Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm AHDC1 27245 hgsc.bcm.edu hg19 1 27875947 27875947 + Missense_Mutation SNP T T G novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . AHDC1 NM_001029882 exon6 c.A2680C p.K894Q TGGCCTTGGCTCC . 55.0 33.0 53.0 0.0 . 98 . . . none . . PASS Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152279672 152279672 + Nonsense_Mutation SNP C C A novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . FLG NM_002016 exon3 c.G7690T p.G2564X TGGATCCCCAGTT . 433.0 213.0 424.0 1.0 . 900 . . . none . . PASS Atlas-SNP MYOC 4653 hgsc.bcm.edu hg19 1 171605341 171605341 + Silent SNP G G C novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . MYOC NM_000261 exon3 c.C1239G p.L413L TTGTTCGAGTTCC . 155.0 63.0 214.0 0.0 . 69 . . . none . . PASS Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228473855 228473855 + Silent SNP G G C novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . OBSCN NM_001271223 exon39 c.G10368C p.R3456R TTGCCGGATCTCC . 19.0 12.0 28.0 0.0 . 2142 . . . none . . PASS Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32667276 32667276 + Missense_Mutation SNP A A C novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . BIRC6 NM_016252 exon18 c.A4088C p.H1363P GAGTTCATTCAAA . 69.0 37.0 74.0 0.0 . 838 . . . none . . PASS Atlas-SNP HNRPLL 92906 hgsc.bcm.edu hg19 2 38791355 38791355 + Missense_Mutation SNP T T A novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . HNRPLL NM_138394 exon13 c.A1598T p.K533M CAAAGCTTCAATG . 142.0 69.0 164.0 0.0 . 19 . . . none . . PASS Atlas-SNP SLC3A1 6519 hgsc.bcm.edu hg19 2 44508525 44508525 + Splice_Site SNP G G C novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . SLC3A1 NM_000341 exon3 c.611-1G>C . TCATTAGGTTTAA . 74.0 32.0 90.0 0.0 . 62 . . . none . . PASS Atlas-SNP FSHR 2492 hgsc.bcm.edu hg19 2 49190328 49190328 + Silent SNP G G A novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . FSHR NM_000145 exon10 c.C1632T p.V544V ACAGATGACCACA . 38.0 18.0 46.0 0.0 . 164 . . . none . . PASS Atlas-SNP MRPS5 64969 hgsc.bcm.edu hg19 2 95753148 95753148 + Missense_Mutation SNP C C G novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . MRPS5 NM_031902 exon12 c.G1247C p.G416A TTCATTCCCTGTG . 84.0 41.0 100.0 0.0 . 52 . . . none . . PASS Atlas-SNP IL1RL2 8808 hgsc.bcm.edu hg19 2 102836361 102836361 + Missense_Mutation SNP A A C novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . IL1RL2 NM_003854 exon8 c.A875C p.E292A TTCGGGAACATAA . 98.0 40.0 93.0 0.0 . 118 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179517427 179517427 + Missense_Mutation SNP T T G novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . TTN NM_001267550 exon201 c.A38996C p.K12999T GGCACTTTCTTTT . 210.0 95.0 240.0 0.0 . 18412 . . . none . . PASS Atlas-SNP WNT10A 80326 hgsc.bcm.edu hg19 2 219754716 219754716 + Missense_Mutation SNP G G C novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 WNT10A,NS,carcinoma,0,1 WNT10A NM_025216 exon3 c.G387C p.E129D CCGAGAGAGCGCT . 119.0 44.0 115.0 0.0 . 35 . . . none . . PASS Atlas-SNP NR1D2 9975 hgsc.bcm.edu hg19 3 24003534 24003534 + Missense_Mutation SNP T T G novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . NR1D2 NM_005126 exon5 c.T584G p.M195R GTGCAATGAAGAC . 60.0 26.0 70.0 0.0 . 52 . . . none . . PASS Atlas-SNP TGM4 7047 hgsc.bcm.edu hg19 3 44935102 44935102 + Missense_Mutation SNP G G A rs147559877 TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . TGM4 NM_003241 exon5 c.G464A p.R155H ACGAGCGCAAAGA . 