Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm IPO13 9670 hgsc.bcm.edu hg19 1 44423086 44423086 + Missense_Mutation SNP C C A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . IPO13 NM_014652 exon7 c.C1405A p.L469I GAGGCCCTCCTCT . 69.0 54.0 153.0 0.0 . 86 . . . none . . PASS Atlas-SNP RRP15 51018 hgsc.bcm.edu hg19 1 218480910 218480910 + Missense_Mutation SNP T T G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . RRP15 NM_016052 exon4 c.T641G p.L214W GTGTTTTGAGAGG . 28.0 24.0 59.0 0.0 . 33 . . . none . . PASS Atlas-SNP GALNT2 2590 hgsc.bcm.edu hg19 1 230385000 230385000 + Missense_Mutation SNP C C A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . GALNT2 NM_004481 exon9 c.C888A p.N296K GGGGAACCCAGTC . 29.0 18.0 74.0 0.0 . 83 . . . none . . PASS Atlas-SNP RGS7 6000 hgsc.bcm.edu hg19 1 241094065 241094065 + Missense_Mutation SNP G G C novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . RGS7 NM_002924 exon6 c.C337G p.P113A AATAGGGGGTCTG . 81.0 68.0 173.0 0.0 . 308 . . . none . . PASS Atlas-SNP SLC40A1 30061 hgsc.bcm.edu hg19 2 190428363 190428363 + Missense_Mutation SNP A A T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . SLC40A1 NM_014585 exon7 c.T1349A p.V450E ATGGGCACAGATT . 95.0 40.0 118.0 0.0 . 51 . . . none . . PASS Atlas-SNP HECW2 57520 hgsc.bcm.edu hg19 2 197187250 197187250 + Missense_Mutation SNP C C T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . HECW2 NM_020760 exon7 c.G836A p.G279E AGTTTCCCCAGAA . 194.0 77.0 223.0 0.0 . 239 . . . none . . PASS Atlas-SNP ABCB6 10058 hgsc.bcm.edu hg19 2 220075814 220075814 + Missense_Mutation SNP A A G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . ABCB6 NM_005689 exon15 c.T1985C p.L662P GACCGGAGAGAGG . 142.0 55.0 183.0 0.0 . 76 . . . none . . PASS Atlas-SNP SEC13 6396 hgsc.bcm.edu hg19 3 10342967 10342967 + Missense_Mutation SNP T T C novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . SEC13 NM_183352 exon9 c.A947G p.E316G TGGCCCTCTGTCA . 98.0 40.0 130.0 0.0 . 35 . . . none . . PASS Atlas-SNP MLH1 4292 hgsc.bcm.edu hg19 3 37042512 37042512 + Missense_Mutation SNP G G A rs63750133 alternate_allele TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . MLH1 NM_000249 exon3 c.G274A p.A92T GATTTAGCCAGTA . 82.0 41.0 111.0 0.0 . 226 . . . alt . . PASS Atlas-SNP XYLB 9942 hgsc.bcm.edu hg19 3 38404484 38404484 + Silent SNP C C G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . XYLB NM_005108 exon4 c.C267G p.V89V TCAAGTCCTAGCC . 109.0 48.0 116.0 0.0 . 50 . . . none . . PASS Atlas-SNP SMARCC1 6599 hgsc.bcm.edu hg19 3 47716999 47716999 + Missense_Mutation SNP C C G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 SMARCC1,NS,carcinoma,0,1 SMARCC1 NM_003074 exon18 c.G1805C p.R602P TCAGTACGGAGAC . 49.0 2.0 49.0 0.0 . 85 . . . none . . PASS Atlas-SNP SLC38A3 10991 hgsc.bcm.edu hg19 3 50257565 50257565 + Missense_Mutation SNP A A G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . SLC38A3 NM_006841 exon16 c.A1471G p.I491V ATCATCATTGACT . 13.0 10.0 14.0 0.0 . 22 . . . none . . PASS Atlas-SNP ABHD10 55347 hgsc.bcm.edu hg19 3 111700691 111700691 + Missense_Mutation SNP A A G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . ABHD10 NM_001272069 exon2 c.A203G p.Y68C TGGCTTATAAGAA . 140.0 62.0 136.0 0.0 . 