Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm PLCH2 9651 hgsc.bcm.edu hg19 1 2436173 2436173 + Missense_Mutation SNP G G A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . PLCH2 NM_014638 exon22 c.G3772A p.G1258S AGCCTGGGCGACC . 48.0 19.0 46.0 0.0 . 131 . . . none . . PASS Atlas-SNP HSPG2 3339 hgsc.bcm.edu hg19 1 22214014 22214014 + Missense_Mutation SNP C C A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . HSPG2 NM_005529 exon8 c.G857T p.G286V TGGGGCCCACAGG . 80.0 37.0 70.0 0.0 . 311 . . . none . . PASS Atlas-SNP HIVEP3 59269 hgsc.bcm.edu hg19 1 42048585 42048585 + Silent SNP A A T novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . HIVEP3 NM_024503 exon4 c.T1884A p.L628L TTTGGTAAGCTCG . 152.0 61.0 183.0 0.0 . 235 . . . none . . PASS Atlas-SNP CYP4A11 1579 hgsc.bcm.edu hg19 1 47402352 47402352 + Missense_Mutation SNP G G C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 CYP4A11,NS,carcinoma,0,1 CYP4A11 NM_000778 exon4 c.C494G p.S165C CGTACAGAGTCTG . 62.0 23.0 79.0 0.0 . 77 . . . none . . PASS Atlas-SNP ZCCHC11 23318 hgsc.bcm.edu hg19 1 52902541 52902541 + Silent SNP G G T novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . ZCCHC11 NM_001009881 exon26 c.C4048A p.R1350R AGTCTCGAGTATC . 160.0 72.0 178.0 0.0 . 151 . . . none . . PASS Atlas-SNP CEP350 9857 hgsc.bcm.edu hg19 1 180000535 180000535 + Missense_Mutation SNP A A C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . CEP350 NM_014810 exon15 c.A3631C p.K1211Q GGAAAGAAATCTG . 38.0 16.0 36.0 0.0 . 418 . . . none . . PASS Atlas-SNP PTPN14 5784 hgsc.bcm.edu hg19 1 214556993 214556993 + Silent SNP G G A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . PTPN14 NM_005401 exon13 c.C2205T p.A735A CAGCTGGGCACTG . 67.0 30.0 78.0 0.0 . 168 . . . none . . PASS Atlas-SNP SULT1C4 27233 hgsc.bcm.edu hg19 2 109002781 109002781 + Missense_Mutation SNP T T C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . SULT1C4 NM_006588 exon6 c.T749C p.I250T CATCGATTCCTGC . 119.0 59.0 111.0 0.0 . 41 . . . none . . PASS Atlas-SNP NFE2L2 4780 hgsc.bcm.edu hg19 2 178098803 178098803 + Missense_Mutation SNP C C A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 NFE2L2,NS,carcinoma,-1,11 NFE2L2 NM_006164 exon2 c.G242T p.G81V AATTCACCTGTCT . 98.0 51.0 68.0 0.0 . 225 . . . none . . PASS Atlas-SNP SLC22A13 9390 hgsc.bcm.edu hg19 3 38317429 38317429 + Missense_Mutation SNP T T C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . SLC22A13 NM_004256 exon7 c.T1079C p.L360P TCGGCCTGGACGT . 77.0 29.0 77.0 0.0 . 42 . . . none . . PASS Atlas-SNP SACM1L 22908 hgsc.bcm.edu hg19 3 45773632 45773632 + Missense_Mutation SNP A A T novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . SACM1L NM_014016 exon13 c.A1089T p.Q363H AATGCAAGATGAA . 146.0 69.0 151.0 0.0 . 38 . . . none . . PASS Atlas-SNP SLC38A3 10991 hgsc.bcm.edu hg19 3 50252997 50252997 + Missense_Mutation SNP T T C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . SLC38A3 NM_006841 exon6 c.T395C p.L132P AGCAGCTGGGCTA . 65.0 29.0 85.0 0.0 . 22 . . . none . . PASS Atlas-SNP PPM1M 132160 hgsc.bcm.edu hg19 3 52282683 52282683 + Silent SNP C C T novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . PPM1M NM_144641 exon7 c.C945T p.L315L GGATCTCAAGTAC . 150.0 70.0 140.0 0.0 . 