82.0 36.0 90.0 0.0 . 82 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP LZTFL1 54585 hgsc.bcm.edu hg19 3 45874547 45874547 + Missense_Mutation SNP T T G novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . LZTFL1 NM_020347 exon5 c.A451C p.N151H CCTTGTTTAGGAG . 98.0 35.0 134.0 0.0 . 37 . . . none . . PASS Atlas-SNP USP4 7375 hgsc.bcm.edu hg19 3 49362339 49362339 + Silent SNP T T C novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . USP4 NM_199443 exon5 c.A621G p.L207L CTGGTATAGCCCA . 204.0 99.0 276.0 0.0 . 72 . . . none . . PASS Atlas-SNP CNTN3 5067 hgsc.bcm.edu hg19 3 74350871 74350871 + Missense_Mutation SNP G G T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . CNTN3 NM_020872 exon14 c.C1872A p.N624K GCTATGGTTGTCT . 103.0 48.0 125.0 0.0 . 174 . . . none . . PASS Atlas-SNP PIK3CB 5291 hgsc.bcm.edu hg19 3 138456588 138456588 + Silent SNP T T C novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . PIK3CB NM_006219 exon4 c.A762G p.V254V ATATTCTACTCTC . 108.0 56.0 118.0 0.0 . 103 . . . none . . PASS Atlas-SNP RNF168 165918 hgsc.bcm.edu hg19 3 196214405 196214405 + Silent SNP G G T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . RNF168 NM_152617 exon3 c.C423A p.A141A TTCACTGGCTTTG . 215.0 105.0 231.0 0.0 . 49 . . . none . . PASS Atlas-SNP TLR6 10333 hgsc.bcm.edu hg19 4 38830116 38830116 + Missense_Mutation SNP C C A rs3796508 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . TLR6 NM_006068 exon2 c.G979T p.V327L AAAACACGGTGTA . 72.0 33.0 80.0 0.0 . 67 . . . alt C|0.981;T|0.019 . PASS Atlas-SNP YTHDC1 91746 hgsc.bcm.edu hg19 4 69203291 69203291 + Missense_Mutation SNP T T G novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . YTHDC1 NM_001031732 exon3 c.A458C p.E153A ACTACCTCAGAAC . 75.0 38.0 78.0 0.0 . 81 . . . none . . PASS Atlas-SNP ENAM 10117 hgsc.bcm.edu hg19 4 71510231 71510231 + Missense_Mutation SNP C C T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . ENAM NM_031889 exon9 c.C3088T p.P1030S TCCAATCCAGAAG . 129.0 59.0 127.0 0.0 . 140 . . . none . . PASS Atlas-SNP ANXA3 306 hgsc.bcm.edu hg19 4 79512751 79512751 + Missense_Mutation SNP C C T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . ANXA3 NM_005139 exon7 c.C457T p.R153W GACTTCCGGAAAG . 287.0 114.0 271.0 0.0 . 35 . . . none . . PASS Atlas-SNP TRIO 7204 hgsc.bcm.edu hg19 5 14471560 14471560 + Missense_Mutation SNP C C T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . TRIO NM_007118 exon38 c.C5897T p.S1966F CCAGCTCTTTAAA . 124.0 89.0 106.0 0.0 . 305 . . . none . . PASS Atlas-SNP RICTOR 253260 hgsc.bcm.edu hg19 5 38954924 38954924 + Nonsense_Mutation SNP A A C novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . RICTOR NM_152756 exon27 c.T2649G p.Y883X TTGTCCATAAAGG . 255.0 148.0 132.0 0.0 . 182 . . . none . . PASS Atlas-SNP PIK3R1 5295 hgsc.bcm.edu hg19 5 67588178 67588178 + Silent SNP A A G novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . PIK3R1 NM_181523 exon8 c.A1008G p.G336G CTGGGGAGATATC . 225.0 74.0 177.0 0.0 . 869 . . . none . . PASS Atlas-SNP PIK3R1 5295 hgsc.bcm.edu hg19 5 67591286 67591286 + Missense_Mutation SNP A A T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . PIK3R1 NM_181523 exon14 c.A1784T p.N595I AGTTGAACGAGTG . 126.0 39.0 87.0 0.0 . 869 . . . none . . PASS Atlas-SNP ACSL6 23305 hgsc.bcm.edu hg19 5 131324510 131324510 + Missense_Mutation SNP T T A novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . ACSL6 NM_001009185 exon6 c.A640T p.I214F TGATGATGTAGCG . 