Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ZNF684	127396	hgsc.bcm.edu	hg19	1	41012446	41012446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	ZNF684	NM_152373	exon5	c.A451G	p.R151G	TATAATAGAAGTT	.	50.0	35.0	40.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
FPGT-TNNI3K	100526835	hgsc.bcm.edu	hg19	1	74905226	74905226	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	.	NM_001199327	exon22	c.T2234G	p.I745S	ACACCATCAAAGC	.	70.0	26.0	87.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	hg19	1	179609042	179609042	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	TDRD5	NM_173533	exon10	c.A1589C	p.H530P	CGGGACATCTCTG	.	325.0	51.0	207.0	0.0	.	149	.	.	.	none	.	.	PASS	Atlas-SNP
ALPPL2	251	hgsc.bcm.edu	hg19	2	233272617	233272617	+	Missense_Mutation	SNP	G	G	A	rs145892470		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	ALPPL2	NM_031313	exon5	c.G538A	p.A180T	GCCTACGCCCACA	.	170.0	26.0	137.0	0.0	.	36	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52422876	52422876	+	Silent	SNP	C	C	T	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	DNAH1	NM_015512	exon59	c.C9418T	p.L3140L	GAGAACCTGCAGT	.	60.0	39.0	70.0	0.0	.	534	.	.	.	none	.	.	PASS	Atlas-SNP
ANKS1A	23294	hgsc.bcm.edu	hg19	6	35051232	35051232	+	Silent	SNP	C	C	A	rs371531749	alternate_allele	TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	ANKS1A	NM_015245	exon20	c.C2946A	p.I982I	CATCATCCTGTCC	.	108.0	72.0	116.0	0.0	.	123	.	.	.	alt	.	.	PASS	Atlas-SNP
GSTK1	373156	hgsc.bcm.edu	hg19	7	142965268	142965268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	GSTK1	NM_001143679	exon6	c.C790T	p.H264Y	CTGGCGCACCTGC	.	495.0	101.0	415.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
CDKN2A	1029	hgsc.bcm.edu	hg19	9	21971120	21971120	+	Nonsense_Mutation	SNP	G	G	A	rs121913388	bycluster	TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	CDKN2A_ENST00000498124,bladder,carcinoma,0,7	CDKN2A	NM_000077	exon2	c.C238T	p.R80X	CGGGTCGGGTGAG	.	38.0	26.0	40.0	0.0	.	4810	.	.	.	weak	.	.	PASS	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	hg19	9	134350415	134350415	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	PRRC2B	NM_013318	exon15	c.G2899C	p.G967R	GAGCTAGGGGAGG	.	12.0	6.0	19.0	0.0	.	266	.	.	.	none	.	.	PASS	Atlas-SNP
C11orf70	85016	hgsc.bcm.edu	hg19	11	101937281	101937281	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	C11orf70	NM_032930	exon4	c.C334G	p.H112D	TTTTTTCATCGGT	.	66.0	37.0	72.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
FAR2	55711	hgsc.bcm.edu	hg19	12	29485566	29485566	+	Silent	SNP	T	T	C	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	FAR2	NM_018099	exon11	c.T1291C	p.L431L	AACTGGTTGGAAT	.	102.0	45.0	49.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	hg19	17	78355391	78355391	+	Silent	SNP	C	C	G	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	RNF213	NM_001256071	exon57	c.C13842G	p.G4614G	AAAAGGCTTTCTG	.	182.0	99.0	97.0	0.0	.	766	.	.	.	none	.	.	PASS	Atlas-SNP
RPRD1A	55197	hgsc.bcm.edu	hg19	18	33606995	33606995	+	Silent	SNP	C	C	T	rs202026701	bycluster	TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	RPRD1A_ENST00000319040,NS,carcinoma,0,2	RPRD1A	NM_018170	exon6	c.G657A	p.A219A	CATACACGCATCC	.	73.0	45.0	103.0	0.0	.	30	.	.	.	weak	C|0.999;T|0.001	0.001	PASS	Atlas-SNP
MED16	10025	hgsc.bcm.edu	hg19	19	879943	879943	+	Missense_Mutation	SNP	G	G	C	rs76403059	bycluster	TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	MED16,colon,carcinoma,0,1	MED16	NM_005481	exon8	c.C1347G	p.H449Q	CTTCCCGTGGCTG	.	18.0	3.0	34.0	1.0	.	61	.	.	.	weak	.	.	PASS	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	hg19	19	40408648	40408648	+	Silent	SNP	G	G	C	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	FCGBP	NM_003890	exon8	c.C4191G	p.P1397P	ATCCTTGGGGTCG	.	116.0	34.0	165.0	0.0	.	416	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A14	11254	hgsc.bcm.edu	hg19	X	115573956	115573956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	SLC6A14	NM_007231	exon4	c.G448A	p.E150K	CAAAGTGAACTAC	.	140.0	83.0	191.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
SAV1	60485	hgsc.bcm.edu	hg19	14	51132011	51132012	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	SAV1	NM_021818	exon2	c.421_422insT	p.D141_G142delinsX	.	.	63.0	35.0	78.0	0.0	.	18	.	0.555556	0	none	.	.	PASS	Atlas-INDEL
PTPRC	5788	hgsc.bcm.edu	hg19	1	198678927	198678927	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	PTPRC	NM_002838	exon11	c.1144delA	p.S382fs	.	.	225.0	24.0	141.0	0.0	.	229	.	0.106667	0	none	.	.	PASS	Atlas-INDEL
POLR1B	84172	hgsc.bcm.edu	hg19	2	113308552	113308559	+	Frame_Shift_Del	DEL	CTTTCTTC	CTTTCTTC	-	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	CTTTCTTC	CTTTCTTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	POLR1B	NM_019014	exon5	c.734_741del	p.245_247del	.	.	172.0	25.0	162.0	0.0	.	95	.	0.145349	0	none	.	.	PASS	Atlas-INDEL