Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PEX10	5192	hgsc.bcm.edu	hg19	1	2341814	2341814	+	Silent	SNP	A	A	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PEX10	NM_002617	exon2	c.T189G	p.L63L	ACCTGCAAGTGTG	.	61.0	25.0	47.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
KIF1B	23095	hgsc.bcm.edu	hg19	1	10431203	10431203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KIF1B	NM_015074	exon43	c.C4691T	p.S1564F	AGTTGTCTGATAT	.	180.0	45.0	101.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
DRAXIN	374946	hgsc.bcm.edu	hg19	1	11775243	11775243	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_198545	exon6	c.C915T	p.F305F	ATGCTTCGATGAC	.	171.0	29.0	126.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CASP9	842	hgsc.bcm.edu	hg19	1	15844625	15844625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CASP9	NM_001229	exon2	c.C398T	p.S133F	CCTCCAGAACCAA	.	203.0	36.0	128.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
EIF4G3	8672	hgsc.bcm.edu	hg19	1	21188793	21188793	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	EIF4G3_ENST00000374937,NS,carcinoma,0,2	EIF4G3	NM_001198801	exon21	c.G2979C	p.E993D	AATTTTCTCCATC	.	83.0	6.0	82.0	0.0	.	300	.	.	.	none	.	.	PASS	Atlas-SNP
EIF4G3	8672	hgsc.bcm.edu	hg19	1	21226427	21226427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	EIF4G3	NM_001198802	exon14	c.G1612A	p.E538K	CCTCTTCAGCTTT	.	164.0	38.0	206.0	0.0	.	300	.	.	.	none	.	.	PASS	Atlas-SNP
CDC42	998	hgsc.bcm.edu	hg19	1	22413230	22413230	+	Silent	SNP	C	C	G	rs143448220	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CDC42	NM_001039802	exon6	c.C357G	p.L119L	TGATCTCAGAGAT	.	285.0	72.0	383.0	0.0	.	26	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
CDC42	998	hgsc.bcm.edu	hg19	1	22413329	22413329	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CDC42	NM_001039802	exon6	c.C456G	p.V152V	GGCTGTCAAGTAT	.	245.0	62.0	306.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
INPP5B	3633	hgsc.bcm.edu	hg19	1	38328025	38328025	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	INPP5B	NM_005540	exon24	c.C2704G	p.Q902E	ATTCTTGAGCCTT	.	131.0	19.0	134.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
INPP5B	3633	hgsc.bcm.edu	hg19	1	38338748	38338748	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	INPP5B	NM_005540	exon19	c.C2041T	p.L681L	GAACCAGAATGTC	.	188.0	31.0	207.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRF	5792	hgsc.bcm.edu	hg19	1	44063522	44063522	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PTPRF	NM_002840	exon12	c.C1917T	p.I639I	CGTTATCACCCAG	.	30.0	17.0	27.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC18	343099	hgsc.bcm.edu	hg19	1	93705376	93705376	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CCDC18	NM_206886	exon21	c.G2904C	p.L968F	GGAATTGAGAGAT	.	53.0	8.0	62.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
DDX20	11218	hgsc.bcm.edu	hg19	1	112309171	112309171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DDX20	NM_007204	exon11	c.G2125A	p.E709K	AATCCAGAGAAAT	.	123.0	38.0	85.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
POGZ	23126	hgsc.bcm.edu	hg19	1	151377387	151377387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	POGZ	NM_015100	exon19	c.C4124T	p.P1375L	TCTTCAGGAGATG	.	190.0	44.0	144.0	0.0	.	211	.	.	.	none	.	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152281276	152281276	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FLG	NM_002016	exon3	c.C6086G	p.S2029C	ACTGCAGATGAAG	.	1229.0	541.0	1055.0	0.0	.	900	.	.	.	none	.	.	PASS	Atlas-SNP
CHRNB2	1141	hgsc.bcm.edu	hg19	1	154544111	154544111	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	CHRNB2,NS,carcinoma,0,1	CHRNB2	NM_000748	exon5	c.C812A	p.S271X	GCATCTCAGTGCT	.	281.0	167.0	225.0	1.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
GON4L	54856	hgsc.bcm.edu	hg19	1	155723194	155723194	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	GON4L	NM_001037533	exon29	c.C5643G	p.S1881R	GGATTTGCTGTCA	.	270.0	13.0	244.0	0.0	.	392	.	.	.	none	.	.	PASS	Atlas-SNP