304.0 104.0 220.0 0.0 . 169 . . . none . . PASS Atlas-SNP ATP10B 23120 hgsc.bcm.edu hg19 5 160113261 160113261 + Missense_Mutation SNP G G T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . ATP10B NM_025153 exon6 c.C295A p.L99M GGAACAGGAAATA . 57.0 12.0 38.0 0.0 . 201 . . . none . . PASS Atlas-SNP ATP10B 23120 hgsc.bcm.edu hg19 5 160113262 160113262 + Missense_Mutation SNP G G C novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . ATP10B NM_025153 exon6 c.C294G p.F98L GAACAGGAAATAG . 57.0 12.0 38.0 0.0 . 201 . . . none . . PASS Atlas-SNP BTNL8 79908 hgsc.bcm.edu hg19 5 180374575 180374575 + Missense_Mutation SNP G G A rs371555886 TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . BTNL8 NM_001159708 exon4 c.G737A p.G246D GCTGTGGCCTATT . 755.0 485.0 570.0 0.0 . 114 . . . weak . . PASS Atlas-SNP MTCH1 23787 hgsc.bcm.edu hg19 6 36949411 36949411 + Missense_Mutation SNP T T A novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . MTCH1 NM_014341 exon2 c.A359T p.N120I AGCACATTGGTCC . 21.0 21.0 71.0 0.0 . 24 . . . none . . PASS Atlas-SNP LRRN3 54674 hgsc.bcm.edu hg19 7 110763780 110763780 + Missense_Mutation SNP A A G novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . LRRN3 NM_018334 exon2 c.A952G p.N318D GCTACTAACAACC . 107.0 59.0 106.0 0.0 . 132 . . . none . . PASS Atlas-SNP TNPO3 23534 hgsc.bcm.edu hg19 7 128626935 128626935 + Missense_Mutation SNP T T A novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . TNPO3 NM_012470 exon12 c.A1538T p.K513M AGGGGCTTTTCAC . 128.0 77.0 123.0 0.0 . 148 . . . none . . PASS Atlas-SNP GBA2 57704 hgsc.bcm.edu hg19 9 35739010 35739010 + Missense_Mutation SNP A A G novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . GBA2 NM_020944 exon11 c.T1784C p.I595T TCCCCAATATCAT . 33.0 18.0 52.0 0.0 . 77 . . . none . . PASS Atlas-SNP ZNF169 169841 hgsc.bcm.edu hg19 9 97063238 97063238 + Silent SNP C C T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . ZNF169 NM_194320 exon5 c.C1398T p.G466G GCGTGGCTTTGGT . 79.0 38.0 87.0 0.0 . 60 . . . none . . PASS Atlas-SNP C9orf84 158401 hgsc.bcm.edu hg19 9 114503767 114503767 + Missense_Mutation SNP A A T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . C9orf84 NM_173521 exon9 c.T971A p.F324Y AGCAAAAATGGGT . 103.0 53.0 75.0 0.0 . 207 . . . none . . PASS Atlas-SNP TUBB4B 10383 hgsc.bcm.edu hg19 9 140137389 140137389 + Missense_Mutation SNP T T C novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . . NM_006088 exon4 c.T719C p.L240P CCTGCCTGCGCTT . 52.0 24.0 42.0 0.0 . . . . . none . . PASS Atlas-SNP ABLIM1 3983 hgsc.bcm.edu hg19 10 116225561 116225561 + Missense_Mutation SNP A A G novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . ABLIM1 NM_002313 exon12 c.T1337C p.M446T TGGATCATCCGAT . 174.0 88.0 178.0 0.0 . 131 . . . none . . PASS Atlas-SNP TRIM22 10346 hgsc.bcm.edu hg19 11 5717510 5717510 + Silent SNP C C T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . TRIM22 NM_001199573 exon2 c.C48T p.P16P CTGCCCCATCTGC . 72.0 40.0 66.0 0.0 . 66 . . . none . . PASS Atlas-SNP OR2AT4 341152 hgsc.bcm.edu hg19 11 74800733 74800733 + Missense_Mutation SNP G G A novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . OR2AT4 NM_001005285 exon1 c.C26T p.S9L TCCACTGATTCAT . 89.0 43.0 88.0 0.0 . 32 . . . none . . PASS Atlas-SNP MYO7A 4647 hgsc.bcm.edu hg19 11 76867021 76867021 + Silent SNP C C T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . MYO7A NM_001127179 exon5 c.C354T p.H118H AGAGCACATCCGC . 13.0 9.0 28.0 0.0 . 