9 . . . none . . PASS Atlas-SNP SLMAP 7871 hgsc.bcm.edu hg19 3 57827089 57827089 + Missense_Mutation SNP T T C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . SLMAP NM_007159 exon3 c.T410C p.L137P CCCGGCTCCGCTC . 81.0 39.0 73.0 0.0 . 46 . . . none . . PASS Atlas-SNP KIAA1524 57650 hgsc.bcm.edu hg19 3 108282018 108282018 + Missense_Mutation SNP C C A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 KIAA1524,colon,carcinoma,+1,1 KIAA1524 NM_020890 exon13 c.G1589T p.R530I AATATTCTCAGTC . 204.0 74.0 252.0 0.0 . 82 . . . none . . PASS Atlas-SNP ZNF721 170960 hgsc.bcm.edu hg19 4 436019 436019 + Missense_Mutation SNP A A C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . ZNF721 NM_133474 exon3 c.C2237G p.T746R GTATGAATTTTCT . 33.0 12.0 29.0 0.0 . 205 . . . none . . PASS Atlas-SNP NSUN7 79730 hgsc.bcm.edu hg19 4 40778094 40778094 + Missense_Mutation SNP C C A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . NSUN7 NM_024677 exon7 c.C854A p.S285Y TCCATTCTGTAAA . 41.0 19.0 52.0 0.0 . 70 . . . none . . PASS Atlas-SNP POLR2B 5431 hgsc.bcm.edu hg19 4 57891054 57891054 + Silent SNP A A G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . POLR2B NM_000938 exon22 c.A2967G p.V989V AAAGGTATCGGCT . 86.0 38.0 91.0 0.0 . 108 . . . none . . PASS Atlas-SNP DHX29 54505 hgsc.bcm.edu hg19 5 54591351 54591351 + Silent SNP A A G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . DHX29 NM_019030 exon5 c.T507C p.D169D AAGTGCATCTTAA . 58.0 24.0 67.0 0.0 . 116 . . . none . . PASS Atlas-SNP CTNNA1 1495 hgsc.bcm.edu hg19 5 138268291 138268291 + Missense_Mutation SNP G G A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . CTNNA1 NM_001903 exon17 c.G2323A p.D775N AAGCAGGACCTGC . 34.0 19.0 43.0 0.0 . 114 . . . none . . PASS Atlas-SNP ANKHD1 54882 hgsc.bcm.edu hg19 5 139864824 139864824 + Silent SNP T T C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . ANKHD1 NM_017747 exon12 c.T1989C p.H663H TACTCATCGACTC . 46.0 18.0 49.0 0.0 . 233 . . . none . . PASS Atlas-SNP TMCO6 55374 hgsc.bcm.edu hg19 5 140021512 140021512 + Silent SNP G G A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . TMCO6 NM_018502 exon4 c.G372A p.L124L CCTGCTGCAGCTT . 89.0 37.0 88.0 0.0 . 30 . . . none . . PASS Atlas-SNP C6orf47 57827 hgsc.bcm.edu hg19 6 31627425 31627425 + Silent SNP A A G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . C6orf47 NM_021184 exon1 c.T300C p.T100T CTCTTGAGTGCTA . 86.0 35.0 83.0 0.0 . 15 . . . none . . PASS Atlas-SNP PHF1 5252 hgsc.bcm.edu hg19 6 33380325 33380325 + Missense_Mutation SNP A A T novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . PHF1 NM_024165 exon3 c.A200T p.D67V TTGAGGATGATTC . 114.0 45.0 146.0 0.0 . 42 . . . none . . PASS Atlas-SNP GUCA1B 2979 hgsc.bcm.edu hg19 6 42152609 42152609 + Missense_Mutation SNP C C A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . GUCA1B NM_002098 exon4 c.G547T p.D183Y TCATGTCCATCTG . 89.0 46.0 112.0 0.0 . 19 . . . none . . PASS Atlas-SNP SYNJ2 8871 hgsc.bcm.edu hg19 6 158450005 158450005 + Silent SNP C C T rs372960799 TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . SYNJ2 NM_003898 exon3 c.C432T p.V144V GACTGTCCGCACG . 89.0 34.0 76.0 0.0 . 111 . . . weak . . PASS Atlas-SNP ARMC10 83787 hgsc.bcm.edu hg19 7 102724230 102724230 + Missense_Mutation SNP A A G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . ARMC10 NM_031905 exon3 c.A346G p.R116G ATTGAAAGAGCTT . 