OR10Z1	128368	hgsc.bcm.edu	hg19	1	158576303	158576303	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OR10Z1	NM_001004478	exon1	c.C75T	p.L25L	GCAGCTCCTTCTC	.	239.0	34.0	171.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
OR6N1	128372	hgsc.bcm.edu	hg19	1	158735810	158735810	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OR6N1	NM_001005185	exon1	c.C663T	p.I221I	GCAGATGATCTGC	.	231.0	119.0	185.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
PYHIN1	149628	hgsc.bcm.edu	hg19	1	158943473	158943473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	PYHIN1,NS,carcinoma,0,1	PYHIN1	NM_152501	exon8	c.G1396A	p.A466T	TCGCCTGCAAACT	.	105.0	54.0	67.0	0.0	.	208	.	.	.	none	.	.	PASS	Atlas-SNP
POGK	57645	hgsc.bcm.edu	hg19	1	166818273	166818273	+	Missense_Mutation	SNP	C	C	A	rs202168363	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	POGK	NM_017542	exon5	c.C457A	p.R153S	GGCCTCCGTCTGC	.	174.0	7.0	131.0	0.0	.	54	.	.	.	alt	.	.	PASS	Atlas-SNP
FASLG	356	hgsc.bcm.edu	hg19	1	172634825	172634825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FASLG	NM_000639	exon4	c.C515T	p.S172F	TGCTTTCTGGAGT	.	139.0	11.0	81.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
OR2L8	391190	hgsc.bcm.edu	hg19	1	248112585	248112585	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OR2L8	NM_001001963	exon1	c.G426A	p.L142L	TGTGCTGATGATA	.	270.0	24.0	253.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32626579	32626579	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	BIRC6	NM_016252	exon8	c.C1306T	p.Q436X	GTACAACAGCTTA	.	106.0	38.0	111.0	0.0	.	838	.	.	.	none	.	.	PASS	Atlas-SNP
SOS1	6654	hgsc.bcm.edu	hg19	2	39281894	39281894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SOS1	NM_005633	exon5	c.C581T	p.S194F	GAGGTGGAAGGCT	.	166.0	68.0	213.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
ACTR2	10097	hgsc.bcm.edu	hg19	2	65492181	65492181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ACTR2	NM_001005386	exon9	c.G901A	p.E301K	AGATCTGAATTCT	.	176.0	70.0	169.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
FSIP2	401024	hgsc.bcm.edu	hg19	2	186678413	186678413	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	FSIP2_ENST00000343098,NS,carcinoma,0,2	FSIP2	NM_173651	exon18	c.A20236T	p.I6746L	AATTACATAAAAG	.	40.0	11.0	41.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
MSTN	2660	hgsc.bcm.edu	hg19	2	190922196	190922196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MSTN	NM_005259	exon3	c.G916A	p.A306T	AATTGGCCTTATA	.	69.0	34.0	60.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	hg19	2	241661280	241661280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KIF1A	NM_001244008	exon44	c.A4687G	p.T1563A	TGAATGTGTGCGT	.	11.0	8.0	32.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
SEMA3F	6405	hgsc.bcm.edu	hg19	3	50220896	50220896	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SEMA3F	NM_004186	exon12	c.G1132C	p.D378H	ATGGCTGATATTC	.	71.0	7.0	85.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA2D3	55799	hgsc.bcm.edu	hg19	3	54930840	54930840	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CACNA2D3	NM_018398	exon26	c.C2311A	p.R771R	TGGTACCGAAGAG	.	180.0	8.0	200.0	0.0	.	159	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC80	151887	hgsc.bcm.edu	hg19	3	112324296	112324296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CCDC80	NM_199511	exon8	c.C2821T	p.H941Y	TCTCATGATGACG	.	99.0	27.0	100.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	hg19	3	124103778	124103778	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KALRN	NM_003947	exon11	c.G1851C	p.K617N	CTACAAGGCAGCT	.	84.0	38.0	96.0	0.0	.	556	.	.	.	none	.	.	PASS	Atlas-SNP
MME	4311	hgsc.bcm.edu	hg19	3	154860114	154860114	+	Missense_Mutation	SNP	C	C	A	rs201459271	bycluster;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MME	NM_007287	exon12	c.C1183A	p.R395S	GCTTTCCGCAAGG	.	102.0	9.0	76.0	0.0	.	133	.	.	.	alt	.	.	PASS	Atlas-SNP
TTC14	151613	hgsc.bcm.edu	hg19	3	180324303	180324303	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TTC14	NM_001042601	exon9	c.G1084C	p.E362Q	GCAATAGAAGATT	.	214.0	119.0	111.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC39	339829	hgsc.bcm.edu	hg19	3	180337752	180337752	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CCDC39	NM_181426	exon15	c.C2005G	p.Q669E	TTTCTTGAGCAGC	.	55.0	9.0	22.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
