Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
RIMS3	9783	hgsc.bcm.edu	hg19	1	41107442	41107442	+	Silent	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RIMS3	NM_014747	exon3	c.G156A	p.K52K	CACCATCTTGGCA	.	88.0	18.0	60.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
SLC25A44	9673	hgsc.bcm.edu	hg19	1	156169658	156169658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SLC25A44	NM_014655	exon2	c.T20C	p.I7T	GCAACATCCAGAT	.	123.0	16.0	179.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186024754	186024754	+	Silent	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	HMCN1	NM_031935	exon45	c.T7092A	p.V2364V	GTGTGTTGCTGTG	.	258.0	43.0	331.0	0.0	.	797	.	.	.	none	.	.	PASS	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	215820886	215820886	+	Silent	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	USH2A	NM_206933	exon67	c.C14769A	p.I4923I	GAAACTGATCCAC	.	165.0	25.0	196.0	0.0	.	1168	.	.	.	none	.	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228462497	228462497	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	OBSCN	NM_001271223	exon24	c.G7033C	p.V2345L	ATCACCGTGGAGG	.	104.0	18.0	47.0	0.0	.	2142	.	.	.	none	.	.	PASS	Atlas-SNP
NCKAP1	10787	hgsc.bcm.edu	hg19	2	183826949	183826949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	NCKAP1	NM_205842	exon19	c.G1837A	p.A613T	GTTTGGCCATTTC	.	99.0	4.0	141.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
IKZF2	22807	hgsc.bcm.edu	hg19	2	213872808	213872808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	IKZF2	NM_016260	exon8	c.G857T	p.G286V	TTTTCCCCTGGAA	.	71.0	12.0	119.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
PER2	8864	hgsc.bcm.edu	hg19	2	239162231	239162231	+	Silent	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PER2	NM_022817	exon19	c.C2433T	p.T811T	AGATCCGGTGCTC	.	53.0	12.0	35.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52429465	52429465	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	DNAH1	NM_015512	exon69	c.T11110A	p.S3704T	GCCATCTCCCTGG	.	199.0	36.0	207.0	0.0	.	534	.	.	.	none	.	.	PASS	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	hg19	3	89478285	89478285	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	EPHA3	NM_005233	exon12	c.A2104C	p.M702L	GAATACATGGAGA	.	77.0	11.0	74.0	0.0	.	501	.	.	.	none	.	.	PASS	Atlas-SNP
CP	1356	hgsc.bcm.edu	hg19	3	148924070	148924070	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CP	NM_000096	exon6	c.A1093C	p.N365H	GGATATTATCCTT	.	112.0	10.0	135.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
CPZ	8532	hgsc.bcm.edu	hg19	4	8621250	8621250	+	Missense_Mutation	SNP	G	G	A	rs144042196	bycluster	TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CPZ	NM_001014447	exon11	c.G1865A	p.R622H	GGGCGCGCAGGCA	.	8.0	5.0	3.0	0.0	.	95	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
GRID2	2895	hgsc.bcm.edu	hg19	4	94690404	94690404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	GRID2	NM_001510	exon15	c.C2404T	p.H802Y	CTGAAGCACAAAT	.	156.0	21.0	168.0	0.0	.	233	.	.	.	none	.	.	PASS	Atlas-SNP
ZCCHC10	54819	hgsc.bcm.edu	hg19	5	132342536	132342536	+	Silent	SNP	T	T	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ZCCHC10	NM_017665	exon2	c.A118C	p.R40R	ATTTTCTTTTTCC	.	153.0	16.0	108.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75860944	75860944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	COL12A1	NM_004370	exon21	c.C4060A	p.H1354N	ATGCATGGGTATC	.	100.0	16.0	100.0	0.0	.	385	.	.	.	none	.	.	PASS	Atlas-SNP
MYO6	4646	hgsc.bcm.edu	hg19	6	76602272	76602272	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MYO6	NM_004999	exon28	c.G2972C	p.R991P	TGGCCCGACAGAA	.	97.0	15.0	88.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
MMS22L	253714	hgsc.bcm.edu	hg19	6	97629854	97629854	+	Silent	SNP	A	A	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MMS22L	NM_198468	exon16	c.T2310A	p.I770I	AAGTTGAATAATT	.	67.0	10.0	78.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
SERINC1	57515	hgsc.bcm.edu	hg19	6	122777747	122777747	+	Silent	SNP	A	A	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SERINC1	NM_020755	exon3	c.T250C	p.L84L	CAACCAAAATGTT	.	74.0	13.0	78.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
