Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PLCH2	9651	hgsc.bcm.edu	hg19	1	2418423	2418423	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	PLCH2	NM_014638	exon6	c.G894A	p.G298G	TAAGGGGCTGCTG	.	45.0	10.0	52.0	0.0	.	131	.	.	.	none	.	.	PASS	Atlas-SNP
CASZ1	54897	hgsc.bcm.edu	hg19	1	10714628	10714628	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	CASZ1	NM_001079843	exon10	c.C1686T	p.Y562Y	GCTCGTGTACACC	.	165.0	52.0	158.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
KDM1A	23028	hgsc.bcm.edu	hg19	1	23380289	23380289	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	KDM1A	NM_001009999	exon5	c.G747A	p.L249L	TCAGCTGACATTT	.	133.0	47.0	314.0	1.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
TESK2	10420	hgsc.bcm.edu	hg19	1	45812448	45812448	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TESK2	NM_007170	exon9	c.T796A	p.F266I	GCCCGAAATTCTG	.	116.0	47.0	107.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
MCOLN3	55283	hgsc.bcm.edu	hg19	1	85506767	85506767	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	MCOLN3	NM_018298	exon3	c.G322C	p.D108H	TTCGGTCCATATA	.	125.0	44.0	213.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM45	80263	hgsc.bcm.edu	hg19	1	117660955	117660955	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TRIM45	NM_001145635	exon2	c.A923C	p.N308T	AGGGAATTTTCCT	.	99.0	33.0	101.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF281	23528	hgsc.bcm.edu	hg19	1	200378264	200378264	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ZNF281	NM_012482	exon2	c.G570A	p.Q190Q	GTGGTGCTGGGCT	.	87.0	35.0	78.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
LBR	3930	hgsc.bcm.edu	hg19	1	225600280	225600280	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	LBR	NM_194442	exon8	c.T960G	p.H320Q	CACGTAATGAAAC	.	407.0	97.0	540.0	1.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
GMCL1	64395	hgsc.bcm.edu	hg19	2	70096993	70096993	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	GMCL1	NM_178439	exon12	c.T1361G	p.F454C	TAGCATTTAGGTA	.	56.0	20.0	63.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
PCDP1	0	hgsc.bcm.edu	hg19	2	120362785	120362785	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	.	NM_001271049	exon11	c.A1053C	p.K351N	TTCAAAAACGAGA	.	280.0	80.0	419.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PTPN23	25930	hgsc.bcm.edu	hg19	3	47452317	47452317	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	PTPN23	NM_015466	exon20	c.C3029G	p.P1010R	GGCAGCCGCCACC	.	130.0	35.0	108.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
IL17RD	54756	hgsc.bcm.edu	hg19	3	57136553	57136553	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	IL17RD	NM_017563	exon10	c.G933A	p.S311S	GAATGCCGATATG	.	138.0	37.0	145.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJC13	23317	hgsc.bcm.edu	hg19	3	132207851	132207851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	DNAJC13	NM_015268	exon31	c.T3454C	p.F1152L	CAGGCTTTCAAGT	.	44.0	13.0	106.0	0.0	.	253	.	.	.	none	.	.	PASS	Atlas-SNP
WHSC1	7468	hgsc.bcm.edu	hg19	4	1977074	1977074	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	WHSC1	NM_133335	exon20	c.G3568C	p.V1190L	AAAACGGTCTGCC	.	111.0	24.0	99.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
WDR19	57728	hgsc.bcm.edu	hg19	4	39205336	39205336	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	WDR19	NM_025132	exon7	c.A597C	p.E199D	TGCTGAAAGCATG	.	66.0	21.0	133.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
