Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
VPS13D	55187	hgsc.bcm.edu	hg19	1	12304650	12304650	+	Silent	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	VPS13D	NM_015378	exon5	c.T423C	p.V141V	CGTAGTTACAAGG	.	100.0	4.0	106.0	0.0	.	316	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC52	440699	hgsc.bcm.edu	hg19	1	165514059	165514059	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LRRC52	NM_001005214	exon1	c.C526G	p.L176V	ACTACTCTGGAGA	.	188.0	52.0	200.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
DIEXF	27042	hgsc.bcm.edu	hg19	1	210015618	210015618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DIEXF	NM_014388	exon9	c.G1494A	p.M498I	TTTGATGAATCAC	.	67.0	17.0	60.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
KHK	3795	hgsc.bcm.edu	hg19	2	27322367	27322367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	KHK	NM_006488	exon7	c.T733C	p.F245L	GATGCTTTCCCGC	.	98.0	27.0	133.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJC5G	285126	hgsc.bcm.edu	hg19	2	27503082	27503082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DNAJC5G	NM_173650	exon6	c.A569T	p.X190L	ATTTTTAAGAGAT	.	215.0	64.0	244.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
LTBP1	4052	hgsc.bcm.edu	hg19	2	33359941	33359941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LTBP1	NM_206943	exon5	c.A1115C	p.N372T	GTCAGAACAGCTG	.	74.0	23.0	63.0	0.0	.	317	.	.	.	none	.	.	PASS	Atlas-SNP
IMMT	10989	hgsc.bcm.edu	hg19	2	86371396	86371396	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	IMMT,NS,carcinoma,0,1	IMMT	NM_006839	exon15	c.G2272C	p.E758Q	CTCACTCTGGCTG	.	65.0	21.0	58.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
CWC22	57703	hgsc.bcm.edu	hg19	2	180810243	180810243	+	Silent	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CWC22	NM_020943	exon20	c.T2340C	p.P780P	TGTTATAGGATCT	.	272.0	71.0	289.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	hg19	2	212295693	212295693	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	ERBB4,colon,carcinoma,0,1	ERBB4	NM_001042599	exon21	c.G2620T	p.E874X	TGTACTCTTTTTC	.	185.0	54.0	200.0	0.0	.	480	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJB2	3300	hgsc.bcm.edu	hg19	2	220149459	220149459	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DNAJB2	NM_006736	exon9	c.C725A	p.S242X	CTGCCTCATGCCC	.	36.0	5.0	50.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
HDAC4	9759	hgsc.bcm.edu	hg19	2	239988463	239988463	+	Silent	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	HDAC4	NM_006037	exon24	c.T2943A	p.I981I	GTCGCAAATGGCG	.	124.0	31.0	139.0	0.0	.	127	.	.	.	none	.	.	PASS	Atlas-SNP
FARP2	9855	hgsc.bcm.edu	hg19	2	242433435	242433435	+	Silent	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	FARP2	NM_014808	exon27	c.G3060C	p.V1020V	GGAGGTGATCCAG	.	96.0	22.0	113.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
CLASP2	23122	hgsc.bcm.edu	hg19	3	33552091	33552091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CLASP2	NM_015097	exon37	c.C4303A	p.L1435I	GGTTTAGGGTTTC	.	74.0	13.0	93.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
LAMB2	3913	hgsc.bcm.edu	hg19	3	49159166	49159166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LAMB2	NM_002292	exon30	c.C5051T	p.A1684V	TCTTCTGCTGTAG	.	152.0	43.0	163.0	0.0	.	156	.	.	.	none	.	.	PASS	Atlas-SNP
TNFSF10	8743	hgsc.bcm.edu	hg19	3	172227069	172227069	+	Missense_Mutation	SNP	G	G	C	rs369143448	alternate_allele	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TNFSF10	NM_003810	exon4	c.C356G	p.P119R	CTCTGAGGACCTC	.	109.0	25.0	113.0	0.0	.	30	.	.	.	alt	.	.	PASS	Atlas-SNP
FGF12	2257	hgsc.bcm.edu	hg19	3	192078247	192078247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	FGF12	NM_021032	exon2	c.G280T	p.D94Y	TCCCATCAATGGT	.	79.0	20.0	82.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