20 . . . none . . PASS Atlas-SNP ZMAT3 64393 hgsc.bcm.edu hg19 3 178785387 178785387 + Nonsense_Mutation SNP C C A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 ZMAT3,NS,carcinoma,0,1 ZMAT3 NM_022470 exon2 c.G154T p.E52X ATAACTCTTCTTC . 123.0 45.0 161.0 0.0 . 42 . . . none . . PASS Atlas-SNP SPOCK3 50859 hgsc.bcm.edu hg19 4 167713322 167713322 + Missense_Mutation SNP G G T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . SPOCK3 NM_016950 exon8 c.C717A p.S239R CTTACTGCTTCTC . 60.0 4.0 75.0 0.0 . 90 . . . none . . PASS Atlas-SNP ARHGEF28 64283 hgsc.bcm.edu hg19 5 73205322 73205322 + Missense_Mutation SNP T T A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . . NM_001080479 exon34 c.T4247A p.I1416N ACTCTATCCTCCG . 20.0 10.0 30.0 0.0 . . . . . none . . PASS Atlas-SNP SEMA6A 57556 hgsc.bcm.edu hg19 5 115822558 115822558 + Silent SNP G G A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . SEMA6A NM_020796 exon10 c.C849T p.C283C AACTGAGCAGTTC . 137.0 59.0 136.0 0.0 . 93 . . . none . . PASS Atlas-SNP SLC25A48 153328 hgsc.bcm.edu hg19 5 135178132 135178132 + Missense_Mutation SNP C C A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . SLC25A48 NM_145282 exon2 c.C74A p.P25H GCCACCCTCTGGA . 204.0 69.0 180.0 0.0 . 37 . . . none . . PASS Atlas-SNP RANBP17 64901 hgsc.bcm.edu hg19 5 170323085 170323085 + Missense_Mutation SNP T T A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . RANBP17 NM_022897 exon5 c.T455A p.I152K GAGTAATAATCCT . 106.0 43.0 90.0 0.0 . 108 . . . none . . PASS Atlas-SNP SLC17A4 10050 hgsc.bcm.edu hg19 6 25773825 25773825 + Missense_Mutation SNP G G A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . SLC17A4 NM_005495 exon8 c.G910A p.E304K TTCTGTGAATACT . 92.0 36.0 89.0 0.0 . 79 . . . none . . PASS Atlas-SNP MUC21 394263 hgsc.bcm.edu hg19 6 30955264 30955264 + Missense_Mutation SNP T T A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . MUC21 NM_001010909 exon2 c.T1312A p.S438T ACCAACTCTGGGT . 179.0 75.0 211.0 0.0 . 98 . . . none . . PASS Atlas-SNP MCM3 4172 hgsc.bcm.edu hg19 6 52141973 52141973 + Missense_Mutation SNP G G C novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 MCM3,pharynx,carcinoma,0,1 MCM3 NM_002388 exon8 c.C1192G p.Q398E GAAGCTGAGACTT . 39.0 12.0 65.0 0.0 . 63 . . . none . . PASS Atlas-SNP KIAA1549 57670 hgsc.bcm.edu hg19 7 138597164 138597164 + Missense_Mutation SNP A A C novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . KIAA1549 NM_020910 exon3 c.T2921G p.I974S TCTTTGATTGCTG . 71.0 43.0 71.0 0.0 . 314 . . . none . . PASS Atlas-SNP ATP6V0E2 155066 hgsc.bcm.edu hg19 7 149576654 149576654 + Missense_Mutation SNP C C G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . ATP6V0E2 NM_001100592 exon3 c.C530G p.P177R AATACCCGCACTG . 28.0 19.0 25.0 0.0 . 12 . . . none . . PASS Atlas-SNP LYN 4067 hgsc.bcm.edu hg19 8 56922610 56922610 + Missense_Mutation SNP C C A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . LYN NM_002350 exon13 c.C1480A p.Q494K TACTTACAGAGCG . 103.0 39.0 125.0 0.0 . 54 . . . none . . PASS Atlas-SNP GEM 2669 hgsc.bcm.edu hg19 8 95262646 95262646 + Silent SNP G G A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . GEM NM_181702 exon5 c.C783T p.S261S GGGCATGCTCTCC . 67.0 25.0 83.0 0.0 . 40 . . . none . . PASS Atlas-SNP BNC2 54796 hgsc.bcm.edu hg19 9 16552664 16552664 + Missense_Mutation SNP C C T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . BNC2 NM_017637 exon5 c.G533A p.G178E TGTGTCCCATAGA . 