EXOC1	55763	hgsc.bcm.edu	hg19	4	56737307	56737307	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	EXOC1	NM_018261	exon7	c.A872C	p.Q291P	CCCTTCAGGAAGG	.	53.0	18.0	98.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
PABPC4L	132430	hgsc.bcm.edu	hg19	4	135121148	135121148	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	PABPC4L	NM_001114734	exon2	c.G1201T	p.E401X	CATCCTCAGGAGA	.	105.0	29.0	146.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
DDX60L	91351	hgsc.bcm.edu	hg19	4	169315621	169315621	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	DDX60L	NM_001012967	exon28	c.A3805T	p.I1269F	CCCTAATAAGCCC	.	46.0	12.0	95.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
DMXL1	1657	hgsc.bcm.edu	hg19	5	118479556	118479556	+	Silent	SNP	T	T	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	DMXL1	NM_005509	exon14	c.T2397C	p.F799F	AGTCTTTAACATC	.	303.0	97.0	601.0	1.0	.	268	.	.	.	none	.	.	PASS	Atlas-SNP
MEGF10	84466	hgsc.bcm.edu	hg19	5	126705695	126705695	+	Splice_Site	SNP	G	G	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	MEGF10	NM_001256545	exon5	c.412+1G>T	.	CCAGTGGTAAGTT	.	42.0	13.0	33.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
RAB11FIP1	80223	hgsc.bcm.edu	hg19	8	37729061	37729061	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	RAB11FIP1	NM_001002814	exon4	c.C3259G	p.P1087A	TGCCAGGAGGCGG	.	69.0	30.0	45.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	hg19	9	441958	441958	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	DOCK8	NM_203447	exon42	c.C5439T	p.V1813V	GTTTGTCTACAAA	.	83.0	35.0	141.0	0.0	.	401	.	.	.	none	.	.	PASS	Atlas-SNP
SHB	6461	hgsc.bcm.edu	hg19	9	37956019	37956019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	SHB,colon,carcinoma,0,1	SHB	NM_003028	exon4	c.T1087C	p.S363P	AGGGGGATGACTG	.	86.0	4.0	105.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
PRKACG	5568	hgsc.bcm.edu	hg19	9	71628289	71628289	+	Silent	SNP	G	G	A	rs140133619	alternate_allele	TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	PRKACG,mouth,carcinoma,0,1	PRKACG	NM_002732	exon1	c.C720T	p.Y240Y	GTCGGCGTAGAAG	.	91.0	28.0	90.0	0.0	.	65	.	.	.	alt	G|1.000;C|0.000	.	PASS	Atlas-SNP
MAMDC4	158056	hgsc.bcm.edu	hg19	9	139748712	139748712	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	MAMDC4	NM_206920	exon7	c.C720T	p.V240V	CAAGGTCTGCGTG	.	130.0	38.0	106.0	0.0	.	117	.	.	.	none	.	.	PASS	Atlas-SNP
GPAM	57678	hgsc.bcm.edu	hg19	10	113913352	113913352	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	GPAM	NM_001244949	exon22	c.C2443T	p.R815X	TTTGTCGGTTGCA	.	91.0	30.0	106.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM66	9866	hgsc.bcm.edu	hg19	11	8639493	8639493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TRIM66	NM_014818	exon20	c.T3649C	p.X1217R	GCTCTCACACCTG	.	57.0	14.0	95.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
IGSF22	283284	hgsc.bcm.edu	hg19	11	18731076	18731076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	IGSF22	NM_173588	exon18	c.G2856T	p.K952N	GGGGATCTTTGTG	.	102.0	34.0	97.0	0.0	.	211	.	.	.	none	.	.	PASS	Atlas-SNP
GRIN2B	2904	hgsc.bcm.edu	hg19	12	13768093	13768093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	GRIN2B	NM_000834	exon7	c.A1609G	p.M537V	ACACCATGACACT	.	82.0	21.0	93.0	0.0	.	303	.	.	.	none	.	.	PASS	Atlas-SNP
AMHR2	269	hgsc.bcm.edu	hg19	12	53825014	53825014	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	AMHR2	NM_020547	exon11	c.A1479T	p.E493D	CCCAGAAGCACGG	.	68.0	22.0	59.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