FGFR3	2261	hgsc.bcm.edu	hg19	4	1806099	1806099	+	Missense_Mutation	SNP	A	A	G	rs121913485	bycluster	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	FGFR3_ENST00000340107,bladder,carcinoma,0,407	FGFR3	NM_001163213	exon9	c.A1124G	p.Y375C	GTGTGTATGCAGG	.	201.0	172.0	304.0	1.0	.	3320	.	.	.	weak	.	.	PASS	Atlas-SNP
FGFR3	2261	hgsc.bcm.edu	hg19	4	1807891	1807891	+	Missense_Mutation	SNP	G	G	C	rs28928868	bycluster	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	FGFR3_ENST00000340107,colon,carcinoma,0,2	FGFR3	NM_001163213	exon14	c.G1956C	p.K652N	CAAGAAGACGACC	.	18.0	16.0	50.0	1.0	.	3320	.	.	.	weak	.	.	PASS	Atlas-SNP
HOPX	84525	hgsc.bcm.edu	hg19	4	57514941	57514941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HOPX	NM_032495	exon4	c.C221T	p.A74V	CACTTTGCCAGGC	.	145.0	61.0	172.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
PLK4	10733	hgsc.bcm.edu	hg19	4	128813651	128813651	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PLK4	NM_014264	exon10	c.G2170C	p.E724Q	GATTTTGAGGTTT	.	53.0	7.0	94.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
SLC6A19	340024	hgsc.bcm.edu	hg19	5	1216926	1216926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SLC6A19	NM_001003841	exon8	c.G1039T	p.G347W	ATCAACGGGTTCG	.	249.0	10.0	217.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	hg19	5	79027353	79027353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMYA5	NM_153610	exon2	c.C2765T	p.S922F	ATAGATCTCTAAA	.	94.0	51.0	114.0	0.0	.	643	.	.	.	none	.	.	PASS	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	hg19	5	79031337	79031337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMYA5	NM_153610	exon2	c.G6749A	p.R2250K	AACCCAGAGGTAC	.	140.0	75.0	176.0	0.0	.	643	.	.	.	none	.	.	PASS	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	hg19	5	79031882	79031882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	CMYA5_ENST00000446378,NS,carcinoma,0,2	CMYA5	NM_153610	exon2	c.G7294C	p.E2432Q	AAGAAAGAAATGC	.	58.0	24.0	66.0	0.0	.	643	.	.	.	none	.	.	PASS	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	hg19	5	79032579	79032579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMYA5	NM_153610	exon2	c.G7991A	p.R2664K	CAAGCAGAGATAT	.	50.0	25.0	68.0	0.0	.	643	.	.	.	none	.	.	PASS	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	hg19	5	82817031	82817031	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	VCAN	NM_004385	exon7	c.C2906G	p.S969C	TAGACTCTTCCCA	.	105.0	9.0	116.0	0.0	.	498	.	.	.	none	.	.	PASS	Atlas-SNP
GRIA1	2890	hgsc.bcm.edu	hg19	5	153078520	153078520	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	GRIA1	NM_001258021	exon10	c.G1369C	p.A457P	GAGATTGCCAAGC	.	82.0	19.0	135.0	0.0	.	321	.	.	.	none	.	.	PASS	Atlas-SNP
SGCD	6444	hgsc.bcm.edu	hg19	5	156186311	156186311	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	SGCD,NS,carcinoma,0,1	SGCD	NM_000337	exon9	c.C783T	p.F261F	GGTCTTCGAGATC	.	131.0	44.0	171.0	1.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152557320	152557320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SYNE1	NM_182961	exon110	c.G20318A	p.G6773E	CACTCTCCAAGTT	.	81.0	58.0	159.0	0.0	.	3227	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152560730	152560730	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SYNE1	NM_182961	exon108	c.C20005G	p.Q6669E	AAGCCTGAGCCAT	.	61.0	47.0	101.0	0.0	.	3227	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152730280	152730280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SYNE1	NM_033071	exon44	c.G6484A	p.E2162K	TCAGCTCAGATAA	.	55.0	45.0	99.0	0.0	.	3227	.	.	.	none	.	.	PASS	Atlas-SNP
MLLT4	4301	hgsc.bcm.edu	hg19	6	168347543	168347543	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MLLT4	NM_001040000	exon26	c.A3494C	p.K1165T	TGATGAAAAATAG	.	77.0	60.0	160.0	0.0	.	351	.	.	.	none	.	.	PASS	Atlas-SNP