97.0 4.0 96.0 0.0 . 166 . . . none . . PASS Atlas-SNP OR13J1 392309 hgsc.bcm.edu hg19 9 35869823 35869823 + Silent SNP C C T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . OR13J1 NM_001004487 exon1 c.G576A p.T192T GACCGACGTGTTG . 56.0 18.0 89.0 0.0 . 37 . . . none . . PASS Atlas-SNP SECISBP2 79048 hgsc.bcm.edu hg19 9 91965762 91965762 + Missense_Mutation SNP C C T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . SECISBP2 NM_024077 exon14 c.C2108T p.S703L TACAGTCAAAAGG . 67.0 34.0 75.0 0.0 . 64 . . . none . . PASS Atlas-SNP RAD23B 5887 hgsc.bcm.edu hg19 9 110091836 110091836 + Missense_Mutation SNP G G A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 RAD23B,colon,carcinoma,0,1 RAD23B NM_002874 exon10 c.G1129A p.G377R GCATTAGGATTTC . 102.0 33.0 114.0 0.0 . 31 . . . none . . PASS Atlas-SNP RABGAP1 23637 hgsc.bcm.edu hg19 9 125751642 125751642 + Silent SNP C C T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . RABGAP1 NM_012197 exon5 c.C657T p.V219V CTGTGTCAGAGGG . 90.0 44.0 119.0 0.0 . 164 . . . none . . PASS Atlas-SNP MLLT10 8028 hgsc.bcm.edu hg19 10 22022934 22022934 + Missense_Mutation SNP A A T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 MLLT10_ENST00000377072,NS,carcinoma,0,2 MLLT10 NM_004641 exon21 c.A2782T p.I928F AATGGCATTGTAG . 78.0 33.0 86.0 0.0 . 183 . . . none . . PASS Atlas-SNP ANXA11 311 hgsc.bcm.edu hg19 10 81927005 81927005 + Missense_Mutation SNP A A C novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . ANXA11 NM_145868 exon6 c.T626G p.L209R TTCCGCAGGACCT . 61.0 31.0 70.0 0.0 . 32 . . . none . . PASS Atlas-SNP SLC35F2 54733 hgsc.bcm.edu hg19 11 107677532 107677532 + Missense_Mutation SNP A A C novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . SLC35F2 NM_017515 exon4 c.T485G p.V162G TGGATCACTCTGT . 81.0 32.0 100.0 0.0 . 29 . . . none . . PASS Atlas-SNP SLC6A12 6539 hgsc.bcm.edu hg19 12 308019 308019 + Missense_Mutation SNP A A T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . SLC6A12 NM_001122848 exon8 c.T790A p.Y264N CCTGGTAGGCTCC . 128.0 69.0 104.0 0.0 . 60 . . . none . . PASS Atlas-SNP KDM5A 5927 hgsc.bcm.edu hg19 12 401948 401948 + Missense_Mutation SNP A A G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . KDM5A NM_001042603 exon27 c.T4843C p.C1615R TTTGGCAGTTCTG . 151.0 48.0 137.0 0.0 . 307 . . . none . . PASS Atlas-SNP C12orf5 57103 hgsc.bcm.edu hg19 12 4461705 4461705 + Missense_Mutation SNP C C G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . C12orf5 NM_020375 exon6 c.C661G p.L221V GCCACTCTGAGCA . 125.0 49.0 136.0 0.0 . 28 . . . none . . PASS Atlas-SNP GPR162 27239 hgsc.bcm.edu hg19 12 6933600 6933600 + Missense_Mutation SNP T T C novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . GPR162 NM_019858 exon2 c.T536C p.F179S TCGGCTTTGGCGT . 97.0 39.0 131.0 0.0 . 55 . . . none . . PASS Atlas-SNP ITPR2 3709 hgsc.bcm.edu hg19 12 26809443 26809443 + Missense_Mutation SNP C C G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . ITPR2 NM_002223 exon19 c.G2231C p.R744P TACTGGCGATCCA . 85.0 27.0 91.0 0.0 . 270 . . . none . . PASS Atlas-SNP DIP2B 57609 hgsc.bcm.edu hg19 12 51092173 51092173 + Missense_Mutation SNP A A G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . DIP2B NM_173602 exon18 c.A2111G p.Y704C TGAGCTATGGGGT . 104.0 38.0 117.0 0.0 . 