98.0 32.0 76.0 0.0 . 25 . . . none . . PASS Atlas-SNP RP1 6101 hgsc.bcm.edu hg19 8 55534829 55534829 + Silent SNP A A G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . RP1 NM_006269 exon3 c.A768G p.A256A AAATGCAAAGTCA . 51.0 18.0 51.0 0.0 . 429 . . . none . . PASS Atlas-SNP SLC45A4 57210 hgsc.bcm.edu hg19 8 142238284 142238284 + Nonsense_Mutation SNP G G A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . SLC45A4 NM_001080431 exon1 c.C82T p.Q28X CTTTCTGAAGACT . 187.0 83.0 217.0 0.0 . 71 . . . none . . PASS Atlas-SNP PITRM1 10531 hgsc.bcm.edu hg19 10 3206029 3206029 + Missense_Mutation SNP G G A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . PITRM1 NM_014889 exon7 c.C679T p.P227S GGTCAGGAAGAAG . 63.0 28.0 79.0 0.0 . 109 . . . none . . PASS Atlas-SNP NCOA4 8031 hgsc.bcm.edu hg19 10 51586276 51586276 + Silent SNP A A T novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . NCOA4 NM_001145261 exon10 c.A1752T p.V584V GGAAGTATTACTT . 127.0 48.0 137.0 0.0 . 58 . . . none . . PASS Atlas-SNP PTEN 5728 hgsc.bcm.edu hg19 10 89717669 89717669 + Missense_Mutation SNP A A G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 .,1 PTEN NM_000314 exon7 c.A694G p.T232A GGACCCACACGAC . 91.0 30.0 116.0 1.0 . 3652 . . . none . . PASS Atlas-SNP DRD4 1815 hgsc.bcm.edu hg19 11 639919 639919 + Missense_Mutation SNP G G A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . DRD4 NM_000797 exon3 c.G670A p.V224M TGGGAGGTGGCAC . 33.0 15.0 39.0 0.0 . 17 . . . none . . PASS Atlas-SNP OR4A16 81327 hgsc.bcm.edu hg19 11 55110978 55110978 + Missense_Mutation SNP T T C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . OR4A16 NM_001005274 exon1 c.T302C p.I101T TCTTCATAGAACA . 268.0 22.0 317.0 0.0 . 120 . . . none . . PASS Atlas-SNP UBE4A 9354 hgsc.bcm.edu hg19 11 118250228 118250228 + Nonsense_Mutation SNP C C T novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . UBE4A NM_004788 exon11 c.C1660T p.Q554X GATGCTCAGCAAA . 97.0 51.0 144.0 0.0 . 97 . . . none . . PASS Atlas-SNP NLRX1 79671 hgsc.bcm.edu hg19 11 119044337 119044337 + Missense_Mutation SNP C C T novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . NLRX1 NM_024618 exon5 c.C379T p.P127S CGCCCACCCGCGG . 46.0 18.0 71.0 0.0 . 128 . . . none . . PASS Atlas-SNP TRIM29 23650 hgsc.bcm.edu hg19 11 119988941 119988941 + Silent SNP G G A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . TRIM29 NM_012101 exon7 c.C1617T p.F539F CAGGGAGAAGGAG . 33.0 12.0 37.0 0.0 . 78 . . . none . . PASS Atlas-SNP FKBP4 2288 hgsc.bcm.edu hg19 12 2909052 2909052 + Silent SNP A A G rs201311104 TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . FKBP4 NM_002014 exon6 c.A708G p.Q236Q GTTCCAAATCCCA . 33.0 19.0 39.0 0.0 . 29 . . . weak A|0.999;G|0.001 0.001 PASS Atlas-SNP DPPA3 359787 hgsc.bcm.edu hg19 12 7867786 7867786 + Silent SNP T T A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . DPPA3 NM_199286 exon2 c.T90A p.S30S GGCCTCTCAAATC . 223.0 102.0 235.0 0.0 . 26 . . . none . . PASS Atlas-SNP CNTN1 1272 hgsc.bcm.edu hg19 12 41323760 41323760 + Missense_Mutation SNP A A G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . CNTN1 NM_001256063 exon7 c.A659G p.K220R TTACAAAGAGCGT . 210.0 85.0 219.0 0.0 . 