SBDS	51119	hgsc.bcm.edu	hg19	7	66456129	66456129	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SBDS	NM_016038	exon4	c.G619C	p.E207Q	CGATTTCTAACTG	.	84.0	33.0	65.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	hg19	7	94035021	94035021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	COL1A2	NM_000089	exon11	c.G523A	p.G175S	CTTCCTGGCTTCA	.	264.0	56.0	204.0	0.0	.	240	.	.	.	none	.	.	PASS	Atlas-SNP
PCM1	5108	hgsc.bcm.edu	hg19	8	17885162	17885162	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PCM1	NM_006197	exon39	c.G6066C	p.Q2022H	AGCCCAGAGTATA	.	62.0	10.0	63.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
EBF2	64641	hgsc.bcm.edu	hg19	8	25890622	25890622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	EBF2_ENST00000520164,NS,neuroblastoma,0,2	EBF2	NM_022659	exon6	c.C530G	p.S177W	GGGTCCGATGGAG	.	155.0	20.0	144.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
MATN2	4147	hgsc.bcm.edu	hg19	8	99019720	99019720	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MATN2	NM_002380	exon10	c.C1464T	p.C488C	TTACTGCCTGCTG	.	72.0	30.0	85.0	0.0	.	165	.	.	.	none	.	.	PASS	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	133945814	133945814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TG	NM_003235	exon24	c.G4825A	p.E1609K	TGCACAGAGGACG	.	113.0	12.0	138.0	0.0	.	416	.	.	.	none	.	.	PASS	Atlas-SNP
BAI1	575	hgsc.bcm.edu	hg19	8	143603450	143603450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	BAI1	NM_001702	exon20	c.G3149A	p.R1050H	TCATCCGCAAGCG	.	78.0	30.0	54.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
C5	727	hgsc.bcm.edu	hg19	9	123783919	123783919	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	C5	NM_001735	exon11	c.G1170C	p.L390L	TGCATTCAGTGTT	.	61.0	6.0	141.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
KCNT1	57582	hgsc.bcm.edu	hg19	9	138594186	138594186	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KCNT1	NM_001272003	exon1	c.G82C	p.E28Q	ACCTTCGAGTTTG	.	19.0	9.0	61.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
FAM171A1	221061	hgsc.bcm.edu	hg19	10	15256140	15256140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	FAM171A1_ENST00000378116,right_upper_lobe,carcinoma,0,2	FAM171A1	NM_001010924	exon8	c.G1447A	p.D483N	AGTCATCATTGCC	.	244.0	27.0	177.0	0.0	.	252	.	.	.	none	.	.	PASS	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26446363	26446363	+	Missense_Mutation	SNP	G	G	T	rs142974032	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MYO3A	NM_017433	exon26	c.G2918T	p.R973L	AGCTTCGGTACAC	.	181.0	9.0	97.0	0.0	.	371	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
C10orf10	11067	hgsc.bcm.edu	hg19	10	45472882	45472882	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	C10orf10	NM_007021	exon2	c.C597T	p.L199L	TGTTCTGAGGACA	.	100.0	24.0	153.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61830133	61830133	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ANK3	NM_020987	exon37	c.C10506T	p.F3502F	TGTGAAGAACTGG	.	65.0	16.0	97.0	0.0	.	703	.	.	.	none	.	.	PASS	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61830689	61830689	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ANK3	NM_020987	exon37	c.C9950G	p.S3317X	TCGCTTGAATCAC	.	157.0	41.0	193.0	0.0	.	703	.	.	.	none	.	.	PASS	Atlas-SNP
CHST3	9469	hgsc.bcm.edu	hg19	10	73765714	73765714	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	CHST3,NS,carcinoma,0,1	CHST3	NM_004273	exon2	c.C114G	p.I38M	CTTCATCGAAAAG	.	147.0	9.0	175.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
CDHR1	92211	hgsc.bcm.edu	hg19	10	85956359	85956359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CDHR1	NM_001171971	exon3	c.G250A	p.D84N	TCTGTTGACCCCA	.	109.0	66.0	155.0	0.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
TRUB1	142940	hgsc.bcm.edu	hg19	10	116734920	116734920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TRUB1	NM_139169	exon8	c.A832G	p.T278A	ACCCGAACCAAAC	.	112.0	24.0	120.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	hg19	10	129910532	129910532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MKI67	NM_002417	exon9	c.G1834A	p.E612K	GAACCTCTGTCTG	.	84.0	11.0	159.0	0.0	.	363	.	.	.	none	.	.	PASS	Atlas-SNP