167 . . . none . . PASS Atlas-SNP ESPL1 9700 hgsc.bcm.edu hg19 12 53680427 53680427 + Missense_Mutation SNP C C A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . ESPL1 NM_012291 exon18 c.C3907A p.P1303T AGTGTCCCTGGCT . 79.0 40.0 103.0 0.0 . 158 . . . none . . PASS Atlas-SNP GLIPR1L2 144321 hgsc.bcm.edu hg19 12 75785104 75785104 + Missense_Mutation SNP C C A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . GLIPR1L2 NM_152436 exon1 c.C208A p.P70T GTCATTCCCCGAG . 81.0 39.0 92.0 0.0 . 54 . . . none . . PASS Atlas-SNP CUL4A 8451 hgsc.bcm.edu hg19 13 113915023 113915023 + Missense_Mutation SNP C C G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . CUL4A NM_001008895 exon19 c.C2134G p.H712D CTTGGTCATAATC . 31.0 14.0 43.0 0.0 . 50 . . . none . . PASS Atlas-SNP LAMP1 3916 hgsc.bcm.edu hg19 13 113963979 113963979 + Missense_Mutation SNP T T C novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . LAMP1 NM_005561 exon3 c.T205C p.S69P CTGCCATCAGATG . 115.0 45.0 110.0 0.0 . 41 . . . none . . PASS Atlas-SNP NEMF 9147 hgsc.bcm.edu hg19 14 50292672 50292672 + Missense_Mutation SNP G G A rs370101877 TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . NEMF NM_004713 exon16 c.C1490T p.A497V TTGAATGCCTATT . 23.0 17.0 47.0 0.0 . 79 . . . weak . . PASS Atlas-SNP PPM1A 5494 hgsc.bcm.edu hg19 14 60712638 60712638 + Missense_Mutation SNP A A G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . PPM1A NM_177952 exon1 c.A73G p.R25G AAAAGAAGAATGG . 4.0 4.0 12.0 0.0 . 72 . . . none . . PASS Atlas-SNP MYO5A 4644 hgsc.bcm.edu hg19 15 52606371 52606371 + Silent SNP T T C novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . MYO5A NM_000259 exon40 c.A5364G p.P1788P ATTAACTGGAGTA . 82.0 29.0 88.0 0.0 . 145 . . . none . . PASS Atlas-SNP SRRM2 23524 hgsc.bcm.edu hg19 16 2812806 2812806 + Missense_Mutation SNP C C G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . SRRM2 NM_016333 exon11 c.C2277G p.S759R GCGGAGCAGGTCT . 285.0 170.0 237.0 0.0 . 263 . . . none . . PASS Atlas-SNP PRKCB 5579 hgsc.bcm.edu hg19 16 23848699 23848699 + Silent SNP C C T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . PRKCB NM_212535 exon2 c.C177T p.G59G CAGGGGCTTCGGG . 342.0 202.0 337.0 1.0 . 383 . . . none . . PASS Atlas-SNP ZC3H18 124245 hgsc.bcm.edu hg19 16 88653085 88653085 + Silent SNP C C T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . ZC3H18 NM_144604 exon3 c.C681T p.F227F GTTCTTCATGAAA . 74.0 18.0 44.0 0.0 . 90 . . . none . . PASS Atlas-SNP SAT2 112483 hgsc.bcm.edu hg19 17 7530935 7530935 + Nonsense_Mutation SNP G G A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . SAT2 NM_133491 exon1 c.C19T p.R7X CCTCTCGGATCCG . 58.0 18.0 77.0 0.0 . 8 . . . none . . PASS Atlas-SNP LINGO3 645191 hgsc.bcm.edu hg19 19 2290213 2290213 + Silent SNP C C T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . LINGO3 NM_001101391 exon2 c.G1563A p.P521P GTCGAGCGGCGCG . 59.0 23.0 47.0 0.0 . 19 . . . none . . PASS Atlas-SNP ZNF557 79230 hgsc.bcm.edu hg19 19 7075688 7075688 + Silent SNP C C G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . ZNF557 NM_001044387 exon4 c.C54G p.A18A CCCAGCCTCTCAG . 108.0 52.0 140.0 0.0 . 40 . . . none . . PASS Atlas-SNP CACNA1A 773 hgsc.bcm.edu hg19 19 13346025 13346025 + Nonsense_Mutation SNP G G A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . CACNA1A NM_001127221 exon33 c.C5134T p.Q1712X TCACCTGCATCCC . 15.0 5.0 21.0 0.0 . 