207 . . . none . . PASS Atlas-SNP CCNT1 904 hgsc.bcm.edu hg19 12 49087909 49087909 + Missense_Mutation SNP G G T novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . CCNT1 NM_001240 exon9 c.C1088A p.S363Y GGTAAGGAATGAT . 176.0 78.0 154.0 0.0 . 55 . . . none . . PASS Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39450406 39450406 + Missense_Mutation SNP T T G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . FREM2 NM_207361 exon20 c.T8431G p.Y2811D GGGACCTATACTG . 82.0 42.0 97.0 0.0 . 385 . . . none . . PASS Atlas-SNP TEP1 7011 hgsc.bcm.edu hg19 14 20845481 20845481 + Silent SNP G G A rs375172392 alternate_allele TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . TEP1 NM_007110 exon41 c.C6046T p.L2016L GTCCTAGCACAGG . 49.0 22.0 41.0 0.0 . 224 . . . alt . . PASS Atlas-SNP PNP 4860 hgsc.bcm.edu hg19 14 20944608 20944608 + Missense_Mutation SNP C C T novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . PNP NM_000270 exon6 c.C718T p.L240F TTCTCACTCATCA . 93.0 43.0 94.0 0.0 . 21 . . . none . . PASS Atlas-SNP RNF31 55072 hgsc.bcm.edu hg19 14 24626550 24626550 + Missense_Mutation SNP C C T novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . RNF31 NM_017999 exon15 c.C2545T p.R849C TGGAAACGCATGA . 28.0 16.0 37.0 0.0 . 95 . . . none . . PASS Atlas-SNP KIAA0391 9692 hgsc.bcm.edu hg19 14 35592664 35592664 + Missense_Mutation SNP T T G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . KIAA0391 NM_014672 exon2 c.T213G p.D71E GAAAGATGAGGGC . 52.0 25.0 61.0 0.0 . 35 . . . none . . PASS Atlas-SNP VTI1B 10490 hgsc.bcm.edu hg19 14 68118141 68118141 + Silent SNP C C T novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . VTI1B NM_006370 exon6 c.G660A p.L220L GCCTCCCAGGATG . 89.0 48.0 98.0 0.0 . 15 . . . none . . PASS Atlas-SNP SIN3A 25942 hgsc.bcm.edu hg19 15 75664533 75664533 + Silent SNP G G A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . SIN3A NM_001145358 exon21 c.C3609T p.S1203S ACGCTTGCTTACA . 135.0 47.0 151.0 0.0 . 152 . . . none . . PASS Atlas-SNP TICRR 90381 hgsc.bcm.edu hg19 15 90138745 90138745 + Silent SNP T T C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . . NM_152259 exon7 c.T1803C p.D601D TCCGGATGTGGCT . 88.0 40.0 119.0 0.0 . . . . . none . . PASS Atlas-SNP SPAG5 10615 hgsc.bcm.edu hg19 17 26911390 26911390 + Missense_Mutation SNP A A G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . SPAG5 NM_006461 exon12 c.T2270C p.L757P TGGCAGAGTAACT . 368.0 253.0 291.0 0.0 . 92 . . . none . . PASS Atlas-SNP KRT27 342574 hgsc.bcm.edu hg19 17 38938378 38938378 + Missense_Mutation SNP A A G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . KRT27 NM_181537 exon1 c.T368C p.F123S GGTCCAAATTTCT . 190.0 10.0 129.0 0.0 . 41 . . . none . . PASS Atlas-SNP HEXDC 284004 hgsc.bcm.edu hg19 17 80382347 80382347 + Silent SNP T T C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . HEXDC NM_173620 exon3 c.T162C p.P54P GGGCCCTCTGAGG . 139.0 38.0 115.0 0.0 . 43 . . . none . . PASS Atlas-SNP TIMM21 29090 hgsc.bcm.edu hg19 18 71816322 71816322 + Silent SNP C C G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . . NM_014177 exon1 c.C279G p.T93T GGGAACCGCCGTC . 67.0 32.0 72.0 0.0 . . . . . none . . PASS Atlas-SNP STXBP2 6813 hgsc.bcm.edu hg19 19 7712265 7712265 + Missense_Mutation SNP A A T novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . STXBP2 NM_001272034 exon18 c.A1597T p.N533Y CACAAGAACAAGG . 