Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ASH1L	55870	hgsc.bcm.edu	hg19	1	155317614	155317614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	ASH1L	NM_018489	exon20	c.T7636C	p.S2546P	GGGCTGATGCCTC	.	137.0	59.0	146.0	0.0	.	279	.	.	.	none	.	.	PASS	Atlas-SNP
NEK7	140609	hgsc.bcm.edu	hg19	1	198231718	198231718	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	NEK7	NM_133494	exon4	c.T212G	p.M71R	ATTTAATGGATGC	.	173.0	28.0	208.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC3B	116135	hgsc.bcm.edu	hg19	3	26751861	26751861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	LRRC3B	NM_052953	exon2	c.G698T	p.R233L	ATGCCCGGAGACA	.	42.0	4.0	35.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJC13	23317	hgsc.bcm.edu	hg19	3	132184844	132184844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	DNAJC13	NM_015268	exon18	c.T1898C	p.L633P	GACAGCTAAGTAG	.	42.0	12.0	38.0	0.0	.	253	.	.	.	none	.	.	PASS	Atlas-SNP
XRN1	54464	hgsc.bcm.edu	hg19	3	142141468	142141468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	XRN1	NM_001042604	exon8	c.C923G	p.P308R	AGAAGAGGCAGTG	.	118.0	10.0	99.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
TCERG1	10915	hgsc.bcm.edu	hg19	5	145836845	145836845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	TCERG1	NM_006706	exon3	c.G385A	p.A129T	ACTCCAGCACTAC	.	120.0	41.0	145.0	0.0	.	148	.	.	.	none	.	.	PASS	Atlas-SNP
DSP	1832	hgsc.bcm.edu	hg19	6	7579570	7579570	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	DSP,colon,NS,0,1	DSP	NM_004415	exon23	c.G3147T	p.S1049S	CAACTCGGAAAAC	.	65.0	3.0	58.0	1.0	.	306	.	.	.	none	.	.	PASS	Atlas-SNP
EPHB6	2051	hgsc.bcm.edu	hg19	7	142568111	142568111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	EPHB6	NM_004445	exon18	c.A2752G	p.M918V	GACAAGATGATCC	.	190.0	19.0	190.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
ASB10	136371	hgsc.bcm.edu	hg19	7	150878332	150878332	+	Silent	SNP	G	G	T	rs61743170	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	ASB10	NM_001142459	exon3	c.C798A	p.A266A	GGCCTCGGCATCG	.	63.0	6.0	66.0	0.0	.	99	.	.	.	alt	G|0.914;A|0.086	.	PASS	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	hg19	8	144940482	144940482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	EPPK1	NM_031308	exon1	c.T6940C	p.Y2314H	CGGTGTAGGGGTC	.	336.0	27.0	352.0	0.0	.	199	.	.	.	none	.	.	PASS	Atlas-SNP
NTRK2	4915	hgsc.bcm.edu	hg19	9	87342656	87342656	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	NTRK2	NM_001018065	exon9	c.C941G	p.A314G	AACCAGCGCTTCA	.	87.0	33.0	94.0	0.0	.	331	.	.	.	none	.	.	PASS	Atlas-SNP
CYLC2	1539	hgsc.bcm.edu	hg19	9	105767702	105767702	+	Missense_Mutation	SNP	T	T	A	rs2298052	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	CYLC2,NS,carcinoma,0,1	CYLC2	NM_001340	exon5	c.T789A	p.D263E	GAAAGATGCAAAG	.	70.0	14.0	71.0	0.0	.	109	.	.	.	alt	T|0.972;C|0.028	.	PASS	Atlas-SNP
DDB1	1642	hgsc.bcm.edu	hg19	11	61077796	61077796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	DDB1	NM_001923	exon19	c.T2372C	p.L791P	ATAAGTAGGTTGT	.	95.0	4.0	103.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
PCF11	51585	hgsc.bcm.edu	hg19	11	82875304	82875304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	PCF11	NM_015885	exon4	c.C563T	p.P188L	CCACTCCTCCAAT	.	53.0	14.0	57.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
RIMKLB	57494	hgsc.bcm.edu	hg19	12	8906675	8906675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	RIMKLB	NM_020734	exon6	c.G683T	p.S228I	TGCAAAGCAACTG	.	139.0	7.0	158.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
PAN2	9924	hgsc.bcm.edu	hg19	12	56720460	56720460	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	PAN2	NM_014871	exon7	c.A1203G	p.P401P	GGTGAGTGGGACA	.	47.0	22.0	51.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
ZFC3H1	196441	hgsc.bcm.edu	hg19	12	72017888	72017888	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	ZFC3H1	NM_144982	exon23	c.T4502A	p.L1501X	ACCTGTAAAATTG	.	218.0	40.0	243.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
THBS1	7057	hgsc.bcm.edu	hg19	15	39882095	39882095	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	THBS1	NM_003246	exon13	c.C2016G	p.P672P	CGACCCCATGTAC	.	48.0	9.0	48.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF532	55205	hgsc.bcm.edu	hg19	18	56586514	56586514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	ZNF532	NM_018181	exon4	c.C995T	p.P332L	AGCAACCGGATAG	.	152.0	61.0	139.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
LMNB2	84823	hgsc.bcm.edu	hg19	19	2435072	2435072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	LMNB2	NM_032737	exon5	c.A782G	p.E261G	AGCTCCTCCAGCG	.	90.0	4.0	101.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
ZFP36	7538	hgsc.bcm.edu	hg19	19	39898403	39898403	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	ZFP36	NM_003407	exon2	c.T63C	p.P21P	GAGCCCTGACGTG	.	295.0	105.0	331.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
ATP1B1	481	hgsc.bcm.edu	hg19	1	169076130	169076130	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	ATP1B1	NM_001677	exon1	c.62delA	p.K21fs	.	.	42.0	10.0	44.0	0.0	.	29	.	0.238095	0	none	.	.	PASS	Atlas-INDEL
ZNF440	126070	hgsc.bcm.edu	hg19	19	11943483	11943485	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	GTT	GTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	ZNF440	NM_152357	exon4	c.1491_1493del	p.497_498del	.	.	45.0	18.0	81.0	0.0	.	56	.	0.4	0	none	.	.	PASS	Atlas-INDEL