Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ZNF436	80818	hgsc.bcm.edu	hg19	1	23693623	23693623	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ZNF436	NM_001077195	exon3	c.C72T	p.T24T	TTCCCGGGTGAGA	.	131.0	47.0	108.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
KLF17	128209	hgsc.bcm.edu	hg19	1	44595405	44595405	+	Silent	SNP	C	C	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	KLF17	NM_173484	exon2	c.C462G	p.P154P	GATGCCCCCCAAT	.	43.0	16.0	35.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC8C	84230	hgsc.bcm.edu	hg19	1	90179946	90179946	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	LRRC8C	NM_032270	exon3	c.A1817C	p.H606P	TTCCTCATGCTGT	.	121.0	40.0	80.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
EVI5	7813	hgsc.bcm.edu	hg19	1	93073196	93073196	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	EVI5	NM_005665	exon15	c.A1868T	p.K623I	AGTCCTTTGTTCT	.	88.0	45.0	47.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186082053	186082053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	HMCN1	NM_031935	exon72	c.A11099G	p.K3700R	CAGGAAAGACTAC	.	69.0	24.0	46.0	0.0	.	797	.	.	.	none	.	.	PASS	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	hg19	2	15519770	15519770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	NBAS	NM_015909	exon30	c.C3546A	p.F1182L	AGAATTGAAGTAC	.	150.0	61.0	110.0	0.0	.	246	.	.	.	none	.	.	PASS	Atlas-SNP
PNPT1	87178	hgsc.bcm.edu	hg19	2	55863462	55863462	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PNPT1	NM_033109	exon28	c.G2262A	p.S754S	AGCTGGCGACTGA	.	96.0	4.0	95.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
RIF1	55183	hgsc.bcm.edu	hg19	2	152320162	152320162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	RIF1	NM_018151	exon30	c.A4128T	p.K1376N	GGAGAAAAATGTA	.	25.0	11.0	26.0	0.0	.	244	.	.	.	none	.	.	PASS	Atlas-SNP
PLA2R1	22925	hgsc.bcm.edu	hg19	2	160825863	160825863	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PLA2R1	NM_001195641	exon19	c.G2668C	p.D890H	TTCCATCTCTCCA	.	59.0	15.0	57.0	0.0	.	153	.	.	.	none	.	.	PASS	Atlas-SNP
TTLL4	9654	hgsc.bcm.edu	hg19	2	219611762	219611762	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	TTLL4	NM_014640	exon9	c.A2011C	p.K671Q	GGGAGGAAGGACC	.	197.0	73.0	109.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC108	255101	hgsc.bcm.edu	hg19	2	219878079	219878079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CCDC108	NM_194302	exon24	c.G3859A	p.G1287S	TCACACCTATGAA	.	179.0	76.0	114.0	0.0	.	208	.	.	.	none	.	.	PASS	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220349151	220349151	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	SPEG	NM_005876	exon30	c.C6966T	p.S2322S	CAGTAGCAGCATC	.	52.0	15.0	44.0	0.0	.	272	.	.	.	none	.	.	PASS	Atlas-SNP
STK11IP	114790	hgsc.bcm.edu	hg19	2	220470428	220470428	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	STK11IP	NM_052902	exon8	c.G750T	p.L250L	GATACTGCGAGGC	.	43.0	4.0	27.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
IL17RC	84818	hgsc.bcm.edu	hg19	3	9971714	9971714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	IL17RC	NM_153461	exon14	c.T1372C	p.S458P	CCAGACTCCCTGG	.	116.0	44.0	86.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
DZIP1L	199221	hgsc.bcm.edu	hg19	3	137813760	137813760	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	DZIP1L	NM_001170538	exon5	c.T652A	p.W218R	GGGTCCACTTTAG	.	166.0	58.0	103.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
ARAP2	116984	hgsc.bcm.edu	hg19	4	36069579	36069579	+	Missense_Mutation	SNP	G	G	A	rs377015356		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	ARAP2,NS,carcinoma,0,1	ARAP2	NM_015230	exon33	c.C5065T	p.R1689W	TTGACCGTTGTAG	.	79.0	33.0	76.0	0.0	.	210	.	.	.	weak	.	.	PASS	Atlas-SNP
GABRB1	2560	hgsc.bcm.edu	hg19	4	47427723	47427723	+	Silent	SNP	C	C	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	GABRB1	NM_000812	exon9	c.C1113G	p.T371T	CAGCACCCTGGAA	.	128.0	50.0	77.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