52.0 21.0 57.0 0.0 . 63 . . . none . . PASS Atlas-SNP DOCK6 57572 hgsc.bcm.edu hg19 19 11312640 11312640 + Missense_Mutation SNP C C A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . DOCK6 NM_020812 exon44 c.G5613T p.K1871N CTTACGCTTGTGT . 20.0 11.0 16.0 0.0 . 104 . . . none . . PASS Atlas-SNP DOCK6 57572 hgsc.bcm.edu hg19 19 11312680 11312680 + Missense_Mutation SNP G G C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . DOCK6 NM_020812 exon44 c.C5573G p.P1858R CCATCCGGCGTGA . 35.0 10.0 42.0 0.0 . 104 . . . none . . PASS Atlas-SNP OR7A17 26333 hgsc.bcm.edu hg19 19 14991895 14991895 + Silent SNP G G A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . OR7A17 NM_030901 exon1 c.C273T p.V91V GGTGATGACTCTG . 126.0 59.0 95.0 0.0 . 37 . . . none . . PASS Atlas-SNP USHBP1 83878 hgsc.bcm.edu hg19 19 17362478 17362478 + Missense_Mutation SNP C C G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . USHBP1 NM_031941 exon12 c.G1835C p.R612P TCCCTGCGCAGAG . 104.0 48.0 96.0 0.0 . 85 . . . none . . PASS Atlas-SNP CRTC1 23373 hgsc.bcm.edu hg19 19 18876245 18876245 + Missense_Mutation SNP C C G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . CRTC1 NM_001098482 exon10 c.C966G p.H322Q ACAGCACCGCCCA . 180.0 66.0 199.0 0.0 . 88 . . . none . . PASS Atlas-SNP ZNF253 56242 hgsc.bcm.edu hg19 19 20003291 20003291 + Missense_Mutation SNP C C T novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . ZNF253 NM_021047 exon4 c.C1235T p.S412F TCCTCTCCAAACA . 38.0 19.0 37.0 0.0 . 99 . . . none . . PASS Atlas-SNP ZNF471 57573 hgsc.bcm.edu hg19 19 57037192 57037192 + Missense_Mutation SNP T T C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . ZNF471 NM_020813 exon5 c.T1756C p.C586R TCATCCTGTGCTC . 76.0 33.0 62.0 0.0 . 99 . . . none . . PASS Atlas-SNP PTPRT 11122 hgsc.bcm.edu hg19 20 41100970 41100970 + Silent SNP G G A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . PTPRT NM_007050 exon8 c.C1386T p.L462L CAGCAAGAGTCGC . 147.0 51.0 103.0 0.0 . 372 . . . none . . PASS Atlas-SNP ZGPAT 84619 hgsc.bcm.edu hg19 20 62366823 62366823 + Missense_Mutation SNP T T C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . ZGPAT NM_032527 exon6 c.T1364C p.L455P GGGCCCTGAGCCT . 51.0 30.0 32.0 0.0 . 57 . . . none . . PASS Atlas-SNP SFI1 9814 hgsc.bcm.edu hg19 22 32002357 32002357 + Missense_Mutation SNP G G C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . SFI1 NM_001007467 exon21 c.G2098C p.D700H CGAGTGGATGAAG . 63.0 25.0 61.0 0.0 . 78 . . . none . . PASS Atlas-SNP C1QTNF6 114904 hgsc.bcm.edu hg19 22 37578251 37578251 + Missense_Mutation SNP G G C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . C1QTNF6 NM_182486 exon3 c.C814G p.L272V TGATGAGGTGGCC . 35.0 18.0 48.0 0.0 . 32 . . . none . . PASS Atlas-SNP ARFGAP3 26286 hgsc.bcm.edu hg19 22 43213794 43213794 + Silent SNP A A G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . ARFGAP3 NM_014570 exon10 c.T882C p.I294I GCCACTAATGTTC . 139.0 63.0 174.0 0.0 . 48 . . . none . . PASS Atlas-SNP SYN1 6853 hgsc.bcm.edu hg19 X 47432308 47432308 + Silent SNP G G C novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . SYN1 NM_006950 exon13 c.C2073G p.T691T GCGGATGGTCTCA . 58.0 56.0 74.0 0.0 . 84 . . . none . . PASS Atlas-SNP HEPH 9843 hgsc.bcm.edu hg19 X 65390505 65390505 + Silent SNP C C T novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . HEPH NM_138737 exon2 c.C255T p.G85G CCTGGGCATCCGG . 