SPON2	10417	hgsc.bcm.edu	hg19	4	1165206	1165206	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SPON2	NM_012445	exon3	c.T289A	p.F97I	CCGCAAAGTCGCG	.	52.0	8.0	65.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
UVSSA	57654	hgsc.bcm.edu	hg19	4	1347115	1347115	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_020894	exon5	c.A848C	p.E283A	CAGATGAGGACGA	.	23.0	6.0	25.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
FRG1	2483	hgsc.bcm.edu	hg19	4	190864392	190864392	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	FRG1,NS,carcinoma,0,1	FRG1	NM_004477	exon2	c.G98C	p.R33T	GAAAAAGAGAAGA	.	62.0	3.0	69.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM161B	153396	hgsc.bcm.edu	hg19	5	87521633	87521633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TMEM161B	NM_153354	exon4	c.T242C	p.I81T	AGGTCAATATCCT	.	150.0	30.0	130.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	hg19	5	176639042	176639042	+	Silent	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NSD1	NM_022455	exon5	c.T3642C	p.L1214L	CATACTTGAGGAA	.	55.0	18.0	58.0	0.0	.	416	.	.	.	none	.	.	PASS	Atlas-SNP
NUP153	9972	hgsc.bcm.edu	hg19	6	17688708	17688708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NUP153	NM_005124	exon2	c.C253T	p.H85Y	CCAGATGGTCCTC	.	128.0	39.0	189.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF184	7738	hgsc.bcm.edu	hg19	6	27420017	27420017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ZNF184	NM_007149	exon6	c.A1321G	p.T441A	CCCCAGTATGAGT	.	157.0	49.0	192.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
RGL2	5863	hgsc.bcm.edu	hg19	6	33260849	33260849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	RGL2	NM_004761	exon16	c.A1951G	p.I651V	GGATGATACGGCA	.	440.0	148.0	409.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
RPS10-NUDT3	0	hgsc.bcm.edu	hg19	6	34309651	34309651	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_001202470	exon6	c.A555C	p.E185D	ACAGACTTCACGA	.	56.0	12.0	65.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ENPP4	22875	hgsc.bcm.edu	hg19	6	46108114	46108114	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ENPP4	NM_014936	exon2	c.T794G	p.L265W	TAGATTTGAGCCC	.	66.0	16.0	87.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
DOPEY1	23033	hgsc.bcm.edu	hg19	6	83862020	83862020	+	Silent	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	DOPEY1,NS,carcinoma,0,1	DOPEY1	NM_015018	exon30	c.T6063A	p.P2021P	ATCACCTGCAATG	.	55.0	17.0	71.0	0.0	.	190	.	.	.	none	.	.	PASS	Atlas-SNP
CDC40	51362	hgsc.bcm.edu	hg19	6	110528715	110528715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CDC40	NM_015891	exon4	c.C413T	p.A138V	GTTATGCATTAGA	.	176.0	50.0	182.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
SLC16A10	117247	hgsc.bcm.edu	hg19	6	111409219	111409219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SLC16A10	NM_018593	exon1	c.G264T	p.Q88H	CATCCAGAACGCT	.	44.0	10.0	48.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
BRAT1	221927	hgsc.bcm.edu	hg19	7	2587034	2587034	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	BRAT1	NM_152743	exon3	c.G206C	p.S69T	CCAGAACTCAGGT	.	108.0	49.0	101.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
SCIN	85477	hgsc.bcm.edu	hg19	7	12679988	12679988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SCIN	NM_001112706	exon11	c.G1427A	p.G476D	CCCAAGGCAAAGA	.	91.0	38.0	35.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
IMMP2L	83943	hgsc.bcm.edu	hg19	7	111127299	111127299	+	Silent	SNP	T	T	A	rs201012120	by1000genomes;alternate_allele	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	IMMP2L	NM_032549	exon3	c.A234T	p.S78S	CACCAATGATACA	.	208.0	67.0	121.0	0.0	.	32	.	.	.	alt	T|1.000;C|0.000	.	PASS	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	hg19	7	149509420	149509420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_198455	exon69	c.G9818A	p.R3273Q	GCCTGCGGAGCCG	.	21.0	5.0	17.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
