Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm NCDN 23154 hgsc.bcm.edu hg19 1 36029001 36029001 + Silent SNP C C T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . NCDN NM_014284 exon5 c.C1584T p.L528L CAACCTCGTGGTC . 52.0 22.0 51.0 0.0 . 79 . . . none . . PASS Atlas-SNP KCNC4 3749 hgsc.bcm.edu hg19 1 110768794 110768794 + Missense_Mutation SNP C C T rs200184574 TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . KCNC4 NM_001039574 exon3 c.C1813T p.R605W AGTGTCCGGAAAG . 77.0 36.0 66.0 0.0 . 113 . . . weak C|0.999;T|0.001 0.001 PASS Atlas-SNP AVPR1B 553 hgsc.bcm.edu hg19 1 206225073 206225073 + Silent SNP G G T rs150659663 alternate_allele TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . AVPR1B NM_000707 exon1 c.G633T p.P211P TCTGCCGGTGACC . 93.0 4.0 71.0 0.0 . 47 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP GRHL1 29841 hgsc.bcm.edu hg19 2 10126281 10126281 + Silent SNP A A G novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . GRHL1 NM_198182 exon9 c.A1140G p.T380T AAGCACAGATTTC . 113.0 28.0 67.0 0.0 . 95 . . . none . . PASS Atlas-SNP MATN3 4148 hgsc.bcm.edu hg19 2 20212199 20212199 + Missense_Mutation SNP G G C novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . MATN3 NM_002381 exon1 c.C194G p.T65S TCGCTGGTCCCGG . 107.0 26.0 162.0 0.0 . 28 . . . none . . PASS Atlas-SNP PTCD3 55037 hgsc.bcm.edu hg19 2 86348656 86348656 + Missense_Mutation SNP A A G rs200261667 TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . PTCD3 NM_017952 exon8 c.A593G p.Y198C GTTACTATGGTGA . 87.0 30.0 86.0 0.0 . 51 . . . weak . . PASS Atlas-SNP FAM178B 51252 hgsc.bcm.edu hg19 2 97559675 97559675 + Silent SNP C C T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . FAM178B NM_001122646 exon14 c.G1764A p.E588E GTCTAGCTCGGCA . 40.0 6.0 37.0 0.0 . 35 . . . none . . PASS Atlas-SNP CBLB 868 hgsc.bcm.edu hg19 3 105459395 105459395 + Missense_Mutation SNP G G T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . CBLB NM_170662 exon7 c.C926A p.T309N GGTATGGTCTGTA . 72.0 17.0 67.0 0.0 . 118 . . . none . . PASS Atlas-SNP HNRPDL 9987 hgsc.bcm.edu hg19 4 83350691 83350691 + Silent SNP C C T rs370944367 TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . HNRPDL NM_031372 exon1 c.G153A p.R51R CCCCTGCCGGGCG . 55.0 8.0 71.0 0.0 . 35 . . . weak . . PASS Atlas-SNP TRIML2 205860 hgsc.bcm.edu hg19 4 189020257 189020257 + Missense_Mutation SNP G G A novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . TRIML2 NM_173553 exon4 c.C403T p.R135C GGCTGCGGACCTG . 73.0 26.0 89.0 0.0 . 80 . . . none . . PASS Atlas-SNP PCDHGA5 56110 hgsc.bcm.edu hg19 5 140745680 140745680 + Missense_Mutation SNP G G A novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . PCDHGA5 NM_032054 exon1 c.G1783A p.D595N GCGGTGGACAAAG . 103.0 36.0 104.0 0.0 . 215 . . . none . . PASS Atlas-SNP DNPH1 10591 hgsc.bcm.edu hg19 6 43193850 43193850 + Silent SNP C C T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . . NM_006443 exon3 c.G297A p.L99L TACACCCAAGGAT . 