23.0 19.0 25.0 0.0 . 224 . . . none . . PASS Atlas-SNP ARHGAP36 158763 hgsc.bcm.edu hg19 X 130215818 130215818 + Missense_Mutation SNP G G A novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . ARHGAP36 NM_144967 exon2 c.G179A p.R60H TGGAGCGTCTGAA . 96.0 87.0 127.0 0.0 . 171 . . . none . . PASS Atlas-SNP MFN2 9927 hgsc.bcm.edu hg19 1 12061548 12061549 + Frame_Shift_Del DEL TT TT - novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 TT TT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . MFN2 NM_014874 exon9 c.906_907del p.302_303del . . 47.0 26.0 48.0 0.0 . 83 . 0.553191 0 none . . PASS Atlas-INDEL MLL3 58508 hgsc.bcm.edu hg19 7 151880116 151880116 + Frame_Shift_Del DEL A A - novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . MLL3 NM_170606 exon35 c.5209delA p.K1737fs . . 463.0 289.0 340.0 0.0 . 1564 . 0.62419 0 none . . PASS Atlas-INDEL ADAMTS9 56999 hgsc.bcm.edu hg19 3 64536694 64536703 + Frame_Shift_Del DEL CACCACCTTG CACCACCTTG - novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 CACCACCTTG CACCACCTTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . ADAMTS9 NM_182920 exon31 c.4735_4744del p.1579_1582del . . 135.0 26.0 237.0 0.0 . 206 . 0.192593 0 none . . PASS Atlas-INDEL SLC46A1 113235 hgsc.bcm.edu hg19 17 26731859 26731859 + Frame_Shift_Del DEL C C - novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . SLC46A1 NM_001242366 exon2 c.857delA p.D286fs . . 112.0 70.0 88.0 0.0 . 17 . 0.625 0 none . . PASS Atlas-INDEL MLL2 8085 hgsc.bcm.edu hg19 12 49435198 49435199 + Frame_Shift_Ins INS - - G novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 .,2 MLL2 NM_003482 exon31 c.6355_6356insC p.A2119fs . . 38.0 19.0 42.0 0.0 . 1173 . 0.5 0 none . . PASS Atlas-INDEL MATN2 4147 hgsc.bcm.edu hg19 8 98943606 98943609 + Frame_Shift_Del DEL CTAA CTAA - novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 CTAA CTAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . MATN2 NM_002380 exon3 c.567_570del p.189_190del . . 44.0 19.0 53.0 0.0 . 165 . 0.431818 0 none . . PASS Atlas-INDEL ADAMTS20 80070 hgsc.bcm.edu hg19 12 43823478 43823478 + Frame_Shift_Del DEL A A - novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . ADAMTS20 NM_025003 exon24 c.3432delA p.L1144fs . . 27.0 12.0 19.0 0.0 . 635 . 0.444444 0 none . . PASS Atlas-INDEL KBTBD6 89890 hgsc.bcm.edu hg19 13 41705610 41705612 + In_Frame_Del DEL CAC CAC - novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 CAC CAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . KBTBD6 NM_152903 exon1 c.1037_1039del p.346_347del . . 94.0 29.0 152.0 0.0 . 83 . 0.308511 0 none . . PASS Atlas-INDEL COX5A 9377 hgsc.bcm.edu hg19 15 75221461 75221461 + Frame_Shift_Del DEL A A - novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . COX5A NM_004255 exon2 c.214delA p.K72fs . . 108.0 34.0 174.0 0.0 . 9 . 0.314815 0 none . . PASS Atlas-INDEL PAK1 5058 hgsc.bcm.edu hg19 11 77047284 77047284 + Frame_Shift_Del DEL T T - novel TCGA-BQ-7051-01A-12D-1961-08 TCGA-BQ-7051-11A-02D-1961-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b d10a271b-6cf9-4623-a59e-f8cb7afcaca5 . PAK1 NM_001128620 exon13 c.1261delC p.R421fs . . 104.0 43.0 121.0 0.0 . 89 . 0.413462 0 none . . PASS Atlas-INDEL