164 . . . none . . PASS Atlas-SNP CEP164 22897 hgsc.bcm.edu hg19 11 117222658 117222658 + Missense_Mutation SNP A A G novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 CEP164,caecum,carcinoma,0,1 CEP164 NM_001271933 exon4 c.A347G p.K116R AAAAAAAGGAAAA . 41.0 2.0 32.0 1.0 . 121 . . . none . . PASS Atlas-SNP METTL25 84190 hgsc.bcm.edu hg19 12 82752495 82752495 + Missense_Mutation SNP G G A novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . . NM_032230 exon1 c.G151A p.V51I GAGCTGGTCGACT . 103.0 39.0 83.0 0.0 . . . . . none . . PASS Atlas-SNP PROSER1 80209 hgsc.bcm.edu hg19 13 39587414 39587414 + Missense_Mutation SNP C C A novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . . NM_025138 exon11 c.G1975T p.A659S ACAATGCAGGATT . 99.0 50.0 151.0 0.0 . . . . . none . . PASS Atlas-SNP MYCBP2 23077 hgsc.bcm.edu hg19 13 77799654 77799654 + Missense_Mutation SNP T T C novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . MYCBP2 NM_015057 exon19 c.A2773G p.K925E TGATTTTGCTTGC . 146.0 65.0 152.0 0.0 . 1029 . . . none . . PASS Atlas-SNP IRF9 10379 hgsc.bcm.edu hg19 14 24632332 24632332 + Missense_Mutation SNP A A G novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . IRF9 NM_006084 exon3 c.A338G p.Q113R TGTATCAGTTGCT . 117.0 5.0 125.0 0.0 . 33 . . . none . . PASS Atlas-SNP FERMT2 10979 hgsc.bcm.edu hg19 14 53360052 53360052 + Missense_Mutation SNP T T C novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . FERMT2 NM_001135000 exon4 c.A485G p.E162G AGTGCCTCATCTT . 177.0 72.0 192.0 0.0 . 59 . . . none . . PASS Atlas-SNP CRAMP1L 57585 hgsc.bcm.edu hg19 16 1718163 1718163 + Silent SNP C C T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . CRAMP1L NM_020825 exon17 c.C3303T p.I1101I CTCCATCATTGAG . 129.0 36.0 102.0 0.0 . 60 . . . none . . PASS Atlas-SNP RPGRIP1L 23322 hgsc.bcm.edu hg19 16 53636027 53636027 + Missense_Mutation SNP C C A novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . RPGRIP1L NM_015272 exon27 c.G3909T p.Q1303H GACAGACTGGAGG . 107.0 72.0 89.0 0.0 . 118 . . . none . . PASS Atlas-SNP ELMO3 79767 hgsc.bcm.edu hg19 16 67236330 67236330 + Missense_Mutation SNP T T G novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . ELMO3 NM_024712 exon14 c.T1451G p.M484R CACCCATGTTCTT . 239.0 22.0 203.0 0.0 . 41 . . . none . . PASS Atlas-SNP CDK5RAP3 80279 hgsc.bcm.edu hg19 17 46051766 46051766 + Missense_Mutation SNP G G A novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . CDK5RAP3 NM_176096 exon5 c.G286A p.D96N ACTCAGGATTGGC . 144.0 15.0 143.0 0.0 . 38 . . . none . . PASS Atlas-SNP APPBP2 10513 hgsc.bcm.edu hg19 17 58525181 58525181 + Missense_Mutation SNP C C A novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . APPBP2 NM_006380 exon13 c.G1519T p.G507C CCTCACCAAAAAG . 149.0 62.0 145.0 0.0 . 48 . . . none . . PASS Atlas-SNP TRAPPC8 22878 hgsc.bcm.edu hg19 18 29488737 29488737 + Missense_Mutation SNP T T G novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . TRAPPC8 NM_014939 exon7 c.A1102C p.I368L GCCTAATTGTTTT . 73.0 31.0 84.0 0.0 . 126 . . . none . . PASS Atlas-SNP CNDP2 55748 hgsc.bcm.edu hg19 18 72179734 72179734 + Missense_Mutation SNP C C A novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . CNDP2 NM_018235 exon7 c.C709A p.H237N TCGGTGCATGAGG . 108.0 39.0 131.0 0.0 . 55 . . . none . . PASS Atlas-SNP ZNF236 7776 hgsc.bcm.edu hg19 18 74561610 74561610 + Missense_Mutation SNP G G A novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . ZNF236 NM_007345 exon2 c.G178A p.E60K GATCACGAGCGAA . 