RRS1	23212	hgsc.bcm.edu	hg19	8	67342373	67342373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	RRS1	NM_015169	exon1	c.G1007A	p.G336E	GGAAAGGGGGCTT	.	103.0	27.0	81.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
EMC2	9694	hgsc.bcm.edu	hg19	8	109462688	109462688	+	Silent	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_014673	exon3	c.A186T	p.A62A	GATTGCAGCACTA	.	157.0	35.0	171.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
C9orf72	203228	hgsc.bcm.edu	hg19	9	27548367	27548367	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	C9orf72	NM_018325	exon11	c.A1313T	p.D438V	GTTAAATCAAGGT	.	143.0	27.0	107.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	hg19	9	84605892	84605892	+	Silent	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_001001670	exon4	c.G507A	p.S169S	GTCATCGTTCACT	.	73.0	18.0	79.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PHF2	5253	hgsc.bcm.edu	hg19	9	96416716	96416716	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PHF2	NM_005392	exon7	c.A811C	p.I271L	TATCTCATCAGGC	.	63.0	17.0	79.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA1	19	hgsc.bcm.edu	hg19	9	107599352	107599352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ABCA1	NM_005502	exon11	c.C1220A	p.A407D	AACACAGCCAGTT	.	53.0	14.0	69.0	0.0	.	244	.	.	.	none	.	.	PASS	Atlas-SNP
NUP188	23511	hgsc.bcm.edu	hg19	9	131755475	131755475	+	Splice_Site	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NUP188	NM_015354	exon26	c.2641-1G>A	.	CCACCAGGTGGCC	.	88.0	22.0	69.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
USP20	10868	hgsc.bcm.edu	hg19	9	132618631	132618631	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	USP20	NM_001008563	exon4	c.T127A	p.C43S	TGGGCCTGTCTGC	.	215.0	60.0	225.0	0.0	.	186	.	.	.	none	.	.	PASS	Atlas-SNP
ABL1	25	hgsc.bcm.edu	hg19	9	133730265	133730265	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ABL1	NM_007313	exon3	c.G388C	p.V130L	GGCTGGGTCCCAA	.	72.0	15.0	69.0	0.0	.	1632	.	.	.	none	.	.	PASS	Atlas-SNP
LARP4B	23185	hgsc.bcm.edu	hg19	10	858887	858887	+	Silent	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LARP4B	NM_015155	exon18	c.T2196C	p.T732T	GGGGGGAGTGCTC	.	111.0	34.0	113.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
PITRM1	10531	hgsc.bcm.edu	hg19	10	3191832	3191832	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PITRM1	NM_014889	exon16	c.T1852G	p.F618V	TGCAGAAGAGGGG	.	280.0	78.0	338.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
CSGALNACT2	55454	hgsc.bcm.edu	hg19	10	43651227	43651227	+	Silent	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CSGALNACT2	NM_018590	exon2	c.A630G	p.K210K	AGAGAAACTGATA	.	71.0	17.0	85.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
POLR3A	11128	hgsc.bcm.edu	hg19	10	79741971	79741971	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	POLR3A	NM_007055	exon28	c.G3700C	p.A1234P	TGACTGCCCGCAG	.	115.0	34.0	89.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1598	57698	hgsc.bcm.edu	hg19	10	118689489	118689489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	KIAA1598	NM_001258299	exon10	c.G883A	p.E295K	CATTTTCTAGTTG	.	137.0	35.0	148.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1598	57698	hgsc.bcm.edu	hg19	10	118689491	118689491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	KIAA1598	NM_001258299	exon10	c.T881C	p.L294P	TTTTCTAGTTGCT	.	133.0	34.0	146.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