41.0 16.0 33.0 0.0 . . . . . none . . PASS Atlas-SNP CDC5L 988 hgsc.bcm.edu hg19 6 44355567 44355567 + Nonsense_Mutation SNP C C T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . CDC5L NM_001253 exon1 c.C7T p.R3X ATGCCTCGAATTA . 45.0 10.0 50.0 0.0 . 86 . . . none . . PASS Atlas-SNP MAP3K4 4216 hgsc.bcm.edu hg19 6 161512563 161512563 + Missense_Mutation SNP T T G novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . MAP3K4 NM_006724 exon12 c.T3126G p.F1042L CAATTTTGGATTT . 140.0 6.0 151.0 0.0 . 364 . . . none . . PASS Atlas-SNP PPP1R9A 55607 hgsc.bcm.edu hg19 7 94540403 94540403 + Silent SNP T T G novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . PPP1R9A NM_017650 exon2 c.T978G p.A326A TTGTGCTGAAAGT . 188.0 57.0 121.0 0.0 . 264 . . . none . . PASS Atlas-SNP LAMB4 22798 hgsc.bcm.edu hg19 7 107743597 107743597 + Missense_Mutation SNP C C T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . LAMB4 NM_007356 exon10 c.G1072A p.V358M CACACACGCCCCC . 67.0 29.0 56.0 0.0 . 253 . . . none . . PASS Atlas-SNP CNOT4 4850 hgsc.bcm.edu hg19 7 135095338 135095338 + Missense_Mutation SNP T T C novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . CNOT4 NM_001190850 exon7 c.A748G p.N250D GAAAATTGGGATT . 94.0 32.0 52.0 0.0 . 146 . . . none . . PASS Atlas-SNP TG 7038 hgsc.bcm.edu hg19 8 133899367 133899367 + Missense_Mutation SNP G G T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . TG NM_003235 exon9 c.G1750T p.A584S CAACATGCTATCT . 165.0 42.0 132.0 0.0 . 416 . . . none . . PASS Atlas-SNP TRAPPC9 83696 hgsc.bcm.edu hg19 8 140743457 140743457 + Silent SNP G G T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . TRAPPC9 NM_031466 exon23 c.C3588A p.G1196G CGACTGGCCGGAC . 111.0 22.0 68.0 0.0 . 114 . . . none . . PASS Atlas-SNP UHRF2 115426 hgsc.bcm.edu hg19 9 6420922 6420922 + Missense_Mutation SNP G G T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . UHRF2 NM_152896 exon2 c.G164T p.G55V AAAATGGATATAC . 57.0 4.0 65.0 0.0 . 50 . . . none . . PASS Atlas-SNP DDX31 64794 hgsc.bcm.edu hg19 9 135545507 135545507 + Missense_Mutation SNP T T A novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . DDX31 NM_022779 exon1 c.A130T p.S44C CAAGACTACCGCG . 69.0 31.0 62.0 0.0 . 76 . . . none . . PASS Atlas-SNP PNPLA7 375775 hgsc.bcm.edu hg19 9 140356049 140356049 + Silent SNP G G T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . PNPLA7 NM_001098537 exon33 c.C3780A p.S1260S CGTGAAGGAGGCG . 41.0 15.0 50.0 0.0 . 124 . . . none . . PASS Atlas-SNP LCOR 84458 hgsc.bcm.edu hg19 10 98715228 98715228 + Missense_Mutation SNP C C T rs145573126 TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . LCOR NM_001170766 exon8 c.C851T p.T284M CACAAACGGAGAG . 216.0 12.0 138.0 0.0 . 32 . . . weak C|1.000;T|0.000 0.000 PASS Atlas-SNP MUC2 4583 hgsc.bcm.edu hg19 11 1093105 1093105 + Missense_Mutation SNP C C G novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . MUC2 NM_002457 exon30 c.C4924G p.P1642A CCAACCCCAACAC . 19.0 4.0 20.0 0.0 . 614 . . . none . . PASS Atlas-SNP CAND1 55832 hgsc.bcm.edu hg19 12 67675700 67675700 + Missense_Mutation SNP A A G novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . CAND1 NM_018448 exon2 c.A79G p.T27A ATGGCTACAAATG . 