PRR16	51334	hgsc.bcm.edu	hg19	5	120021685	120021685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PRR16	NM_016644	exon3	c.C127A	p.Q43K	GACCTACAGCTGG	.	87.0	37.0	87.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
CCNI2	645121	hgsc.bcm.edu	hg19	5	132088594	132088594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CCNI2	NM_001039780	exon6	c.G1042A	p.V348I	GAACTTGTAATGC	.	98.0	38.0	78.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
FAM13B	51306	hgsc.bcm.edu	hg19	5	137354741	137354741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	FAM13B	NM_001101800	exon3	c.A60G	p.I20M	TCCAAATATTTTG	.	256.0	120.0	188.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
FAM217A	222826	hgsc.bcm.edu	hg19	6	4069042	4069042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	.	NM_173563	exon7	c.T1415C	p.L472P	CGGTAAAGTTTCT	.	97.0	35.0	70.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MYLIP	29116	hgsc.bcm.edu	hg19	6	16143330	16143330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	MYLIP	NM_013262	exon4	c.A544G	p.M182V	TCGGCAATGGAAA	.	158.0	77.0	102.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
SLC17A1	6568	hgsc.bcm.edu	hg19	6	25811999	25811999	+	Splice_Site	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	SLC17A1	NM_005074	exon10	c.898-1G>A	.	CCCATTCTGAAGA	.	73.0	26.0	61.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
GCLC	2729	hgsc.bcm.edu	hg19	6	53370243	53370243	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	GCLC	NM_001498	exon12	c.C1342G	p.L448V	TGGTGAGCAGTAC	.	178.0	72.0	137.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
SMIM8	57150	hgsc.bcm.edu	hg19	6	88046811	88046811	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	.	NM_001042493	exon3	c.A62C	p.Q21P	AGTTTCAAAGCCC	.	64.0	31.0	41.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116411675	116411675	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	MET	NM_001127500	exon13	c.T2908G	p.F970V	GGGTTTTTCCTGT	.	97.0	15.0	52.0	0.0	.	412	.	.	.	none	.	.	PASS	Atlas-SNP
MTUS1	57509	hgsc.bcm.edu	hg19	8	17579357	17579357	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	MTUS1	NM_001001931	exon1	c.A54T	p.K18N	AAAGATTTTTGAA	.	74.0	35.0	57.0	0.0	.	144	.	.	.	none	.	.	PASS	Atlas-SNP
LPL	4023	hgsc.bcm.edu	hg19	8	19811710	19811710	+	Silent	SNP	C	C	T	rs118204076	alternate_allele	TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	LPL	NM_000237	exon5	c.C621T	p.D207D	TGTAGACGTCTTA	.	155.0	73.0	109.0	0.0	.	78	.	.	.	alt	.	.	PASS	Atlas-SNP
PPP2R2A	5520	hgsc.bcm.edu	hg19	8	26211991	26211991	+	Missense_Mutation	SNP	T	T	C	rs373174942		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PPP2R2A	NM_001177591	exon4	c.T218C	p.I73T	ACAAAATCCAGTC	.	38.0	12.0	35.0	0.0	.	44	.	.	.	weak	.	.	PASS	Atlas-SNP
ASPH	444	hgsc.bcm.edu	hg19	8	62460750	62460750	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	ASPH,NS,carcinoma,0,2	ASPH	NM_004318	exon21	c.G1644A	p.E548E	CCCAAGCTCATAC	.	134.0	54.0	102.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
WWP1	11059	hgsc.bcm.edu	hg19	8	87460401	87460401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	WWP1,NS,carcinoma,0,1	WWP1	NM_007013	exon19	c.G2023T	p.D675Y	TTTATCGATACTG	.	36.0	3.0	24.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
ODF2	4957	hgsc.bcm.edu	hg19	9	131256869	131256869	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	ODF2_ENST00000372814,NS,carcinoma,+1,3	ODF2	NM_153435	exon17	c.T2025C	p.A675A	GCTGGCTGAGTGC	.	228.0	88.0	194.0	1.0	.	227	.	.	.	none	.	.	PASS	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	16941145	16941145	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CUBN	NM_001081	exon54	c.C8448G	p.I2816M	GGATCTGATTGTA	.	88.0	38.0	89.0	0.0	.	515	.	.	.	none	.	.	PASS	Atlas-SNP