88.0 38.0 94.0 0.0 . 325 . . . none . . PASS Atlas-SNP MYO1F 4542 hgsc.bcm.edu hg19 19 8609279 8609279 + Missense_Mutation SNP C C A novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . MYO1F NM_012335 exon14 c.G1426T p.D476Y TCTGGTCTGCTCC . 49.0 24.0 55.0 0.0 . 128 . . . none . . PASS Atlas-SNP CACNA1A 773 hgsc.bcm.edu hg19 19 13397703 13397703 + Missense_Mutation SNP C C T rs200850308 bycluster TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . CACNA1A NM_001127221 exon20 c.G3170A p.R1057H TCTTGGCGGCCCA . 54.0 8.0 69.0 0.0 . 715 . . . weak . . PASS Atlas-SNP ZNF780B 163131 hgsc.bcm.edu hg19 19 40541550 40541550 + Missense_Mutation SNP G G T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . ZNF780B NM_001005851 exon5 c.C1216A p.Q406K GGTGTTGAATAAG . 176.0 79.0 190.0 0.0 . 143 . . . none . . PASS Atlas-SNP ZNF320 162967 hgsc.bcm.edu hg19 19 53384942 53384942 + Missense_Mutation SNP A A G novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . ZNF320 NM_207333 exon4 c.T437C p.L146S AAATGCAAATGAA . 185.0 80.0 218.0 0.0 . 67 . . . none . . PASS Atlas-SNP NCAM2 4685 hgsc.bcm.edu hg19 21 22656582 22656582 + Missense_Mutation SNP G G T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . NCAM2 NM_004540 exon3 c.G199T p.V67L CAGAGGGTAGTAG . 70.0 24.0 71.0 0.0 . 220 . . . none . . PASS Atlas-SNP BCL2L13 23786 hgsc.bcm.edu hg19 22 18138590 18138590 + Missense_Mutation SNP C C T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 BCL2L13,NS,carcinoma,0,1 BCL2L13 NM_001270732 exon2 c.C113T p.S38L TTTCCTCACCCCA . 34.0 33.0 82.0 0.0 . 27 . . . none . . PASS Atlas-SNP TENM1 10178 hgsc.bcm.edu hg19 X 123519705 123519705 + Silent SNP G G T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . . NM_001163278 exon29 c.C5898A p.T1966T ATGCAGGGTCTGT . 124.0 21.0 154.0 0.0 . . . . . none . . PASS Atlas-SNP ZDHHC9 51114 hgsc.bcm.edu hg19 X 128963040 128963040 + Missense_Mutation SNP G G T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . ZDHHC9 NM_001008222 exon3 c.C245A p.T82K AACAGTGTAGCCA . 84.0 82.0 85.0 0.0 . 41 . . . none . . PASS Atlas-SNP ATP6 0 hgsc.bcm.edu hg19 MT 9084 9084 + Silent SNP T T C novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . . ENST00000361899 exon1 c.T558C p.L186L TAACCTTCCCTCT . 8.0 6.0 7.0 0.0 . . . . . none . . PASS Atlas-SNP AMBP 259 hgsc.bcm.edu hg19 9 116837296 116837296 + Frame_Shift_Del DEL G G - novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . AMBP NM_001633 exon3 c.282delG p.T94fs . . 99.0 46.0 98.0 0.0 . 33 . 0.464646 0 none . . PASS Atlas-INDEL RABGAP1 23637 hgsc.bcm.edu hg19 9 125772734 125772738 + Frame_Shift_Del DEL TTCAG TTCAG - novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 TTCAG TTCAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . RABGAP1 NM_012197 exon11 c.1475_1479del p.492_493del . . 71.0 25.0 73.0 0.0 . 164 . 0.352113 0 none . . PASS Atlas-INDEL DHX57 90957 hgsc.bcm.edu hg19 2 39030017 39030017 + Frame_Shift_Del DEL T T - novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . DHX57 NM_198963 exon23 c.3858delG p.K1286fs . . 195.0 83.0 237.0 0.0 . 127 . 0.425641 0 none . . PASS Atlas-INDEL ZC3H13 23091 hgsc.bcm.edu hg19 13 46543501 46543502 + Frame_Shift_Ins INS - - T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . ZC3H13 NM_015070 exon14 c.3178_3179insA p.E1060fs . . 207.0 22.0 169.0 0.0 . 197 . 0.10628 0 none . . PASS Atlas-INDEL MBIP 51562 hgsc.bcm.edu hg19 14 36770005 36770006 + Frame_Shift_Ins INS - - T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . MBIP NM_016586 exon8 c.913_914insA p.V305fs . . 