SP4	6671	hgsc.bcm.edu	hg19	7	21469335	21469335	+	Silent	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SP4	NM_003112	exon3	c.T552C	p.T184T	TCCAACTAGTAGT	.	71.0	15.0	64.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
MYO1G	64005	hgsc.bcm.edu	hg19	7	45010552	45010552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MYO1G	NM_033054	exon8	c.C953A	p.P318H	TCCCGGGGTGTGG	.	87.0	12.0	24.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
TMC1	117531	hgsc.bcm.edu	hg19	9	75355127	75355127	+	Splice_Site	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	TMC1	NM_138691	exon9	c.453+2T>C	.	CCAAGGTAGGTAT	.	73.0	16.0	76.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
NELFB	25920	hgsc.bcm.edu	hg19	9	140158762	140158762	+	Silent	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	.	NM_015456	exon6	c.G849A	p.L283L	GGAGCTGCAGGGG	.	37.0	8.0	25.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
FAM208B	54906	hgsc.bcm.edu	hg19	10	5781661	5781661	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	.	NM_017782	exon13	c.C1528T	p.Q510X	AGTGTTCAACCAG	.	112.0	6.0	134.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
EPC1	80314	hgsc.bcm.edu	hg19	10	32573863	32573863	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	EPC1	NM_025209	exon10	c.A1507T	p.T503S	TATTTGTTTCTGA	.	119.0	21.0	140.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
MBL2	4153	hgsc.bcm.edu	hg19	10	54527970	54527970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MBL2	NM_000242	exon4	c.T674C	p.L225P	TTCAGTAGCAATA	.	219.0	39.0	263.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC86	79080	hgsc.bcm.edu	hg19	11	60609627	60609627	+	Silent	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CCDC86	NM_024098	exon1	c.G30T	p.R10R	CCGACGGCTGGGA	.	98.0	18.0	71.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
SF3B2	10992	hgsc.bcm.edu	hg19	11	65835416	65835416	+	Splice_Site	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SF3B2	NM_006842	exon20	c.2331-1G>T	.	TTCGCAGAAGTGA	.	92.0	4.0	94.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
PANX1	24145	hgsc.bcm.edu	hg19	11	93911576	93911576	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PANX1	NM_015368	exon3	c.C363G	p.Y121X	CCTGTACCTGCCC	.	184.0	41.0	191.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
LPCAT3	10162	hgsc.bcm.edu	hg19	12	7125633	7125633	+	Silent	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	LPCAT3	NM_005768	exon1	c.G96A	p.A32A	GGACGTCGCCAAC	.	143.0	39.0	122.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
SCN8A	6334	hgsc.bcm.edu	hg19	12	52188171	52188171	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SCN8A	NM_014191	exon26	c.T4541A	p.I1514N	AAGGAATCGTCTT	.	72.0	25.0	82.0	0.0	.	331	.	.	.	none	.	.	PASS	Atlas-SNP
KRT84	3890	hgsc.bcm.edu	hg19	12	52779218	52779218	+	Missense_Mutation	SNP	C	C	G	rs148258545	bycluster;alternate_allele	TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	KRT84	NM_033045	exon1	c.G152C	p.G51A	CGACTACCAAAGC	.	164.0	35.0	166.0	0.0	.	61	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
C12orf29	91298	hgsc.bcm.edu	hg19	12	88442035	88442035	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	C12orf29	NM_001009894	exon7	c.T814A	p.C272S	GGCTTATGCTGGC	.	141.0	41.0	91.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
RPH3A	22895	hgsc.bcm.edu	hg19	12	113333603	113333603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RPH3A	NM_001143854	exon21	c.C1879A	p.H627N	ATCAAACACAGTG	.	101.0	11.0	96.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39262352	39262352	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	FREM2	NM_207361	exon1	c.G871C	p.A291P	CGAGGGGCTCCTG	.	107.0	22.0	116.0	0.0	.	385	.	.	.	none	.	.	PASS	Atlas-SNP
PLEKHH1	57475	hgsc.bcm.edu	hg19	14	68038953	68038953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PLEKHH1	NM_020715	exon11	c.C1687A	p.R563S	CTGCAGCGCACCT	.	37.0	10.0	29.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