69.0 20.0 51.0 0.0 . 100 . . . none . . PASS Atlas-SNP PHLDA1 22822 hgsc.bcm.edu hg19 12 76424606 76424606 + Nonsense_Mutation SNP G G A novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . PHLDA1 NM_007350 exon1 c.C916T p.Q306X GGGGCTGCTGCTG . 37.0 11.0 25.0 0.0 . 39 . . . none . . PASS Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112601434 112601434 + Missense_Mutation SNP A A G novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . . NM_001109662 exon74 c.T12407C p.I4136T AGGGGGATGATGG . 83.0 5.0 61.0 0.0 . . . . . none . . PASS Atlas-SNP EP400 57634 hgsc.bcm.edu hg19 12 132547084 132547084 + Silent SNP G G A novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . EP400 NM_015409 exon47 c.G8172A p.Q2724Q GCAGCAGCAGCAA . 110.0 8.0 78.0 0.0 . 370 . . . none . . PASS Atlas-SNP IPO4 79711 hgsc.bcm.edu hg19 14 24653966 24653966 + Missense_Mutation SNP G G A novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . IPO4 NM_024658 exon16 c.C1526T p.T509M GCAGCCGTAGCTG . 130.0 42.0 105.0 0.0 . 74 . . . none . . PASS Atlas-SNP FLVCR2 55640 hgsc.bcm.edu hg19 14 76107632 76107632 + Silent SNP C C T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . FLVCR2 NM_017791 exon8 c.C1449T p.L483L AGCCCTCACTGGT . 78.0 20.0 54.0 0.0 . 39 . . . none . . PASS Atlas-SNP ATG2B 55102 hgsc.bcm.edu hg19 14 96752216 96752216 + Missense_Mutation SNP G G C novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . ATG2B NM_018036 exon42 c.C6113G p.A2038G ACCACTGCCGGAG . 82.0 25.0 84.0 0.0 . 169 . . . none . . PASS Atlas-SNP FRMD5 84978 hgsc.bcm.edu hg19 15 44166102 44166102 + Missense_Mutation SNP C C G novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . FRMD5 NM_032892 exon14 c.G1694C p.S565T AGCAGGCTCACCA . 103.0 41.0 86.0 0.0 . 45 . . . none . . PASS Atlas-SNP MAN2C1 4123 hgsc.bcm.edu hg19 15 75653705 75653705 + Nonsense_Mutation SNP C C T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . MAN2C1 NM_001256494 exon11 c.G1236A p.W412X GCCCTCCCAGAAA . 80.0 34.0 80.0 0.0 . 76 . . . none . . PASS Atlas-SNP KRT27 342574 hgsc.bcm.edu hg19 17 38935785 38935785 + Missense_Mutation SNP A A T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . KRT27 NM_181537 exon5 c.T941A p.L314H ATCTCAAGGGTTT . 182.0 37.0 123.0 0.0 . 41 . . . none . . PASS Atlas-SNP KRTAP17-1 83902 hgsc.bcm.edu hg19 17 39471774 39471774 + Silent SNP G G A rs368577794 TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd KRTAP17-1,colon,carcinoma,0,3 KRTAP17-1 NM_031964 exon1 c.C129T p.C43C GCCCCCGCAGCCA . 70.0 8.0 34.0 0.0 . 14 . . . weak . . PASS Atlas-SNP CDR2L 30850 hgsc.bcm.edu hg19 17 72998179 72998179 + Missense_Mutation SNP G G A rs139957978 TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . . NM_014603 exon4 c.G362A p.R121H TTGAGCGCCTCCA . 139.0 30.0 95.0 0.0 . . . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP TLE6 79816 hgsc.bcm.edu hg19 19 2987356 2987356 + Nonsense_Mutation SNP C C T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . TLE6 NM_001143986 exon8 c.C544T p.Q182X ACAGAGCAGGCAC . 41.0 13.0 56.0 0.0 . 