GLRX3	10539	hgsc.bcm.edu	hg19	10	131964822	131964822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	GLRX3	NM_006541	exon5	c.G530T	p.S177I	AGTTTAGCAGTTT	.	131.0	31.0	162.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC56	115399	hgsc.bcm.edu	hg19	11	552211	552211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LRRC56	NM_198075	exon12	c.C1160T	p.A387V	TCAGGGCCTGGAG	.	78.0	25.0	72.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
TPP1	1200	hgsc.bcm.edu	hg19	11	6640045	6640045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TPP1	NM_000391	exon3	c.T191G	p.L64R	TGCACCAGCTCCG	.	88.0	24.0	112.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
F2	2147	hgsc.bcm.edu	hg19	11	46740795	46740795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	F2	NM_000506	exon1	c.G10A	p.V4I	GCGCACGTCCGAG	.	45.0	14.0	50.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
LRFN4	78999	hgsc.bcm.edu	hg19	11	66627368	66627368	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LRFN4	NM_024036	exon2	c.T1610A	p.L537X	TGGCCTTGCTGGT	.	31.0	13.0	32.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
PCF11	51585	hgsc.bcm.edu	hg19	11	82877690	82877690	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	PCF11_ENST00000298281,NS,carcinoma,0,4	PCF11	NM_015885	exon5	c.A1751T	p.N584I	AGGAGAATGTAGA	.	83.0	14.0	81.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
PCF11	51585	hgsc.bcm.edu	hg19	11	82878314	82878314	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PCF11	NM_015885	exon6	c.G1965C	p.E655D	TAAAGAGTTAACT	.	80.0	20.0	88.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A13	6540	hgsc.bcm.edu	hg19	12	346349	346349	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SLC6A13	NM_016615	exon6	c.G671C	p.W224S	CCCTTCCAGATGC	.	123.0	30.0	190.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
DCP1B	196513	hgsc.bcm.edu	hg19	12	2064679	2064679	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DCP1B	NM_152640	exon6	c.C570G	p.I190M	GTCATAGATGGCA	.	207.0	69.0	256.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
DDX47	51202	hgsc.bcm.edu	hg19	12	12980185	12980185	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DDX47	NM_016355	exon11	c.A1112C	p.D371A	GGTATGATGTGGA	.	126.0	42.0	133.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	hg19	12	26810769	26810769	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ITPR2	NM_002223	exon18	c.T2063A	p.I688N	TCATCAATGTCAT	.	108.0	33.0	119.0	0.0	.	270	.	.	.	none	.	.	PASS	Atlas-SNP
SLC2A13	114134	hgsc.bcm.edu	hg19	12	40265609	40265609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SLC2A13	NM_052885	exon5	c.A1189G	p.S397G	CTAAACTACCAAA	.	90.0	33.0	83.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
MARS	4141	hgsc.bcm.edu	hg19	12	57891971	57891971	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MARS	NM_004990	exon8	c.A802C	p.I268L	GTGCTCATCACCA	.	89.0	28.0	128.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
PEBP1	5037	hgsc.bcm.edu	hg19	12	118577332	118577332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PEBP1	NM_002567	exon3	c.G322T	p.G108C	TATGTGGGCTCGG	.	89.0	16.0	98.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
PSPC1	55269	hgsc.bcm.edu	hg19	13	20356720	20356720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PSPC1	NM_001042414	exon2	c.G178A	p.E60K	CCATCTCCTCGTC	.	76.0	24.0	39.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
SUPT16H	11198	hgsc.bcm.edu	hg19	14	21821861	21821861	+	Splice_Site	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SUPT16H	NM_007192	exon25	c.2920+1G>A	.	GACTAACCTGACT	.	147.0	36.0	161.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
NIN	51199	hgsc.bcm.edu	hg19	14	51219341	51219341	+	Silent	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NIN	NM_020921	exon21	c.A4845T	p.T1615T	CATTTCTGTTAGA	.	540.0	165.0	579.0	0.0	.	475	.	.	.	none	.	.	PASS	Atlas-SNP