JMJD1C	221037	hgsc.bcm.edu	hg19	10	64974605	64974605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	JMJD1C	NM_032776	exon8	c.A1322C	p.K441T	TGTTTTTTATCTT	.	53.0	16.0	30.0	0.0	.	347	.	.	.	none	.	.	PASS	Atlas-SNP
LDB1	8861	hgsc.bcm.edu	hg19	10	103871028	103871028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	LDB1	NM_001113407	exon3	c.T158C	p.L53P	GGCTCCAGGTATG	.	155.0	68.0	125.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
FAM53B	9679	hgsc.bcm.edu	hg19	10	126311947	126311947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	FAM53B	NM_014661	exon5	c.C1133T	p.S378L	CTGTCTGACTCCT	.	38.0	23.0	31.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
TRPM5	29850	hgsc.bcm.edu	hg19	11	2428360	2428360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	TRPM5	NM_014555	exon20	c.G3107A	p.R1036Q	TGCTCCCGCTTGT	.	24.0	15.0	20.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
CALCB	797	hgsc.bcm.edu	hg19	11	15096663	15096663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CALCB	NM_000728	exon3	c.T143A	p.L48H	CGCGCCTCCTGCT	.	419.0	177.0	343.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
PIK3C2A	5286	hgsc.bcm.edu	hg19	11	17150900	17150900	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PIK3C2A	NM_002645	exon12	c.A2346C	p.R782S	TCCCTTTCTCTGC	.	153.0	55.0	96.0	0.0	.	148	.	.	.	none	.	.	PASS	Atlas-SNP
MOGAT2	80168	hgsc.bcm.edu	hg19	11	75431106	75431106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	MOGAT2,colon,carcinoma,0,2	MOGAT2	NM_025098	exon2	c.C161A	p.A54E	TGTATGCGGCCTG	.	131.0	47.0	81.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
ARCN1	372	hgsc.bcm.edu	hg19	11	118464375	118464375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ARCN1	NM_001655	exon8	c.T1203G	p.N401K	AGATAATTTAGAA	.	98.0	42.0	94.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
SORL1	6653	hgsc.bcm.edu	hg19	11	121475939	121475939	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	SORL1	NM_003105	exon34	c.T4769G	p.V1590G	ATAATGTCTACTA	.	79.0	30.0	61.0	0.0	.	218	.	.	.	none	.	.	PASS	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	hg19	11	133789844	133789844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	IGSF9B	NM_014987	exon18	c.C3776T	p.S1259F	CTCTGGGAGGGGG	.	62.0	27.0	32.0	0.0	.	290	.	.	.	none	.	.	PASS	Atlas-SNP
ING4	51147	hgsc.bcm.edu	hg19	12	6760401	6760401	+	Splice_Site	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ING4	NM_001127586	exon8	c.563-1G>A	.	CAAAACCTGAAAC	.	238.0	90.0	162.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
BHLHE41	79365	hgsc.bcm.edu	hg19	12	26276658	26276658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	BHLHE41	NM_030762	exon4	c.A251G	p.E84G	GCTTTCTCCAGAT	.	48.0	19.0	44.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
ERGIC2	51290	hgsc.bcm.edu	hg19	12	29502995	29502995	+	Silent	SNP	A	A	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ERGIC2	NM_016570	exon9	c.T579A	p.I193I	ATGTGGAATTGCC	.	214.0	77.0	168.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
OTOGL	283310	hgsc.bcm.edu	hg19	12	80730767	80730767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	OTOGL	NM_173591	exon41	c.A4816T	p.N1606Y	ATTGTCAATCGGT	.	12.0	5.0	30.0	0.0	.	235	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1CC	5501	hgsc.bcm.edu	hg19	12	111168372	111168372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PPP1CC	NM_002710	exon3	c.G380A	p.C127Y	CTGGCACATTCAT	.	19.0	7.0	13.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
SSTR1	6751	hgsc.bcm.edu	hg19	14	38678806	38678806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	SSTR1	NM_001049	exon3	c.T212C	p.V71A	GCCTGGTGGGGCT	.	133.0	48.0	122.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB1	22890	hgsc.bcm.edu	hg19	14	64988346	64988346	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ZBTB1	NM_014950	exon2	c.C124G	p.L42V	GCAGTTCTAGCTG	.	87.0	27.0	63.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