715 . . . none . . PASS Atlas-SNP ZNF461 92283 hgsc.bcm.edu hg19 19 37147417 37147417 + Missense_Mutation SNP G G C novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . ZNF461 NM_153257 exon4 c.C165G p.I55M TGAGGAGATTACG . 78.0 32.0 94.0 0.0 . 73 . . . none . . PASS Atlas-SNP ERCC2 2068 hgsc.bcm.edu hg19 19 45868315 45868315 + Silent SNP G G A rs139263710 alternate_allele TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . ERCC2 NM_000400 exon6 c.C462T p.H154H TCGGCAGTGGGGC . 50.0 23.0 60.0 0.0 . 78 . . . alt G|1.000;C|0.000 . PASS Atlas-SNP BAX 581 hgsc.bcm.edu hg19 19 49464330 49464330 + Silent SNP T T C novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . BAX NM_004324 exon5 c.T633C p.Y211Y GGTCTATAATGCG . 96.0 45.0 83.0 0.0 . 69 . . . none . . PASS Atlas-SNP ZNF816-ZNF321P 100529240 hgsc.bcm.edu hg19 19 53432286 53432286 + Missense_Mutation SNP A A G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . . NM_001202473 exon4 c.T572C p.L191S GATGTCAAAATTA . 200.0 89.0 214.0 0.0 . . . . . none . . PASS Atlas-SNP NLRP9 338321 hgsc.bcm.edu hg19 19 56244868 56244868 + Missense_Mutation SNP A A T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . NLRP9 NM_176820 exon2 c.T329A p.I110K TCCCATATGAGTT . 124.0 57.0 149.0 0.0 . 163 . . . none . . PASS Atlas-SNP MZF1 7593 hgsc.bcm.edu hg19 19 59073766 59073766 + Missense_Mutation SNP G G T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . MZF1 NM_198055 exon6 c.C1878A p.H626Q ACCGCAGTGGTAG . 17.0 11.0 16.0 0.0 . 37 . . . none . . PASS Atlas-SNP CPXM1 56265 hgsc.bcm.edu hg19 20 2776796 2776796 + Silent SNP C C G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . CPXM1 NM_001184699 exon10 c.G1254C p.L418L GCCCACCAGCTCT . 83.0 32.0 101.0 0.0 . 107 . . . none . . PASS Atlas-SNP HUNK 30811 hgsc.bcm.edu hg19 21 33371363 33371363 + Missense_Mutation SNP A A C novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . HUNK NM_014586 exon11 c.A2011C p.M671L GGACAGATGTTAA . 114.0 36.0 143.0 0.0 . 74 . . . none . . PASS Atlas-SNP MICAL3 57553 hgsc.bcm.edu hg19 22 18293513 18293513 + Missense_Mutation SNP T T C novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . MICAL3 NM_015241 exon28 c.A5512G p.R1838G CCTGTCTCCGAGC . 76.0 26.0 68.0 0.0 . 53 . . . none . . PASS Atlas-SNP POLR2F 5435 hgsc.bcm.edu hg19 22 38355418 38355418 + Missense_Mutation SNP C C G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . POLR2F NM_021974 exon3 c.C156G p.I52M GCGAATCACCACA . 230.0 99.0 294.0 0.0 . 13 . . . none . . PASS Atlas-SNP KDELR3 11015 hgsc.bcm.edu hg19 22 38875733 38875733 + Missense_Mutation SNP A A G novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . KDELR3 NM_016657 exon3 c.A328G p.N110D CTTGAAAACTACA . 386.0 171.0 418.0 0.0 . 39 . . . none . . PASS Atlas-SNP ND1 10625 hgsc.bcm.edu hg19 MT 3316 3316 + Missense_Mutation SNP G G A novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . . ENST00000361390 exon1 c.G10A p.A4T CCCATGGCCAACC . 5.0 5.0 0.0 0.0 . . . . . none . . PASS Atlas-SNP TTC3 7267 hgsc.bcm.edu hg19 21 38568034 38568035 + Frame_Shift_Ins INS - - T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . TTC3 NM_003316 exon42 c.5276_5277insT p.S1759fs . . 305.0 129.0 340.0 0.0 . 182 . 0.422951 0 none . . PASS Atlas-INDEL HSPA9 3313 hgsc.bcm.edu hg19 5 137904733 137904733 + Frame_Shift_Del DEL T T - novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . HSPA9 NM_004134 exon5 c.417delT p.N139fs . . 