IPO7	10527	hgsc.bcm.edu	hg19	11	9451343	9451343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	IPO7	NM_006391	exon15	c.G1714A	p.E572K	AGTGAAGAAGTTA	.	26.0	12.0	51.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
COPB1	1315	hgsc.bcm.edu	hg19	11	14501121	14501121	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	COPB1	NM_001144062	exon11	c.C1352G	p.S451C	TTGACAGATTTAA	.	100.0	73.0	134.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
RAG2	5897	hgsc.bcm.edu	hg19	11	36614896	36614896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	RAG2	NM_001243785	exon3	c.G823A	p.G275S	AGCCACCAACAAT	.	44.0	22.0	98.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
OR9G9	504191	hgsc.bcm.edu	hg19	11	56468116	56468116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001013358	exon1	c.A253G	p.I85V	ACCTGCATCTCTG	.	174.0	22.0	191.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
OR4D11	219986	hgsc.bcm.edu	hg19	11	59271133	59271133	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OR4D11	NM_001004706	exon1	c.C85G	p.L29V	TTGTTTCTTTTTT	.	99.0	5.0	181.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
NARS2	79731	hgsc.bcm.edu	hg19	11	78154732	78154732	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	NARS2	NM_024678	exon12	c.C1237G	p.H413D	AGAAATGGTATCG	.	73.0	4.0	81.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
CREBZF	58487	hgsc.bcm.edu	hg19	11	85375684	85375684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CREBZF	NM_001039618	exon1	c.C236T	p.S79F	TCGGGGGAGGGCG	.	78.0	41.0	151.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
YAP1	10413	hgsc.bcm.edu	hg19	11	102080284	102080284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	YAP1	NM_001130145	exon6	c.C1021G	p.P341A	AATTCTCCAAAAT	.	114.0	62.0	139.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
YAP1	10413	hgsc.bcm.edu	hg19	11	102098224	102098224	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	YAP1	NM_001130145	exon8	c.G1188C	p.E396D	AGATGAGAGTACA	.	50.0	12.0	60.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
HTR3A	3359	hgsc.bcm.edu	hg19	11	113856896	113856896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HTR3A	NM_000869	exon6	c.A722G	p.Y241C	AGTTCTATGTGAG	.	132.0	82.0	217.0	1.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
VWF	7450	hgsc.bcm.edu	hg19	12	6167128	6167128	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	VWF	NM_000552	exon14	c.C1616G	p.S539C	AGCCCAGAGGGGG	.	105.0	31.0	176.0	0.0	.	338	.	.	.	none	.	.	PASS	Atlas-SNP
CAPRIN2	65981	hgsc.bcm.edu	hg19	12	30906661	30906661	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	CAPRIN2,rectum,carcinoma,0,2	CAPRIN2	NM_023925	exon1	c.G37C	p.E13Q	TGAGCTCGAAACC	.	169.0	15.0	179.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
SLC2A13	114134	hgsc.bcm.edu	hg19	12	40422219	40422219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SLC2A13	NM_052885	exon3	c.G809A	p.G270E	GTCTGTCCTTTCT	.	184.0	39.0	166.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
DDX23	9416	hgsc.bcm.edu	hg19	12	49231830	49231830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DDX23	NM_004818	exon6	c.G514A	p.E172K	GAGCTTCAGCCTC	.	232.0	92.0	241.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
SPATS2	65244	hgsc.bcm.edu	hg19	12	49916614	49916614	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SPATS2	NM_023071	exon12	c.G1089C	p.K363N	AAAGAAGAGCATT	.	80.0	37.0	65.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
DIP2B	57609	hgsc.bcm.edu	hg19	12	51019819	51019819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	DIP2B,NS,carcinoma,0,1	DIP2B	NM_173602	exon2	c.C161A	p.P54Q	ACAGCCCGCAGAC	.	142.0	8.0	137.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
RARG	5916	hgsc.bcm.edu	hg19	12	53607847	53607847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	RARG	NM_000966	exon7	c.T809C	p.I270T	ACCAGGATATCTA	.	365.0	139.0	412.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
DPY19L2	283417	hgsc.bcm.edu	hg19	12	64061939	64061939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DPY19L2	NM_173812	exon1	c.C235T	p.L79F	GGCCGAGAAGAAA	.	133.0	22.0	167.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