NPAP1	23742	hgsc.bcm.edu	hg19	15	24921405	24921405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	C15orf2,NS,carcinoma,0,1	.	NM_018958	exon1	c.C391T	p.R131C	TCACCACGTGAGC	.	75.0	26.0	51.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54557623	54557623	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	UNC13C	NM_001080534	exon8	c.T3747A	p.V1249V	TCAAGTTGGAAAG	.	174.0	70.0	118.0	0.0	.	674	.	.	.	none	.	.	PASS	Atlas-SNP
SNX1	6642	hgsc.bcm.edu	hg19	15	64424017	64424017	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	SNX1	NM_003099	exon11	c.G1147C	p.E383Q	CACCAGGAACAGG	.	174.0	69.0	127.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
ALPK3	57538	hgsc.bcm.edu	hg19	15	85411510	85411510	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ALPK3	NM_020778	exon14	c.G5547C	p.R1849S	TGGCAGGAAAGGC	.	92.0	41.0	65.0	0.0	.	289	.	.	.	none	.	.	PASS	Atlas-SNP
SSH2	85464	hgsc.bcm.edu	hg19	17	27959441	27959441	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	SSH2	NM_033389	exon15	c.A2690T	p.K897M	GAATTCTTACGAG	.	189.0	106.0	97.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
TGIF1	7050	hgsc.bcm.edu	hg19	18	3452341	3452341	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	TGIF1	NM_170695	exon1	c.G364C	p.G122R	GCACAGGGTCCAG	.	99.0	50.0	98.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	hg19	18	8378412	8378412	+	Silent	SNP	G	G	T	rs374669816	alternate_allele	TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PTPRM	NM_001105244	exon27	c.G3612T	p.R1204R	ATTCCGGGTAAGT	.	150.0	57.0	82.0	0.0	.	185	.	.	.	alt	.	.	PASS	Atlas-SNP
FUT6	2528	hgsc.bcm.edu	hg19	19	5832530	5832530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	FUT6	NM_000150	exon3	c.C49A	p.L17M	TGGTCAGACAGCA	.	139.0	61.0	113.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF844	284391	hgsc.bcm.edu	hg19	19	12187226	12187226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	ZNF844,NS,carcinoma,0,2	ZNF844	NM_001136501	exon4	c.C1291T	p.L431F	TCATTTCTTCCAC	.	64.0	3.0	38.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
IFNL3	282617	hgsc.bcm.edu	hg19	19	39735444	39735444	+	Missense_Mutation	SNP	C	C	T	rs201018323		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	.	NM_172139	exon1	c.G164A	p.R55K	TTGGCCCTCTTAA	.	347.0	107.0	266.0	0.0	.	.	.	.	.	weak	.	.	PASS	Atlas-SNP
CCDC9	26093	hgsc.bcm.edu	hg19	19	47767895	47767895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CCDC9	NM_015603	exon6	c.G498T	p.K166N	TGAGAAGATGAAT	.	52.0	17.0	36.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF600	162966	hgsc.bcm.edu	hg19	19	53269420	53269420	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ZNF600	NM_198457	exon3	c.A1589T	p.E530V	CTGCACTCATTAC	.	109.0	37.0	67.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF761	388561	hgsc.bcm.edu	hg19	19	53959526	53959526	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ZNF761	NM_001008401	exon7	c.T1765G	p.F589V	TACAGTTTCAAAT	.	103.0	47.0	83.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
CRNKL1	51340	hgsc.bcm.edu	hg19	20	20026023	20026023	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CRNKL1	NM_016652	exon7	c.T1213A	p.F405I	CAAAGAATTCCAC	.	153.0	54.0	110.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	hg19	20	36841970	36841970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	KIAA1755	NM_001029864	exon14	c.G3077A	p.R1026Q	CCTGCCCGGCTCA	.	51.0	23.0	47.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
CABLES2	81928	hgsc.bcm.edu	hg19	20	60967982	60967982	+	Silent	SNP	C	C	G	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CABLES2	NM_031215	exon7	c.G978C	p.S326S	CATGTACGACGCA	.	147.0	52.0	118.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