EML5	161436	hgsc.bcm.edu	hg19	14	89105224	89105224	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	EML5	NM_183387	exon31	c.A4265C	p.N1422T	TCATCATTATGTT	.	72.0	12.0	50.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
WDR20	91833	hgsc.bcm.edu	hg19	14	102689211	102689211	+	Silent	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	WDR20	NM_181291	exon4	c.T1737A	p.T579T	TGGAACTGTAGTG	.	232.0	42.0	221.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
BAHD1	22893	hgsc.bcm.edu	hg19	15	40751142	40751142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	BAHD1	NM_014952	exon2	c.C479A	p.A160D	ATCGTGCTACTGG	.	44.0	10.0	26.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
UBR1	197131	hgsc.bcm.edu	hg19	15	43378432	43378432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	UBR1	NM_174916	exon2	c.G88A	p.D30N	GCTGATCCCACCA	.	30.0	6.0	37.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
NEDD4	4734	hgsc.bcm.edu	hg19	15	56207639	56207639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	NEDD4	NM_198400	exon1	c.C1391A	p.P464Q	ATATTTGGATAAG	.	98.0	4.0	107.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
MMP25	64386	hgsc.bcm.edu	hg19	16	3100091	3100091	+	Missense_Mutation	SNP	G	G	A	rs146181243		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MMP25	NM_022468	exon3	c.G314A	p.R105H	GGCGGCGTCGCCG	.	22.0	9.0	0.0	0.0	.	35	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
COG8	84342	hgsc.bcm.edu	hg19	16	69368509	69368509	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	COG8	NM_032382	exon3	c.T1328A	p.L443Q	GCAACCAGAATAT	.	153.0	27.0	167.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88497561	88497561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ZNF469	NM_001127464	exon2	c.C3599T	p.P1200L	AGGAGCCTGAAAC	.	108.0	28.0	78.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
CHRNB1	1140	hgsc.bcm.edu	hg19	17	7350850	7350850	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CHRNB1	NM_000747	exon6	c.A491T	p.N164I	GGCAGAATTGCAC	.	166.0	21.0	171.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
SLC35G6	643664	hgsc.bcm.edu	hg19	17	7386013	7386013	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	POLR2A_ENST00000412468,NS,carcinoma,0,1	.	NM_001102614	exon2	c.G710C	p.G237A	TGCCAGGCCTCTT	.	183.0	25.0	158.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
UTP6	55813	hgsc.bcm.edu	hg19	17	30219812	30219812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	UTP6	NM_018428	exon5	c.A314G	p.D105G	ACATCGTCCTGCA	.	76.0	10.0	76.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
SLC25A19	60386	hgsc.bcm.edu	hg19	17	73273550	73273550	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SLC25A19	NM_001126122	exon6	c.C658G	p.L220V	AAAGCAGGTTTTG	.	105.0	27.0	104.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF57	126295	hgsc.bcm.edu	hg19	19	2917873	2917873	+	Silent	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	ZNF57,NS,malignant_melanoma,0,1	ZNF57	NM_173480	exon4	c.G1254A	p.K418K	AGAGAAGCCTTAT	.	166.0	7.0	183.0	2.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
CC2D1A	54862	hgsc.bcm.edu	hg19	19	14028999	14028999	+	Missense_Mutation	SNP	G	G	T	rs368763604	alternate_allele	TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CC2D1A	NM_017721	exon7	c.G865T	p.V289L	TTCCGCGTGGCTA	.	156.0	32.0	67.0	0.0	.	67	.	.	.	alt	.	.	PASS	Atlas-SNP
GRAMD1A	57655	hgsc.bcm.edu	hg19	19	35505160	35505160	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	GRAMD1A	NM_020895	exon10	c.C938G	p.P313R	TGACCCCGGTGGC	.	168.0	21.0	72.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF154	7710	hgsc.bcm.edu	hg19	19	58213806	58213806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ZNF154	NM_001085384	exon3	c.A511G	p.S171G	TTTTGCTAAAGGA	.	296.0	41.0	335.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	hg19	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532	bycluster	TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ZNF814	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	106.0	14.0	81.0	0.0	.	93	.	.	.	weak	C|0.500;T|0.500	0.500	PASS	Atlas-SNP
