Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
UBIAD1	29914	hgsc.bcm.edu	hg19	1	11346095	11346095	+	Silent	SNP	G	G	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	UBIAD1	NM_013319	exon2	c.G924C	p.L308L	CAAACTGCCCCAG	.	152.0	62.0	157.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
PADI3	51702	hgsc.bcm.edu	hg19	1	17609568	17609568	+	Silent	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	PADI3	NM_016233	exon16	c.G1989A	p.V663V	CATGGTGCCCTGA	.	62.0	13.0	53.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
ZDHHC18	84243	hgsc.bcm.edu	hg19	1	27176925	27176925	+	Silent	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ZDHHC18	NM_032283	exon4	c.G780A	p.T260T	CCTGACGTTGCGT	.	185.0	76.0	201.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1522	57648	hgsc.bcm.edu	hg19	1	33237745	33237745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	KIAA1522	NM_020888	exon6	c.C2965A	p.P989T	GTGTCCCCTGAGA	.	40.0	13.0	31.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	hg19	1	39835802	39835802	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	MACF1	NM_012090	exon47	c.C6853G	p.P2285A	ATTCCACCTACGG	.	35.0	18.0	48.0	0.0	.	909	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM81	388730	hgsc.bcm.edu	hg19	1	205052751	205052751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	TMEM81	NM_203376	exon1	c.C698A	p.A233D	CCAATGGCAATTC	.	113.0	37.0	123.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
CR2	1380	hgsc.bcm.edu	hg19	1	207642031	207642031	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CR2	NM_001006658	exon3	c.A605C	p.K202T	CGGGAAAATGGAG	.	195.0	85.0	288.0	0.0	.	164	.	.	.	none	.	.	PASS	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220338577	220338577	+	Silent	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SPEG	NM_005876	exon18	c.C4399A	p.R1467R	ACCGCCCGAAACC	.	157.0	86.0	156.0	0.0	.	272	.	.	.	none	.	.	PASS	Atlas-SNP
ATG7	10533	hgsc.bcm.edu	hg19	3	11356947	11356947	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ATG7	NM_001136031	exon7	c.T658A	p.F220I	GATTTCTTCCAAG	.	71.0	30.0	66.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
DHX30	22907	hgsc.bcm.edu	hg19	3	47882520	47882520	+	Silent	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	DHX30,NS,carcinoma,0,1	DHX30	NM_138615	exon7	c.C520A	p.R174R	AGTATTCGACCAG	.	46.0	4.0	39.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
ATP13A4	84239	hgsc.bcm.edu	hg19	3	193132518	193132518	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ATP13A4	NM_032279	exon26	c.C2864G	p.P955R	AGCTTAGGGTAGG	.	68.0	23.0	89.0	0.0	.	154	.	.	.	none	.	.	PASS	Atlas-SNP
PARM1	25849	hgsc.bcm.edu	hg19	4	75937687	75937687	+	Silent	SNP	G	G	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	PARM1_ENST00000307428,colon,carcinoma,0,3	PARM1	NM_015393	exon2	c.G96C	p.P32P	TCTTCCGACAAAC	.	67.0	32.0	81.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
ENPEP	2028	hgsc.bcm.edu	hg19	4	111397845	111397845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ENPEP	NM_001977	exon1	c.G275A	p.R92Q	ACTTTCGACTGCC	.	93.0	36.0	133.0	0.0	.	149	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	hg19	5	7820695	7820695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ADCY2	NM_020546	exon24	c.G3016A	p.V1006M	GGACCTGTGATAG	.	63.0	33.0	54.0	0.0	.	337	.	.	.	none	.	.	PASS	Atlas-SNP
RPS14	6208	hgsc.bcm.edu	hg19	5	149827271	149827271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	RPS14	NM_001025071	exon2	c.A26G	p.K9R	TCCTTCTTTTCCT	.	148.0	67.0	143.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
PRPF4B	8899	hgsc.bcm.edu	hg19	6	4047415	4047415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	PRPF4B	NM_003913	exon7	c.C1868G	p.S623C	GTTCATCTCAGAA	.	195.0	67.0	128.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
KCND2	3751	hgsc.bcm.edu	hg19	7	119915491	119915491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	KCND2	NM_012281	exon1	c.G805T	p.A269S	GTGGTGGCCATCC	.	102.0	28.0	82.0	0.0	.	194	.	.	.	none	.	.	PASS	Atlas-SNP
CDKN2B	1030	hgsc.bcm.edu	hg19	9	22006244	22006244	+	Silent	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CDKN2B	NM_004936	exon2	c.C159T	p.V53V	CATCATGACCTGC	.	22.0	8.0	49.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
NIPSNAP3B	55335	hgsc.bcm.edu	hg19	9	107531256	107531256	+	Silent	SNP	T	T	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	NIPSNAP3B	NM_018376	exon3	c.T384A	p.I128I	GGAAATTACTTAC	.	77.0	38.0	95.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	hg19	9	123888062	123888062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CNTRL	NM_007018	exon12	c.C1873A	p.L625M	GAATACCTGGGGA	.	124.0	5.0	146.0	0.0	.	161	.	.	.	none	.	.	PASS	Atlas-SNP
OR4A16	81327	hgsc.bcm.edu	hg19	11	55110797	55110797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	OR4A16,right_upper_lobe,carcinoma,0,1	OR4A16	NM_001005274	exon1	c.C121T	p.L41F	GGAAACCTCCTCA	.	180.0	64.0	202.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