TARBP2	6895	hgsc.bcm.edu	hg19	12	53899840	53899840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TARBP2	NM_134323	exon9	c.T1009C	p.C337R	ACTGTGTGTCATG	.	71.0	20.0	78.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
SBNO1	55206	hgsc.bcm.edu	hg19	12	123815855	123815855	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SBNO1	NM_001167856	exon7	c.G977C	p.G326A	CCTTTTCCTACAC	.	94.0	33.0	92.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
ABHD13	84945	hgsc.bcm.edu	hg19	13	108882148	108882148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ABHD13	NM_032859	exon2	c.G582T	p.L194F	TTCCTTGGGTGGA	.	90.0	25.0	129.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
ABHD13	84945	hgsc.bcm.edu	hg19	13	108882149	108882149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ABHD13	NM_032859	exon2	c.G583T	p.G195C	TCCTTGGGTGGAG	.	89.0	25.0	129.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
SNX6	58533	hgsc.bcm.edu	hg19	14	35062293	35062293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SNX6	NM_152233	exon8	c.G712T	p.D238Y	ATGCATCCTTAAC	.	127.0	31.0	269.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
LTBP2	4053	hgsc.bcm.edu	hg19	14	75019017	75019017	+	Silent	SNP	C	C	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	LTBP2	NM_000428	exon6	c.G1272C	p.G424G	GAACTTCCCGGTG	.	83.0	26.0	67.0	0.0	.	158	.	.	.	none	.	.	PASS	Atlas-SNP
TJP1	7082	hgsc.bcm.edu	hg19	15	30019082	30019082	+	Silent	SNP	T	T	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TJP1	NM_175610	exon17	c.A2214C	p.T738T	TCTCATTGTTTTT	.	110.0	26.0	131.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
HMG20A	10363	hgsc.bcm.edu	hg19	15	77750833	77750833	+	Silent	SNP	C	C	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	HMG20A	NM_018200	exon3	c.C84G	p.T28T	GGCTACCACTGGG	.	45.0	15.0	64.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
APOBR	55911	hgsc.bcm.edu	hg19	16	28509637	28509637	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	APOBR	NM_018690	exon3	c.C3191G	p.P1064R	GGACCCCGGTGCC	.	93.0	10.0	55.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
SF3B3	23450	hgsc.bcm.edu	hg19	16	70605581	70605581	+	Silent	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SF3B3	NM_012426	exon26	c.G3519A	p.V1173V	GAATGTGATTGAT	.	93.0	24.0	73.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
GID4	79018	hgsc.bcm.edu	hg19	17	17962263	17962263	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	.	NM_024052	exon4	c.T688A	p.Y230N	GGAGACTACGTCT	.	125.0	33.0	111.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80047603	80047603	+	Splice_Site	SNP	C	C	G	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	FASN	NM_004104	exon13	c.1871-1G>C	.	ACAAGCCTATGGC	.	92.0	15.0	84.0	0.0	.	154	.	.	.	none	.	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9057871	9057871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	MUC16	NM_024690	exon3	c.C29575T	p.P9859S	AGGCAGGATTTGA	.	123.0	36.0	140.0	0.0	.	4315	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF45	7596	hgsc.bcm.edu	hg19	19	44419046	44419046	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ZNF45	NM_003425	exon10	c.T542G	p.I181S	TGGTTAATTTGAA	.	74.0	25.0	86.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF534	147658	hgsc.bcm.edu	hg19	19	52941044	52941044	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ZNF534	NM_001143939	exon4	c.T370A	p.L124I	CATGGATTAACTC	.	257.0	82.0	455.0	0.0	.	105	.	.	.	none	.	.	PASS	Atlas-SNP