68 . . . none . . PASS Atlas-SNP ELOF1 84337 hgsc.bcm.edu hg19 19 11664884 11664884 + Silent SNP G G A novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . ELOF1 NM_032377 exon3 c.C129T p.R43R GGTGTTGCGGGCA . 120.0 44.0 132.0 0.0 . 10 . . . none . . PASS Atlas-SNP BPIFB3 359710 hgsc.bcm.edu hg19 20 31644491 31644491 + Missense_Mutation SNP G G A novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . . NM_182658 exon2 c.G268A p.E90K GTTGTCGAGGAGC . 48.0 17.0 37.0 0.0 . . . . . none . . PASS Atlas-SNP CCT8L2 150160 hgsc.bcm.edu hg19 22 17072541 17072541 + Silent SNP G G A novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd CCT8L2,right_upper_lobe,carcinoma,0,1 CCT8L2 NM_014406 exon1 c.C900T p.D300D CTCCTCGTCGACC . 78.0 40.0 157.0 0.0 . 150 . . . none . . PASS Atlas-SNP HUWE1 10075 hgsc.bcm.edu hg19 X 53616526 53616526 + Missense_Mutation SNP A A T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . HUWE1 NM_031407 exon36 c.T4442A p.L1481Q TGCTTCAGAATCA . 61.0 21.0 65.0 0.0 . 724 . . . none . . PASS Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66766365 66766365 + Silent SNP C C T novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . AR NM_000044 exon1 c.C1377T p.G459G CGGCGGCGGCGGC . 181.0 20.0 256.0 0.0 . 249 . . . none . . PASS Atlas-SNP PGAM4 441531 hgsc.bcm.edu hg19 X 77225038 77225038 + Missense_Mutation SNP G G A novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . PGAM4 NM_001029891 exon1 c.C98T p.A33V TGGCCCGCCGGGC . 154.0 51.0 158.0 0.0 . 28 . . . none . . PASS Atlas-SNP NRK 203447 hgsc.bcm.edu hg19 X 105153848 105153848 + Missense_Mutation SNP G G C novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . NRK NM_198465 exon13 c.G2215C p.E739Q CAGCATGAGGAAG . 386.0 119.0 390.0 0.0 . 321 . . . none . . PASS Atlas-SNP ARHGAP29 9411 hgsc.bcm.edu hg19 1 94668545 94668554 + Frame_Shift_Del DEL CAAGTAGAGG CAAGTAGAGG - novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 CAAGTAGAGG CAAGTAGAGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . ARHGAP29 NM_004815 exon10 c.875_884del p.292_295del . . 77.0 11.0 71.0 0.0 . 132 . 0.142857 0 none . . PASS Atlas-INDEL IVNS1ABP 10625 hgsc.bcm.edu hg19 1 185267408 185267411 + Frame_Shift_Del DEL ACAA ACAA - novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 ACAA ACAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . IVNS1ABP NM_006469 exon15 c.1686_1689del p.562_563del . . 104.0 30.0 88.0 0.0 . 80 . 0.288462 0 none . . PASS Atlas-Indel,Pindel BICC1 80114 hgsc.bcm.edu hg19 10 60566346 60566347 + Frame_Shift_Ins INS - - TT novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . BICC1 NM_001080512 exon16 c.2184_2185insTT p.A728fs . . 196.0 43.0 148.0 0.0 . 121 . 0.219388 0 none . . PASS Atlas-Indel,Pindel ATP2B3 492 hgsc.bcm.edu hg19 X 152826209 152826211 + In_Frame_Del DEL TCT TCT - novel TCGA-F9-A8NY-01A-11D-A35Z-10 TCGA-F9-A8NY-10A-01D-A35Z-10 TCT TCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq af2f02ad-e74d-4e56-98c2-b25edf27b998 49bd4b7d-d8c0-4ce3-adcf-81f81c37b6fd . ATP2B3 NM_001001344 exon17 c.2914_2916del p.972_972del . . 129.0 50.0 143.0 0.0 . 552 . 0.387597 0 none . . PASS Atlas-Indel,Pindel