DGCR8	54487	hgsc.bcm.edu	hg19	22	20077782	20077782	+	Splice_Site	SNP	G	G	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	DGCR8	NM_001190326	exon5	c.1306+1G>C	.	CCGTTGGTGAGTT	.	57.0	25.0	36.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	hg19	22	46931730	46931730	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CELSR1	NM_014246	exon1	c.C1338T	p.Y446Y	CTCGATGTACACG	.	28.0	9.0	29.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
ATP11C	286410	hgsc.bcm.edu	hg19	X	138880882	138880882	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ATP11C	NM_001010986	exon9	c.T740G	p.L247R	AGCAAGAGATTTT	.	59.0	49.0	56.0	0.0	.	319	.	.	.	none	.	.	PASS	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	6717	6717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	.	ENST00000361624	exon1	c.G814A	p.G272S	TACATAGGTATGG	.	9.0	5.0	1.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SLX4	84464	hgsc.bcm.edu	hg19	16	3645657	3645657	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	SLX4	NM_032444	exon9	c.1963delT	p.F655fs	.	.	103.0	41.0	75.0	0.0	.	173	.	0.398058	0	none	.	.	PASS	Atlas-Indel,Pindel
WDR20	91833	hgsc.bcm.edu	hg19	14	102674963	102674964	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	WDR20	NM_001242417	exon4	c.549_550insA	p.V183fs	.	.	60.0	14.0	50.0	0.0	.	35	.	0.233333	0	none	.	.	PASS	Atlas-Indel,Pindel
ARL13B	200894	hgsc.bcm.edu	hg19	3	93761993	93761993	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ARL13B	NM_001174150	exon7	c.932delA	p.N311fs	.	.	164.0	56.0	158.0	0.0	.	52	.	0.341463	0	none	.	.	PASS	Atlas-Indel,Pindel
FOXD4L6	653404	hgsc.bcm.edu	hg19	9	69200398	69200399	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	.	NM_001085476	exon1	c.1215_1216del	p.405_406del	.	.	149.0	15.0	168.0	0.0	.	.	.	0.100671	0	none	.	.	PASS	Atlas-INDEL
FOXD4L3	286380	hgsc.bcm.edu	hg19	9	70919081	70919082	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	FOXD4L3	NM_199135	exon1	c.1213_1214del	p.405_405del	.	.	144.0	27.0	186.0	0.0	.	7	.	0.1875	0	none	.	.	PASS	Atlas-INDEL
IL5RA	3568	hgsc.bcm.edu	hg19	3	3139630	3139630	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	IL5RA	NM_175727	exon7	c.634delG	p.A212fs	.	.	217.0	86.0	168.0	0.0	.	55	.	0.396313	0	none	.	.	PASS	Atlas-Indel,Pindel
MTRR	4552	hgsc.bcm.edu	hg19	5	7895903	7895903	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	MTRR	NM_024010	exon12	c.1694delT	p.I565fs	.	.	81.0	39.0	84.0	0.0	.	74	.	0.481481	0	none	.	.	PASS	Atlas-Indel,Pindel
FAM86B2	653333	hgsc.bcm.edu	hg19	8	12291589	12291590	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	FAM86B2	NM_001137610	exon2	c.131_132insT	p.S44fs	.	.	93.0	13.0	64.0	0.0	.	19	.	0.139785	0	none	.	.	PASS	Atlas-INDEL
NEFH	4744	hgsc.bcm.edu	hg19	22	29885589	29885590	+	In_Frame_Ins	INS	-	-	CCCCTGAGAAGGCCAAGT	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.,4	NEFH	NM_021076	exon4	c.1960_1961insCCCCTGAGAAGGCCAAGT	p.S654delinsSPEKAKS	.	.	309.0	49.0	205.0	0.0	.	178	.	0.158576	0	none	.	.	PASS	Atlas-INDEL
EDEM3	80267	hgsc.bcm.edu	hg19	1	184723718	184723718	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	EDEM3	NM_025191	exon1	c.64delG	p.V22fs	.	.	54.0	13.0	89.0	0.0	.	63	.	0.240741	0	none	.	.	PASS	Atlas-INDEL
OR5AR1	219493	hgsc.bcm.edu	hg19	11	56432020	56432028	+	In_Frame_Del	DEL	CCCTTGATC	CCCTTGATC	-	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	CCCTTGATC	CCCTTGATC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	OR5AR1	NM_001004730	exon1	c.858_866del	p.286_289del	.	.	169.0	27.0	147.0	0.0	.	68	.	0.159763	0	none	.	.	PASS	Atlas-Indel,Pindel
PLXNA4	91584	hgsc.bcm.edu	hg19	7	131859582	131859583	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PLXNA4	NM_020911	exon21	c.3972_3973insTT	p.V1324fs	.	.	172.0	55.0	120.0	0.0	.	873	.	0.320	.	none	.	.	PASS	Pindel
MET	4233	hgsc.bcm.edu	hg19	7	116411633	116411634	+	In_Frame_Ins	INS	-	-	TTGTCTCAATATCAACAGCACTGTTATTACTACTTGGGT	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	MET	NM_001127500	exon13	c.2866_2867insTTGTCTCAATATCAACAGCACTGTTATTACTACTTGGGT	p.V956delinsVVSISTALLLLLGF	.	.	110.0	20.0	68.0	0.0	.	412	.	0.182	.	none	.	.	PASS	Pindel