IDH3B	3420	hgsc.bcm.edu	hg19	20	2639397	2639397	+	Silent	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	IDH3B	NM_006899	exon12	c.G1158A	p.X386X	AGGGCTCTAGCTC	.	210.0	23.0	274.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
IDH3B	3420	hgsc.bcm.edu	hg19	20	2639398	2639398	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	IDH3B	NM_006899	exon12	c.A1157T	p.X386L	GGGCTCTAGCTCC	.	210.0	20.0	278.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
IDH3B	3420	hgsc.bcm.edu	hg19	20	2639399	2639399	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	IDH3B	NM_006899	exon12	c.T1156G	p.X386E	GGCTCTAGCTCCC	.	212.0	18.0	276.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
SOGA1	140710	hgsc.bcm.edu	hg19	20	35443624	35443624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SOGA1	NM_080627	exon5	c.G2221A	p.E741K	GCTGTTCCTTGAC	.	85.0	17.0	98.0	0.0	.	136	.	.	.	none	.	.	PASS	Atlas-SNP
FOXO4	4303	hgsc.bcm.edu	hg19	X	70316474	70316474	+	Silent	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	FOXO4	NM_005938	exon1	c.C96T	p.T32T	CTGCACCTGGCCC	.	96.0	23.0	84.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
OCRL	4952	hgsc.bcm.edu	hg19	X	128678970	128678970	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	OCRL	NM_000276	exon3	c.T155G	p.V52G	AGCATGTTCAAGA	.	37.0	14.0	49.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15575	15575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	.	ENST00000361789	exon1	c.G829A	p.A277T	CTATTCGCCTACA	.	152.0	55.0	0.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
RAB15	376267	hgsc.bcm.edu	hg19	14	65418357	65418362	+	In_Frame_Del	DEL	GTATCT	GTATCT	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	GTATCT	GTATCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RAB15	NM_198686	exon3	c.206_211del	p.69_71del	.	.	148.0	19.0	189.0	0.0	.	23	.	0.128378	0	none	.	.	PASS	Atlas-Indel,Pindel
PKDCC	91461	hgsc.bcm.edu	hg19	2	42281437	42281445	+	In_Frame_Del	DEL	AATGCCTAC	AATGCCTAC	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	AATGCCTAC	AATGCCTAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PKDCC	NM_138370	exon3	c.1023_1031del	p.341_344del	.	.	199.0	16.0	208.0	0.0	.	21	.	0.080402	0	none	.	.	PASS	Atlas-Indel,Pindel
LRRC42	115353	hgsc.bcm.edu	hg19	1	54417869	54417876	+	Frame_Shift_Del	DEL	AAGAGAAG	AAGAGAAG	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	AAGAGAAG	AAGAGAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	LRRC42	NM_052940	exon2	c.196_203del	p.66_68del	.	.	111.0	13.0	155.0	0.0	.	29	.	0.117117	0	none	.	.	PASS	Atlas-Indel,Pindel
PPP1R15B	84919	hgsc.bcm.edu	hg19	1	204379087	204379089	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	CTA	CTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PPP1R15B	NM_032833	exon1	c.1452_1454del	p.484_485del	.	.	67.0	12.0	60.0	0.0	.	67	.	0.179104	0	none	.	.	PASS	Atlas-Indel,Pindel
ANKS4B	257629	hgsc.bcm.edu	hg19	16	21245180	21245180	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ANKS4B	NM_145865	exon1	c.121delT	p.Y41fs	.	.	144.0	47.0	141.0	0.0	.	43	.	0.326389	0	none	.	.	PASS	Atlas-Indel,Pindel
POLG	5428	hgsc.bcm.edu	hg19	15	89872222	89872222	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	POLG	NM_001126131	exon4	c.976delA	p.T326fs	.	.	149.0	19.0	164.0	0.0	.	75	.	0.127517	0	none	.	.	PASS	Atlas-Indel,Pindel
OR6K6	128371	hgsc.bcm.edu	hg19	1	158724869	158724869	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	OR6K6	NM_001005184	exon1	c.263delA	p.Y88fs	.	.	151.0	16.0	150.0	0.0	.	81	.	0.10596	0	none	.	.	PASS	Atlas-Indel,Pindel
CLTC	1213	hgsc.bcm.edu	hg19	17	57760151	57760152	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CLTC	NM_004859	exon23	c.3761_3762del	p.1254_1254del	.	.	90.0	21.0	68.0	0.0	.	124	.	0.233333	0	none	.	.	PASS	Atlas-Indel,Pindel
RNASEH2C	84153	hgsc.bcm.edu	hg19	11	65487867	65487867	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RNASEH2C	NM_032193	exon2	c.195delC	p.G65fs	.	.	76.0	16.0	67.0	0.0	.	3	.	0.210526	0	none	.	.	PASS	Atlas-Indel,Pindel
RNF213	57674	hgsc.bcm.edu	hg19	17	78321624	78321624	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RNF213	NM_001256071	exon29	c.9488delT	p.I3163fs	.	.	180.0	48.0	153.0	0.0	.	766	.	0.266667	0	none	.	.	PASS	Atlas-Indel,Pindel