LLPH	84298	hgsc.bcm.edu	hg19	12	66522754	66522754	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	LLPH	NM_032338	exon2	c.C133T	p.Q45X	TCTCTTGAACATC	.	228.0	34.0	175.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
AMDHD1	144193	hgsc.bcm.edu	hg19	12	96354342	96354342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	AMDHD1,NS,carcinoma,0,1	AMDHD1	NM_152435	exon5	c.G754C	p.D252H	GGAAAAGATATAG	.	178.0	65.0	157.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
UTP14C	9724	hgsc.bcm.edu	hg19	13	52603705	52603705	+	Silent	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	UTP14C	NM_021645	exon2	c.G765C	p.V255V	AGTCGTGAAGAAA	.	83.0	5.0	77.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
OLFM4	10562	hgsc.bcm.edu	hg19	13	53624805	53624805	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OLFM4	NM_006418	exon5	c.G1432C	p.V478L	GAAAAAGTGCAGA	.	129.0	18.0	84.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
PCDH20	64881	hgsc.bcm.edu	hg19	13	61986466	61986466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PCDH20	NM_022843	exon2	c.G1766A	p.G589E	AGAATTCCTGTGA	.	121.0	24.0	128.0	0.0	.	265	.	.	.	none	.	.	PASS	Atlas-SNP
PCDH20	64881	hgsc.bcm.edu	hg19	13	61986467	61986467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PCDH20	NM_022843	exon2	c.G1765A	p.G589R	GAATTCCTGTGAC	.	121.0	25.0	128.0	0.0	.	265	.	.	.	none	.	.	PASS	Atlas-SNP
CIDEB	27141	hgsc.bcm.edu	hg19	14	24775203	24775203	+	Silent	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CIDEB	NM_014430	exon6	c.C477G	p.L159L	AGAGTAGAGCCCG	.	104.0	24.0	127.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45642339	45642339	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FANCM	NM_020937	exon13	c.C2242G	p.Q748E	ACACATCAAGTTG	.	88.0	55.0	108.0	0.0	.	225	.	.	.	none	.	.	PASS	Atlas-SNP
EML5	161436	hgsc.bcm.edu	hg19	14	89161727	89161727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	EML5	NM_183387	exon16	c.G2416A	p.G806R	TCTCTCCTTTCTT	.	77.0	17.0	44.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
MARK3	4140	hgsc.bcm.edu	hg19	14	103932113	103932113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MARK3	NM_001128919	exon8	c.G760C	p.D254H	CCCTTTGATGGGC	.	56.0	9.0	94.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105409722	105409722	+	Silent	SNP	G	G	A	rs372712364	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	AHNAK2_ENST00000333244,NS,carcinoma,0,1	AHNAK2	NM_138420	exon7	c.C12066T	p.S4022S	GTCAGCGGAAGGG	.	126.0	88.0	333.0	0.0	.	719	.	.	.	alt	.	.	PASS	Atlas-SNP
ZFYVE19	84936	hgsc.bcm.edu	hg19	15	41099974	41099974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZFYVE19	NM_001077268	exon1	c.G187A	p.D63N	CGGCGTGATCTCA	.	30.0	18.0	43.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
INO80	54617	hgsc.bcm.edu	hg19	15	41384347	41384347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	INO80	NM_017553	exon5	c.G415T	p.D139Y	GAGAATCAGCCTC	.	42.0	19.0	65.0	0.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	hg19	15	86269660	86269660	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	AKAP13	NM_006738	exon27	c.C6777G	p.L2259L	TCTTCTCACTGAC	.	130.0	31.0	143.0	0.0	.	394	.	.	.	none	.	.	PASS	Atlas-SNP
ABAT	18	hgsc.bcm.edu	hg19	16	8844348	8844348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ABAT	NM_001127448	exon5	c.G268T	p.G90C	GTGGACGGCAACC	.	134.0	7.0	219.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF689	115509	hgsc.bcm.edu	hg19	16	30616559	30616559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZNF689	NM_138447	exon3	c.T529C	p.Y177H	AAGGGTAAGGCTT	.	70.0	19.0	153.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30749163	30749163	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SRCAP	NM_006662	exon34	c.C7802G	p.S2601C	ACCTTTCTCTCAC	.	84.0	24.0	136.0	0.0	.	298	.	.	.	none	.	.	PASS	Atlas-SNP
CMTM2	146225	hgsc.bcm.edu	hg19	16	66614056	66614056	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMTM2	NM_144673	exon2	c.G413C	p.R138T	TTCATAGATACAT	.	114.0	8.0	164.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