21.0 11.0 36.0 0.0 . 25 . 0.52381 0 none . . PASS Atlas-INDEL STMN4 81551 hgsc.bcm.edu hg19 8 27097566 27097566 + Frame_Shift_Del DEL T T - novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . STMN4 NM_030795 exon6 c.514delC p.L172fs . . 173.0 76.0 186.0 0.0 . 28 . 0.439306 0 none . . PASS Atlas-INDEL GBAS 2631 hgsc.bcm.edu hg19 7 56045954 56045955 + Frame_Shift_Del DEL AC AC - novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 AC AC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . GBAS NM_001483 exon2 c.227_228del p.76_76del . . 148.0 80.0 187.0 0.0 . 16 . 0.540541 0 none . . PASS Atlas-INDEL KIAA0825 285600 hgsc.bcm.edu hg19 5 93856355 93856362 + Frame_Shift_Del DEL AAATTTTT AAATTTTT - novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 AAATTTTT AAATTTTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . KIAA0825 NM_001145678 exon5 c.562_569del p.188_190del . . 170.0 25.0 112.0 0.0 . 172 . 0.147059 0 none . . PASS Atlas-INDEL ZER1 10444 hgsc.bcm.edu hg19 9 131515779 131515779 + Frame_Shift_Del DEL A A - novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . ZER1 NM_006336 exon4 c.411delC p.F137fs . . 57.0 26.0 77.0 0.0 . 49 . 0.45614 0 none . . PASS Atlas-INDEL MRPL22 29093 hgsc.bcm.edu hg19 5 154330411 154330411 + Frame_Shift_Del DEL T T - novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . MRPL22 NM_014180 exon3 c.107delG p.S36fs . . 184.0 125.0 128.0 0.0 . 18 . 0.679348 0 none . . PASS Atlas-INDEL NF2 4771 hgsc.bcm.edu hg19 22 30067890 30067905 + Frame_Shift_Del DEL AGGCTGCTGCAGATGA AGGCTGCTGCAGATGA - novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 AGGCTGCTGCAGATGA AGGCTGCTGCAGATGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . NF2 NM_181832 exon11 c.1074_1089del p.358_363del . . 38.0 22.0 87.0 0.0 . 1312 . 0.578947 0 none . . PASS Atlas-INDEL CASP10 843 hgsc.bcm.edu hg19 2 202073930 202073931 + Frame_Shift_Del DEL TG TG - novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 TG TG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . CASP10 NM_032977 exon9 c.1059_1060del p.353_354del . . 186.0 90.0 218.0 0.0 . 95 . 0.483871 0 none . . PASS Atlas-INDEL CNTNAP4 85445 hgsc.bcm.edu hg19 16 76587277 76587278 + Frame_Shift_Ins INS - - GC novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . CNTNAP4 NM_138994 exon21 c.3321_3322insGC p.K1107fs . . 43.0 25.0 21.0 0.0 . 600 . 0.581395 0 none . . PASS Atlas-INDEL RLF 6018 hgsc.bcm.edu hg19 1 40705390 40705391 + Frame_Shift_Ins INS - - T novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . RLF NM_012421 exon8 c.5016_5017insT p.L1672fs . . 103.0 54.0 130.0 0.0 . 152 . 0.524272 0 none . . PASS Atlas-INDEL XIRP2 129446 hgsc.bcm.edu hg19 2 168115244 168115247 + Frame_Shift_Del DEL TTTC TTTC - novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 TTTC TTTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . XIRP2 NM_001199143 exon11 c.2286_2289del p.762_763del . . 92.0 51.0 110.0 0.0 . 914 . 0.554348 0 none . . PASS Atlas-INDEL SNX10 29887 hgsc.bcm.edu hg19 7 26412183 26412200 + Frame_Shift_Del DEL GGAATCCTGAAAAATAAT GGAATCCTGAAAAATAAT - novel TCGA-EV-5902-01A-11D-1589-08 TCGA-EV-5902-10A-01D-1589-08 GGAATCCTGAAAAATAAT GGAATCCTGAAAAATAAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 05c0e7bb-5be8-4e8d-9724-8063e99cc058 c49e0138-d7e1-4094-9d2d-b41239dea126 . SNX10 NM_013322 exon7 c.596_821del p.199_202del . . 154.0 45.0 190.0 0.0 . 19 . 0.292208 0 none . . PASS Atlas-INDEL