103.0 40.0 100.0 0.0 . 49 . 0.38835 0 none . . PASS Atlas-INDEL SEMA3D 223117 hgsc.bcm.edu hg19 7 84636164 84636164 + Frame_Shift_Del DEL G G - novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . SEMA3D NM_152754 exon16 c.1863delT p.T621fs . . 441.0 305.0 276.0 0.0 . 177 . 0.69161 0 none . . PASS Atlas-INDEL DISP2 85455 hgsc.bcm.edu hg19 15 40661086 40661086 + Frame_Shift_Del DEL A A - novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . DISP2 NM_033510 exon8 c.2772delC p.Y924X . . 98.0 40.0 138.0 0.0 . 86 . 0.408163 0 none . . PASS Atlas-INDEL KIAA1109 84162 hgsc.bcm.edu hg19 4 123229112 123229112 + Frame_Shift_Del DEL T T - novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . KIAA1109 NM_015312 exon56 c.9849delG p.L3283fs . . 171.0 65.0 193.0 0.0 . 424 . 0.380117 0 none . . PASS Atlas-INDEL SIDT2 51092 hgsc.bcm.edu hg19 11 117058116 117058118 + In_Frame_Del DEL TTC TTC - novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 TTC TTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . SIDT2 NM_001040455 exon11 c.1037_1039del p.346_347del . . 153.0 58.0 170.0 0.0 . 82 . 0.379085 0 none . . PASS Atlas-INDEL FERD3L 222894 hgsc.bcm.edu hg19 7 19184646 19184646 + Frame_Shift_Del DEL T T - novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . FERD3L NM_152898 exon1 c.341delT p.M114fs . . 80.0 26.0 64.0 0.0 . 63 . 0.325 0 none . . PASS Atlas-INDEL DLGAP5 9787 hgsc.bcm.edu hg19 14 55655750 55655751 + Frame_Shift_Ins INS - - AT novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . DLGAP5 NM_014750 exon2 c.148_149insAT p.V50fs . . 43.0 28.0 58.0 0.0 . 84 . 0.651163 0 none . . PASS Atlas-INDEL MOCS2 4338 hgsc.bcm.edu hg19 5 52397195 52397196 + Frame_Shift_Ins INS - - T novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . MOCS2 NM_004531 exon5 c.371_372insA p.R124fs . . 175.0 83.0 175.0 0.0 . 28 . 0.474286 0 none . . PASS Atlas-INDEL CHMP3 51652 hgsc.bcm.edu hg19 2 86790455 86790455 + Frame_Shift_Del DEL T T - novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . . NM_001193517 exon1 c.18delG p.K6fs . . 219.0 93.0 223.0 0.0 . . . 0.424658 0 none . . PASS Atlas-INDEL RAD54B 25788 hgsc.bcm.edu hg19 8 95419720 95419720 + Frame_Shift_Del DEL T T - novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . RAD54B NM_012415 exon5 c.729delT p.N243fs . . 116.0 58.0 99.0 0.0 . 88 . 0.5 0 none . . PASS Atlas-INDEL NEIL2 252969 hgsc.bcm.edu hg19 8 11637150 11637150 + Frame_Shift_Del DEL A A - novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . NEIL2 NM_001135746 exon3 c.181delG p.E61fs . . 190.0 91.0 183.0 0.0 . 14 . 0.478947 0 none . . PASS Atlas-INDEL PKD1 5310 hgsc.bcm.edu hg19 16 2155478 2155488 + Splice_Site DEL GGGGCAGGCAG GGGGCAGGCAG - novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 GGGGCAGGCAG GGGGCAGGCAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . PKD1 . . . . . . 99.0 18.0 190.0 0.0 . 184 . 0.181818 0 none . . PASS Atlas-INDEL SLC30A1 7779 hgsc.bcm.edu hg19 1 211749303 211749308 + In_Frame_Del DEL ATCTAA ATCTAA - novel TCGA-GL-8500-01A-11D-2396-08 TCGA-GL-8500-10A-01D-2396-08 ATCTAA ATCTAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 41177191-296c-48e7-945d-6b382e01efef c4639d70-5aff-4a23-b1bd-33ce71bff272 . SLC30A1 NM_021194 exon2 c.947_952del p.316_318del . . 95.0 72.0 214.0 0.0 . 27 . 0.757895 0 none . . PASS Atlas-INDEL