CRNKL1	51340	hgsc.bcm.edu	hg19	20	20033152	20033152	+	Silent	SNP	G	G	A	rs140622884		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	CRNKL1	NM_016652	exon2	c.C318T	p.A106A	GACGGAGGCGGCA	.	131.0	38.0	86.0	0.0	.	101	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
TM9SF4	9777	hgsc.bcm.edu	hg19	20	30730877	30730877	+	Silent	SNP	C	C	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	TM9SF4,NS,carcinoma,0,1	TM9SF4	NM_014742	exon6	c.C621T	p.F207F	CCGCTTCGAGGTG	.	69.0	17.0	97.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
ATP7A	538	hgsc.bcm.edu	hg19	X	77268391	77268391	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ATP7A	NM_000052	exon10	c.T2188A	p.Y730N	GGCTGGTACTTCT	.	38.0	22.0	48.0	0.0	.	248	.	.	.	none	.	.	PASS	Atlas-SNP
SETDB1	9869	hgsc.bcm.edu	hg19	1	150900339	150900347	+	In_Frame_Del	DEL	AGATGGATT	AGATGGATT	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	AGATGGATT	AGATGGATT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SETDB1	NM_012432	exon2	c.148_156del	p.50_52del	.	.	219.0	59.0	261.0	0.0	.	204	.	0.269406	0	none	.	.	PASS	Atlas-Indel,Pindel
ANKRD29	147463	hgsc.bcm.edu	hg19	18	21214112	21214112	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ANKRD29	NM_173505	exon5	c.333delC	p.D111fs	.	.	53.0	16.0	55.0	0.0	.	24	.	0.301887	0	none	.	.	PASS	Atlas-INDEL
MEFV	4210	hgsc.bcm.edu	hg19	16	3304171	3304171	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	MEFV	NM_000243	exon2	c.898delC	p.H300fs	.	.	62.0	14.0	53.0	0.0	.	170	.	0.225806	0	none	.	.	PASS	Atlas-Indel,Pindel
TOP2A	7153	hgsc.bcm.edu	hg19	17	38562843	38562844	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TOP2A	NM_001067	exon15	c.1836_1837insA	p.Y612_Y613delinsX	.	.	70.0	31.0	103.0	0.0	.	124	.	0.442857	0	none	.	.	PASS	Atlas-Indel,Pindel
PIK3CG	5294	hgsc.bcm.edu	hg19	7	106508582	106508582	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	PIK3CG	NM_002649	exon2	c.575delA	p.D192fs	.	.	82.0	22.0	49.0	0.0	.	279	.	0.268293	0	none	.	.	PASS	Atlas-Indel,Pindel
NACAD	23148	hgsc.bcm.edu	hg19	7	45125173	45125173	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	NACAD	NM_001146334	exon2	c.607delG	p.E203fs	.	.	107.0	25.0	89.0	0.0	.	44	.	0.233645	0	none	.	.	PASS	Atlas-Indel,Pindel
TEX14	56155	hgsc.bcm.edu	hg19	17	56676917	56676918	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TEX14	NM_001201457	exon14	c.1807_1808del	p.603_603del	.	.	81.0	35.0	62.0	0.0	.	343	.	0.432099	0	none	.	.	PASS	Atlas-Indel,Pindel
DCHS1	8642	hgsc.bcm.edu	hg19	11	6652589	6652589	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	DCHS1	NM_003737	exon8	c.3726delG	p.K1242fs	.	.	77.0	21.0	78.0	0.0	.	277	.	0.272727	0	none	.	.	PASS	Atlas-Indel,Pindel
ELTD1	64123	hgsc.bcm.edu	hg19	1	79470814	79470814	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ELTD1	NM_022159	exon2	c.114delA	p.G38fs	.	.	82.0	20.0	175.0	0.0	.	143	.	0.243902	0	none	.	.	PASS	Atlas-Indel,Pindel
WDR65	149465	hgsc.bcm.edu	hg19	1	43675436	43675439	+	Frame_Shift_Del	DEL	TTGA	TTGA	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	TTGA	TTGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	WDR65	NM_152498	exon11	c.1777_1780del	p.593_594del	.	.	67.0	19.0	59.0	0.0	.	76	.	0.283582	0	none	.	.	PASS	Atlas-Indel,Pindel
SULT6B1	391365	hgsc.bcm.edu	hg19	2	37414574	37414575	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SULT6B1	NM_001032377	exon2	c.122_123insA	p.I41fs	.	.	104.0	30.0	166.0	0.0	.	46	.	0.288	.	none	.	.	PASS	Pindel
MON2	23041	hgsc.bcm.edu	hg19	12	62931886	62931886	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	MON2	NM_015026	exon17	c.2128delT	p.W710fs	.	.	90.0	10.0	163.0	0.0	.	160	.	0.111	.	none	.	.	PASS	Pindel