MNAT1	4331	hgsc.bcm.edu	hg19	14	61434986	61434986	+	Silent	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MNAT1	NM_002431	exon8	c.T849C	p.L283L	GGACCTTGCTGGA	.	145.0	51.0	112.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
PAPLN	89932	hgsc.bcm.edu	hg19	14	73733497	73733497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PAPLN	NM_173462	exon24	c.T3377C	p.L1126S	GGCTATTGTGTGT	.	29.0	8.0	31.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
SOLH	6650	hgsc.bcm.edu	hg19	16	599030	599030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SOLH	NM_005632	exon5	c.G1487A	p.G496E	CTCCCGGGCCCGA	.	156.0	33.0	166.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM186	25880	hgsc.bcm.edu	hg19	16	8890423	8890423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TMEM186	NM_015421	exon2	c.A28G	p.R10G	GAAACCTACGCAC	.	94.0	24.0	67.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
SPNS1	83985	hgsc.bcm.edu	hg19	16	28989282	28989282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SPNS1	NM_001142451	exon3	c.A361G	p.R121G	GGTGACAGGTACA	.	175.0	79.0	166.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
PMFBP1	83449	hgsc.bcm.edu	hg19	16	72198700	72198700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PMFBP1	NM_031293	exon3	c.A128G	p.N43S	AGCTGATTGTCCT	.	185.0	81.0	128.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
AIPL1	23746	hgsc.bcm.edu	hg19	17	6328845	6328845	+	Missense_Mutation	SNP	C	C	T	rs201875142	bycluster;alternate_allele	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	AIPL1	NM_014336	exon6	c.G1090A	p.A364T	GCCCTGCGGACAG	.	150.0	65.0	115.0	0.0	.	34	.	.	.	alt	.	.	PASS	Atlas-SNP
AIPL1	23746	hgsc.bcm.edu	hg19	17	6328868	6328868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	AIPL1	NM_014336	exon6	c.C1067T	p.T356I	GGTGCTGTGGGTG	.	171.0	79.0	144.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
SKAP1	8631	hgsc.bcm.edu	hg19	17	46266785	46266785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SKAP1	NM_003726	exon5	c.G358A	p.D120N	CAATACCTTTGCT	.	118.0	24.0	108.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
TMX3	54495	hgsc.bcm.edu	hg19	18	66378637	66378637	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TMX3	NM_019022	exon3	c.T105G	p.F35L	TTCTTTAAACCTA	.	92.0	37.0	124.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
ATP8B3	148229	hgsc.bcm.edu	hg19	19	1785678	1785678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ATP8B3	NM_138813	exon26	c.G3183T	p.K1061N	CTCCGGCTTCTCC	.	28.0	7.0	25.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
SUGP2	10147	hgsc.bcm.edu	hg19	19	19115397	19115397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SUGP2	NM_014884	exon7	c.C2509A	p.L837I	GACATAGTTCAAA	.	153.0	41.0	147.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
ALDH16A1	126133	hgsc.bcm.edu	hg19	19	49969107	49969107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ALDH16A1	NM_153329	exon13	c.G1681A	p.G561S	GCTGAGGGTGGAG	.	55.0	13.0	69.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF836	162962	hgsc.bcm.edu	hg19	19	52659397	52659397	+	Silent	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ZNF836	NM_001102657	exon5	c.C1539T	p.L513L	TCGAGTGAGTAAT	.	109.0	29.0	131.0	0.0	.	158	.	.	.	none	.	.	PASS	Atlas-SNP
NLRP11	204801	hgsc.bcm.edu	hg19	19	56329449	56329449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NLRP11	NM_145007	exon4	c.C92A	p.A31E	TTGCGTGCCAGAT	.	113.0	28.0	129.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
BPIFB2	80341	hgsc.bcm.edu	hg19	20	31601760	31601760	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_025227	exon5	c.C453G	p.N151K	CAGTAACAGGTGG	.	46.0	16.0	49.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
