsc.bcm.edu	hg19	3	113737705	113737705	+	Missense_Mutation	SNP	C	C	A	rs149867008	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	KIAA1407	NM_020817	exon8	c.G983T	p.R328L	AAATACCGTTTTT	.	348.0	14.0	391.0	0.0	.	80	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
AFAP1	60312	hgsc.bcm.edu	hg19	4	7840357	7840357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	AFAP1	NM_001134647	exon6	c.C620A	p.P207Q	TCTTTCGGGATGT	.	174.0	9.0	166.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
SDHA	6389	hgsc.bcm.edu	hg19	5	224586	224586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	SDHA	NM_004168	exon3	c.G262A	p.A88T	AATACAGCATGTG	.	165.0	27.0	215.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
ADAMTS12	81792	hgsc.bcm.edu	hg19	5	33596055	33596055	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	ADAMTS12	NM_030955	exon17	c.A2638C	p.K880Q	AAGCCTTTTCATG	.	168.0	30.0	181.0	0.0	.	464	.	.	.	none	.	.	PASS	Atlas-SNP
DBN1	1627	hgsc.bcm.edu	hg19	5	176895199	176895199	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	DBN1	NM_080881	exon4	c.G171T	p.S57S	GTGTCCCGAAAGC	.	227.0	11.0	306.0	0.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
HIST1H2BC	8347	hgsc.bcm.edu	hg19	6	26123936	26123936	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	HIST1H2BC	NM_003526	exon1	c.T197G	p.F66C	TTAACGAAAGAAT	.	226.0	15.0	279.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
SYNJ2	8871	hgsc.bcm.edu	hg19	6	158516906	158516906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	SYNJ2,NS,carcinoma,0,1	SYNJ2	NM_003898	exon27	c.C4001A	p.P1334Q	TACCCCCGAGGAG	.	74.0	7.0	102.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
ELN	2006	hgsc.bcm.edu	hg19	7	73474352	73474352	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	ELN	NM_001081754	exon23	c.C1566A	p.P522P	GGCTCCCGGCATT	.	182.0	9.0	227.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
ELAVL2	1993	hgsc.bcm.edu	hg19	9	23762205	23762205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	ELAVL2	NM_001171195	exon2	c.A28G	p.T10A	TGCAAGTTGGCCC	.	433.0	83.0	388.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF618	114991	hgsc.bcm.edu	hg19	9	116812343	116812343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	ZNF618_ENST00000374126,NS,carcinoma,0,3	ZNF618	NM_133374	exon14	c.G2482T	p.G828W	AGAAGCGGGTGTG	.	179.0	8.0	155.0	0.0	.	184	.	.	.	none	.	.	PASS	Atlas-SNP
PDCD11	22984	hgsc.bcm.edu	hg19	10	105202030	105202030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	PDCD11	NM_014976	exon32	c.C4768A	p.R1590S	CTGTCCCGCATTG	.	187.0	11.0	180.0	0.0	.	160	.	.	.	none	.	.	PASS	Atlas-SNP
NLRX1	79671	hgsc.bcm.edu	hg19	11	119051968	119051968	+	Splice_Site	SNP	T	T	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	NLRX1	NM_024618	exon8	c.2354+2T>A	.	CTGCGGTGAGTGA	.	59.0	16.0	55.0	0.0	.	128	.	.	.	none	.	.	PASS	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	hg19	12	101693787	101693787	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	UTP20	NM_014503	exon14	c.C1623A	p.T541T	CGTCACCGGCTTC	.	368.0	17.0	310.0	0.0	.	222	.	.	.	none	.	.	PASS	Atlas-SNP
TSC2	7249	hgsc.bcm.edu	hg19	16	2129191	2129191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	TSC2	NM_001114382	exon27	c.C3125A	p.P1042Q	CTGTCCCGAAGAG	.	101.0	7.0	149.0	0.0	.	364	.	.	.	none	.	.	PASS	Atlas-SNP
CDR2	1039	hgsc.bcm.edu	hg19	16	22360668	22360668	+	Silent	SNP	C	C	A	rs374733638	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	CDR2	NM_001802	exon4	c.G438T	p.P146P	CTTTCCCGGGCTC	.	211.0	10.0	230.0	0.0	.	34	.	.	.	alt	.	.	PASS	Atlas-SNP
ZNF404	342908	hgsc.bcm.edu	hg19	19	44378055	44378055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	ZNF404	NM_001033719	exon2	c.T302C	p.V101A	CATCCCACTTTAG	.	343.0	16.0	264.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
EMC10	284361	hgsc.bcm.edu	hg19	19	50981244	50981244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	.	NM_175063	exon2	c.A173G	p.H58R	TGGAGCACTCATT	.	101.0	22.0	132.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF761	388561	hgsc.bcm.edu	hg19	19	53959648	53959648	+	Silent	SNP	C	C	A	rs373072898	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	ZNF761,NS,carcinoma,0,1	ZNF761	NM_001008401	exon7	c.C1887A	p.T629T	TCATACCGGAGAG	.	163.0	7.0	160.0	0.0	.	104	.	.	.	alt	.	.	PASS	Atlas-SNP
TM9SF4	9777	hgsc.bcm.edu	hg19	20	30723909	30723909	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	TM9SF4	NM_014742	exon3	c.A162G	p.L54L	CCAGCTACCTTAT	.	109.0	5.0	84.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
IFT52	51098	hgsc.bcm.edu	hg19	20	42265804	42265804	+	Missense_Mutation	SNP	G	G	T	rs145627647	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	IFT52	NM_016004	exon12	c.G1031T	p.R344L	GTTTCCGGGAGTT	.	191.0	9.0	138.0	0.0	.	40	.	.	.	alt	G|0.999;A|0.001	.	PASS	Atlas-SNP
MYH9	4627	hgsc.bcm.edu	hg19	22	36714304	36714304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	.	MYH9	NM_002473	exon11	c.C1175A	p.P392Q	ATGCGCGGGGTGA	.	284.0	12.0	322.0	0.0	.	225	.	.	.	none	.	.	PASS	Atlas-SNP