AARS	16	hgsc.bcm.edu	hg19	16	70316659	70316659	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	AARS	NM_001605	exon2	c.C8G	p.S3C	AGAGTAGAGTCCA	.	141.0	76.0	202.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
PRPF8	10594	hgsc.bcm.edu	hg19	17	1586885	1586885	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PRPF8	NM_006445	exon3	c.C211G	p.R71G	GGTCTCGAATGAT	.	79.0	5.0	138.0	0.0	.	169	.	.	.	none	.	.	PASS	Atlas-SNP
ZZEF1	23140	hgsc.bcm.edu	hg19	17	3926086	3926086	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZZEF1	NM_015113	exon44	c.C7129G	p.Q2377E	CGGTCTGAAGGAA	.	40.0	12.0	79.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
IKZF3	22806	hgsc.bcm.edu	hg19	17	37949078	37949078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	IKZF3	NM_012481	exon4	c.G272A	p.R91K	TATTCTCTTGAAT	.	88.0	12.0	86.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
HAP1	9001	hgsc.bcm.edu	hg19	17	39887800	39887800	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HAP1	NM_001079870	exon6	c.C1038T	p.L346L	AGTGTCGAGTTGA	.	103.0	66.0	151.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
SKAP1	8631	hgsc.bcm.edu	hg19	17	46239837	46239837	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	SKAP1,bladder,carcinoma,0,1	SKAP1	NM_003726	exon11	c.G972C	p.L324L	CTTGCTCAGAATA	.	70.0	6.0	58.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
KIF19	124602	hgsc.bcm.edu	hg19	17	72338804	72338804	+	Missense_Mutation	SNP	C	C	G	rs368432623	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KIF19	NM_153209	exon4	c.C267G	p.I89M	CCTCATCGAGGGC	.	81.0	41.0	113.0	0.0	.	102	.	.	.	alt	.	.	PASS	Atlas-SNP
AZI1	22994	hgsc.bcm.edu	hg19	17	79165116	79165116	+	Missense_Mutation	SNP	C	C	A	rs138682079	bycluster;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	AZI1	NM_014984	exon22	c.G2642T	p.R881L	TGTTCCCGGTTCA	.	130.0	8.0	205.0	0.0	.	145	.	.	.	alt	C|1.000;T|0.000	.	PASS	Atlas-SNP
TAF4B	6875	hgsc.bcm.edu	hg19	18	23866009	23866009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TAF4B	NM_005640	exon7	c.C1136T	p.S379L	AAAAGTCAATTAT	.	82.0	64.0	146.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
MED16	10025	hgsc.bcm.edu	hg19	19	879943	879943	+	Missense_Mutation	SNP	G	G	C	rs76403059	bycluster	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	MED16,colon,carcinoma,0,1	MED16	NM_005481	exon8	c.C1347G	p.H449Q	CTTCCCGTGGCTG	.	25.0	3.0	36.0	1.0	.	61	.	.	.	weak	.	.	PASS	Atlas-SNP
NFIX	4784	hgsc.bcm.edu	hg19	19	13201202	13201202	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	NFIX	NM_001271043	exon10	c.C1516G	p.Q506E	CAGTCTCAGGTAG	.	114.0	45.0	152.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
NCCRP1	342897	hgsc.bcm.edu	hg19	19	39691364	39691364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	NCCRP1	NM_001001414	exon6	c.G796A	p.D266N	GTGACCGACTCCT	.	303.0	60.0	385.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
C19orf47	126526	hgsc.bcm.edu	hg19	19	40832303	40832303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	C19orf47	NM_001256440	exon7	c.A641G	p.N214S	GGCATGTTGATGA	.	55.0	26.0	84.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
KLK10	5655	hgsc.bcm.edu	hg19	19	51518766	51518766	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KLK10	NM_145888	exon5	c.C585A	p.I195I	GCTCAGGATAGTG	.	385.0	66.0	468.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF347	84671	hgsc.bcm.edu	hg19	19	53643875	53643875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZNF347	NM_001172675	exon5	c.C2209A	p.P737T	TGTAAGGTTTTTT	.	172.0	28.0	232.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
GALP	85569	hgsc.bcm.edu	hg19	19	56694579	56694579	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	GALP	NM_033106	exon5	c.G293C	p.G98A	AGATTGGAGGTAA	.	96.0	32.0	130.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
USP29	57663	hgsc.bcm.edu	hg19	19	57641187	57641187	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	USP29	NM_020903	exon4	c.G1144C	p.D382H	TGTTTAGACCAGC	.	106.0	42.0	102.0	0.0	.	186	.	.	.	none	.	.	PASS	Atlas-SNP
CHD6	84181	hgsc.bcm.edu	hg19	20	40033767	40033767	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CHD6	NM_032221	exon37	c.C7614T	p.L2538L	TGGACTGAGGAGT	.	156.0	23.0	170.0	0.0	.	312	.	.	.	none	.	.	PASS	Atlas-SNP