BPIFB1	92747	hgsc.bcm.edu	hg19	20	31876601	31876601	+	Missense_Mutation	SNP	C	C	A	rs201956427	alternate_allele	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_033197	exon3	c.C170A	p.P57Q	AGCTGCCGCTGCT	.	91.0	4.0	59.0	0.0	.	.	.	.	.	alt	C|0.999;T|0.001	.	PASS	Atlas-SNP
ZNF341	84905	hgsc.bcm.edu	hg19	20	32376706	32376706	+	Silent	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	ZNF341,NS,carcinoma,0,1	ZNF341	NM_032819	exon13	c.G1869T	p.A623A	GTCTGCGTTCAAC	.	57.0	19.0	67.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
MIS18A	54069	hgsc.bcm.edu	hg19	21	33651272	33651272	+	Silent	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MIS18A	NM_018944	exon1	c.G54A	p.E18E	GCCGCACTCACAG	.	69.0	16.0	76.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
SON	6651	hgsc.bcm.edu	hg19	21	34922663	34922663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SON	NM_032195	exon3	c.T1126C	p.S376P	GAGTCGTCGGTGG	.	93.0	26.0	153.0	0.0	.	343	.	.	.	none	.	.	PASS	Atlas-SNP
HDAC6	10013	hgsc.bcm.edu	hg19	X	48682180	48682180	+	Silent	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	HDAC6	NM_006044	exon26	c.G3288A	p.R1096R	ATCTAGGGGCCTC	.	17.0	12.0	19.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
RGAG1	57529	hgsc.bcm.edu	hg19	X	109695935	109695935	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	RGAG1	NM_020769	exon3	c.T2090G	p.M697R	CACTAATGAGAGC	.	33.0	20.0	40.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
AP1G2	8906	hgsc.bcm.edu	hg19	14	24036472	24036472	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	AP1G2,colon,carcinoma,0,1	AP1G2	NM_003917	exon2	c.53delC	p.A18fs	.	.	70.0	15.0	63.0	0.0	.	75	.	0.214286	0	none	.	.	PASS	Atlas-INDEL
SLC35G2	80723	hgsc.bcm.edu	hg19	3	136573495	136573495	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_001097599	exon2	c.192delA	p.K64fs	.	.	162.0	36.0	146.0	0.0	.	.	.	0.222222	0	none	.	.	PASS	Atlas-INDEL
RINL	126432	hgsc.bcm.edu	hg19	19	39359912	39359925	+	Frame_Shift_Del	DEL	TGCAGCGTCCGCCT	TGCAGCGTCCGCCT	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	TGCAGCGTCCGCCT	TGCAGCGTCCGCCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	RINL	NM_001195833	exon11	c.1601_1614del	p.534_538del	.	.	101.0	19.0	117.0	0.0	.	32	.	0.188119	0	none	.	.	PASS	Atlas-INDEL
MAP7	9053	hgsc.bcm.edu	hg19	6	136693761	136693761	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MAP7	NM_001198609	exon8	c.845delC	p.S282fs	.	.	116.0	24.0	93.0	0.0	.	63	.	0.206897	0	none	.	.	PASS	Atlas-INDEL
VPS9D1	9605	hgsc.bcm.edu	hg19	16	89776218	89776219	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_004913	exon11	c.1355_1356del	p.452_452del	.	.	183.0	31.0	171.0	0.0	.	.	.	0.169399	0	none	.	.	PASS	Atlas-INDEL
STRIP1	85369	hgsc.bcm.edu	hg19	1	110587506	110587507	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	STRIP1	NM_033088	exon11	c.1331_1332insTA	p.F444fs	.	.	107.0	30.0	127.0	0.0	.	1	.	0.280374	0	none	.	.	PASS	Atlas-INDEL
NFX1	4799	hgsc.bcm.edu	hg19	9	33319104	33319106	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NFX1	NM_147134	exon9	c.1884_1886del	p.628_629del	.	.	61.0	22.0	56.0	0.0	.	85	.	0.360656	0	none	.	.	PASS	Atlas-INDEL
NAV3	89795	hgsc.bcm.edu	hg19	12	78513435	78513436	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NAV3	NM_014903	exon15	c.3459_3460insG	p.G1153fs	.	.	73.0	20.0	68.0	0.0	.	506	.	0.273973	0	none	.	.	PASS	Atlas-INDEL
DCHS2	54798	hgsc.bcm.edu	hg19	4	155180741	155180741	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DCHS2	NM_017639	exon20	c.5381delC	p.A1794fs	.	.	205.0	45.0	185.0	0.0	.	594	.	0.219512	0	none	.	.	PASS	Atlas-INDEL
SHPRH	257218	hgsc.bcm.edu	hg19	6	146264642	146264642	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SHPRH	NM_173082	exon9	c.1876delG	p.E626fs	.	.	234.0	64.0	206.0	0.0	.	169	.	0.273504	0	none	.	.	PASS	Atlas-INDEL