ETS1	2113	hgsc.bcm.edu	hg19	11	128360461	128360461	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ETS1	NM_001143820	exon4	c.T225A	p.C75X	ATCTGCACATTCC	.	68.0	26.0	76.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A13	6540	hgsc.bcm.edu	hg19	12	335609	335609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SLC6A13	NM_016615	exon9	c.T1007C	p.L336P	AAGCCCAGGATGG	.	77.0	46.0	58.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
TAS2R20	259295	hgsc.bcm.edu	hg19	12	11150353	11150353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	TAS2R20	NM_176889	exon1	c.T122A	p.I41N	GAGGAGATCTTTT	.	100.0	63.0	75.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
TBC1D15	64786	hgsc.bcm.edu	hg19	12	72288466	72288466	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	TBC1D15	NM_022771	exon8	c.A709T	p.K237X	GCATAGAAAATTA	.	97.0	51.0	90.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
GALNT4	8693	hgsc.bcm.edu	hg19	12	89918277	89918277	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	GALNT4	NM_003774	exon1	c.T50G	p.F17C	GTTAAAAACGCCA	.	56.0	24.0	59.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
SLC7A1	6541	hgsc.bcm.edu	hg19	13	30091728	30091728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SLC7A1	NM_003045	exon10	c.A1492G	p.I498V	TTGAAATGTTCAC	.	323.0	93.0	293.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
TRIP4	9325	hgsc.bcm.edu	hg19	15	64702017	64702017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	TRIP4	NM_016213	exon7	c.T1033C	p.Y345H	GCAGAGTATCATA	.	75.0	25.0	83.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY9	115	hgsc.bcm.edu	hg19	16	4165346	4165346	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ADCY9	NM_001116	exon2	c.A98C	p.N33T	TTGGGGTTGATCT	.	29.0	12.0	23.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
SUPT6H	6830	hgsc.bcm.edu	hg19	17	27002076	27002076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SUPT6H	NM_003170	exon5	c.T434C	p.I145T	AAGCTATTGCGGA	.	82.0	25.0	49.0	0.0	.	165	.	.	.	none	.	.	PASS	Atlas-SNP
SF3A2	8175	hgsc.bcm.edu	hg19	19	2248401	2248401	+	Silent	SNP	G	G	A	rs375562170		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SF3A2	NM_007165	exon9	c.G1251A	p.S417S	TCCGTCGGCTCCT	.	9.0	4.0	1.0	0.0	.	22	.	.	.	weak	.	.	PASS	Atlas-SNP
NDUFB7	4713	hgsc.bcm.edu	hg19	19	14677078	14677078	+	Splice_Site	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	NDUFB7	NM_004146	exon4	c.282-1G>T	.	ACATAGCTGGGGG	.	78.0	35.0	97.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
SRSF6	6431	hgsc.bcm.edu	hg19	20	42087023	42087023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	SRSF6_ENST00000244020,NS,carcinoma,0,1	SRSF6	NM_006275	exon2	c.G130A	p.D44N	TTCGAGGACTCCC	.	17.0	9.0	14.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
SEC14L4	284904	hgsc.bcm.edu	hg19	22	30891293	30891293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SEC14L4	NM_001161368	exon5	c.G371A	p.R124H	TTGATGCGCTTCC	.	40.0	17.0	52.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
YWHAH	7533	hgsc.bcm.edu	hg19	22	32352660	32352660	+	Silent	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	YWHAH	NM_003405	exon2	c.C622T	p.L208L	GCTGAGCTGGACA	.	34.0	18.0	43.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
WNK3	65267	hgsc.bcm.edu	hg19	X	54319393	54319393	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	WNK3	NM_001002838	exon10	c.T1965A	p.H655Q	AAGGACATGTACA	.	28.0	21.0	46.0	0.0	.	218	.	.	.	none	.	.	PASS	Atlas-SNP
CMBL	134147	hgsc.bcm.edu	hg19	5	10288604	10288609	+	In_Frame_Del	DEL	AAGGCT	AAGGCT	-	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	AAGGCT	AAGGCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CMBL	NM_138809	exon3	c.249_254del	p.83_85del	.	.	101.0	32.0	131.0	0.0	.	24	.	0.316832	0	none	.	.	PASS	Atlas-INDEL
OR4K1	79544	hgsc.bcm.edu	hg19	14	20404312	20404313	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	OR4K1	NM_001004063	exon1	c.486_487del	p.162_163del	.	.	114.0	48.0	105.0	0.0	.	108	.	0.421053	0	none	.	.	PASS	Atlas-INDEL
ZNF681	148213	hgsc.bcm.edu	hg19	19	23927477	23927484	+	Frame_Shift_Del	DEL	TTAAAGGC	TTAAAGGC	-	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	TTAAAGGC	TTAAAGGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ZNF681	NM_138286	exon4	c.869_876del	p.290_292del	.	.	108.0	28.0	165.0	0.0	.	76	.	0.259259	0	none	.	.	PASS	Atlas-INDEL
CPEB4	80315	hgsc.bcm.edu	hg19	5	173317605	173317605	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CPEB4	NM_030627	exon1	c.868delA	p.S290fs	.	.	277.0	108.0	376.0	0.0	.	54	.	0.389892	0	none	.	.	PASS	Atlas-INDEL
C10orf95	79946	hgsc.bcm.edu	hg19	10	104211148	104211149	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	C10orf95	NM_024886	exon1	c.78_79insG	p.G26fs	.	.	42.0	18.0	55.0	0.0	.	5	.	0.428571	0	none	.	.	PASS	Atlas-INDEL
GAPDH	2597	hgsc.bcm.edu	hg19	12	6646478	6646485	+	Frame_Shift_Del	DEL	TGCCTCCT	TGCCTCCT	-	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	TGCCTCCT	TGCCTCCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	GAPDH	NM_002046	exon7	c.446_453del	p.149_151del	.	.	43.0	10.0	37.0	0.0	.	20	.	0.232558	0	none	.	.	PASS	Atlas-INDEL