PTPN1	5770	hgsc.bcm.edu	hg19	20	49195155	49195155	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PTPN1	NM_002827	exon6	c.T691G	p.C231G	GATACCTGCCTCT	.	56.0	18.0	77.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
SERPIND1	3053	hgsc.bcm.edu	hg19	22	21140297	21140297	+	Missense_Mutation	SNP	G	G	A	rs368023291		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SERPIND1	NM_000185	exon4	c.G1169A	p.R390Q	GAACTCGAGAAGT	.	187.0	20.0	249.0	0.0	.	92	.	.	.	weak	.	.	PASS	Atlas-SNP
SERPIND1	3053	hgsc.bcm.edu	hg19	22	21140328	21140328	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SERPIND1	NM_000185	exon4	c.G1200A	p.E400E	GCTGGAGAAGAAC	.	199.0	24.0	254.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
MCM5	4174	hgsc.bcm.edu	hg19	22	35806777	35806777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MCM5	NM_006739	exon7	c.A793G	p.I265V	GTTACCATCATGG	.	176.0	54.0	209.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
MYH9	4627	hgsc.bcm.edu	hg19	22	36696256	36696256	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MYH9	NM_002473	exon23	c.G2893C	p.E965Q	CCTTCTCCAGCTG	.	113.0	50.0	131.0	0.0	.	225	.	.	.	none	.	.	PASS	Atlas-SNP
MAOB	4129	hgsc.bcm.edu	hg19	X	43655117	43655117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MAOB	NM_000898	exon7	c.G637A	p.G213R	CAGATCCGCCCAC	.	125.0	46.0	138.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
KDM6A	7403	hgsc.bcm.edu	hg19	X	44870205	44870205	+	Splice_Site	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KDM6A	NM_021140	exon5	c.385-1G>C	.	TTTACAGAATGCT	.	67.0	30.0	60.0	0.0	.	274	.	.	.	none	.	.	PASS	Atlas-SNP
ERCC6L	54821	hgsc.bcm.edu	hg19	X	71426809	71426809	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ERCC6L	NM_017669	exon2	c.C1808G	p.S603X	ATTAATGAGTCCT	.	175.0	12.0	122.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
PHKA1	5255	hgsc.bcm.edu	hg19	X	71886083	71886083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PHKA1	NM_001172436	exon8	c.C782T	p.S261L	ACCACTGAGAGTA	.	92.0	48.0	60.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
STAG2	10735	hgsc.bcm.edu	hg19	X	123202456	123202456	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	STAG2	NM_001042749	exon24	c.C2308T	p.Q770X	TTTTGTCAGATAT	.	183.0	57.0	122.0	0.0	.	309	.	.	.	none	.	.	PASS	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	hg19	X	123680889	123680889	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001163278	exon15	c.A2486T	p.Y829F	CTTATATAACAGT	.	201.0	112.0	132.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MPRIP	23164	hgsc.bcm.edu	hg19	17	17046031	17046031	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MPRIP	NM_015134	exon8	c.986delG	p.S329fs	.	.	55.0	16.0	106.0	0.0	.	87	.	0.290909	0	none	.	.	PASS	Atlas-INDEL
KANSL1	284058	hgsc.bcm.edu	hg19	17	44248974	44248974	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001193466	exon2	c.537delA	p.G179fs	.	.	277.0	119.0	304.0	0.0	.	.	.	0.429603	0	none	.	.	PASS	Atlas-INDEL
KDM6A	7403	hgsc.bcm.edu	hg19	X	44969446	44969447	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KDM6A	NM_021140	exon28	c.4127_4128del	p.1376_1376del	.	.	106.0	36.0	79.0	0.0	.	274	.	0.339623	0	none	.	.	PASS	Atlas-INDEL
BMP8A	353500	hgsc.bcm.edu	hg19	1	39991443	39991443	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	BMP8A	NM_181809	exon7	c.1181delT	p.M394fs	.	.	171.0	35.0	220.0	0.0	.	24	.	0.204678	0	none	.	.	PASS	Atlas-INDEL
OXSM	54995	hgsc.bcm.edu	hg19	3	25833175	25833175	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OXSM	NM_001145391	exon2	c.663delA	p.R221fs	.	.	178.0	86.0	176.0	0.0	.	54	.	0.483146	0	none	.	.	PASS	Atlas-INDEL
TXNIP	10628	hgsc.bcm.edu	hg19	1	145440057	145440059	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TXNIP	NM_006472	exon4	c.490_492del	p.164_164del	.	.	684.0	383.0	453.0	0.0	.	51	.	0.559942	0	none	.	.	PASS	Atlas-INDEL
CNGA3	1261	hgsc.bcm.edu	hg19	2	99012521	99012522	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CNGA3	NM_001298	exon8	c.888_889insGT	p.N296fs	.	.	92.0	20.0	99.0	0.0	.	118	.	0.217391	0	none	.	.	PASS	Atlas-INDEL