Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm PRDM16 63976 hgsc.bcm.edu hg19 1 3334451 3334451 + Silent SNP C C T novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . PRDM16 NM_022114 exon11 c.C2751T p.D917D GGCGGACTCGGGC . 311.0 80.0 178.0 0.0 . 147 . . . none . . PASS Atlas-SNP TAS1R2 80834 hgsc.bcm.edu hg19 1 19176018 19176018 + Missense_Mutation SNP G G T novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . TAS1R2 NM_152232 exon4 c.C1284A p.N428K AGTGAAGTTGACC . 121.0 30.0 79.0 0.0 . 134 . . . none . . PASS Atlas-SNP ALDH4A1 8659 hgsc.bcm.edu hg19 1 19201049 19201049 + Missense_Mutation SNP A A G novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . ALDH4A1 NM_003748 exon14 c.T1487C p.V496A CTCAGCACCTTTG . 290.0 67.0 177.0 0.0 . 72 . . . none . . PASS Atlas-SNP ARID1A 8289 hgsc.bcm.edu hg19 1 27106580 27106580 + Missense_Mutation SNP T T C novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . ARID1A NM_006015 exon20 c.T6191C p.L2064P TTACACTCGCCAA . 238.0 58.0 194.0 0.0 . 842 . . . none . . PASS Atlas-SNP HIVEP3 59269 hgsc.bcm.edu hg19 1 42047804 42047804 + Missense_Mutation SNP G G A novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 HIVEP3,colon,carcinoma,0,1 HIVEP3 NM_024503 exon4 c.C2665T p.R889C GGCTGCGCTGGGG . 299.0 70.0 159.0 0.0 . 235 . . . none . . PASS Atlas-SNP FNBP1L 54874 hgsc.bcm.edu hg19 1 94009756 94009756 + Silent SNP G G A novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . FNBP1L NM_001164473 exon12 c.G1257A p.Q419Q ACTACAGAAAGAA . 59.0 17.0 58.0 0.0 . 56 . . . none . . PASS Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152277075 152277075 + Missense_Mutation SNP C C A novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . FLG NM_002016 exon3 c.G10287T p.E3429D CTGACCCTCTTGG . 1349.0 247.0 584.0 1.0 . 900 . . . none . . PASS Atlas-SNP CEP350 9857 hgsc.bcm.edu hg19 1 180047678 180047678 + Missense_Mutation SNP A A T novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . CEP350 NM_014810 exon29 c.A5848T p.S1950C TTAGGCAGCCCTG . 55.0 10.0 44.0 0.0 . 418 . . . none . . PASS Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237617770 237617770 + Missense_Mutation SNP G G T novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . RYR2 NM_001035 exon15 c.G1372T p.D458Y CTGCAGGATCTCA . 104.0 22.0 70.0 0.0 . 1273 . . . none . . PASS Atlas-SNP GEN1 348654 hgsc.bcm.edu hg19 2 17962008 17962008 + Missense_Mutation SNP G G A novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . GEN1 NM_182625 exon14 c.G1529A p.G510E ATTCGGGGATTTC . 98.0 15.0 97.0 0.0 . 79 . . . none . . PASS Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21238283 21238283 + Missense_Mutation SNP G G A novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . APOB NM_000384 exon22 c.C3467T p.A1156V CCATAAGCTGTAG . 201.0 35.0 96.0 0.0 . 761 . . . none . . PASS Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141607702 141607702 + Silent SNP G G A rs368565366 TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 LRP1B,rectum,carcinoma,0,1 LRP1B NM_018557 exon29 c.C4908T p.N1636N AGTTCCGTTAATA . 123.0 25.0 123.0 0.0 . 1315 . . . weak . . PASS Atlas-SNP IGSF10 285313 hgsc.bcm.edu hg19 3 151161388 151161388 + Missense_Mutation SNP T T A novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . IGSF10 NM_178822 exon5 c.A5347T p.N1783Y TTTGGTTTGCAAG . 170.0 45.0 98.0 0.0 . 279 . . . none . . PASS Atlas-SNP GOLIM4 27333 hgsc.bcm.edu hg19 3 167742778 167742778 + Missense_Mutation SNP T T C novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . GOLIM4 NM_014498 exon13 c.A1729G p.N577D CTTCATTTTCATC . 194.0 36.0 156.0 0.0 . 71 . . . none . . PASS Atlas-SNP CENPE 1062 hgsc.bcm.edu hg19 4 104117119 104117119 + Silent SNP A A C novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . CENPE NM_001813 exon4 c.T315G p.V105V GGGTATAACTCCC . 49.0 10.0 54.0 0.0 . 253 . . . none . . PASS Atlas-SNP IL6ST 3572 hgsc.bcm.edu hg19 5 55247844 55247844 + Missense_Mutation SNP C C G novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . IL6ST NM_002184 exon13 c.G1612C p.E538Q CCCACTCTAAGAC . 64.0 6.0 70.0 0.0 . 75 . . . none . . PASS Atlas-SNP PCDHGA1 56114 hgsc.bcm.edu hg19 5 140712677 140712677 + Missense_Mutation SNP A A G novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . PCDHGA1 NM_031993 exon1 c.A2426G p.N809S AGGTAAACTTTTG . 173.0 34.0 104.0 0.0 . 397 . . . none . . PASS Atlas-SNP CSF1R 1436 hgsc.bcm.edu hg19 5 149433707 149433707 + Missense_Mutation SNP A A T novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . CSF1R NM_005211 exon22 c.T2844A p.S948R GTGCTCACTAGAG . 67.0 14.0 28.0 0.0 . 250 . . . none . . PASS Atlas-SNP VARS 7407 hgsc.bcm.edu hg19 6 31762754 31762754 + Missense_Mutation SNP G G T novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . VARS NM_006295 exon2 c.C241A p.P81T CTGCTGGCCACAG . 86.0 15.0 59.0 0.0 . 76 . . . none . . PASS Atlas-SNP AARS2 57505 hgsc.bcm.edu hg19 6 44272835 44272835 + Missense_Mutation SNP T T A novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . AARS2 NM_020745 exon11 c.A1535T p.D512V GGGCTGTCGTCAG . 370.0 34.0 179.0 0.0 . 77 . . . none . . PASS Atlas-SNP SAMD3 154075 hgsc.bcm.edu hg19 6 130505262 130505262 + Missense_Mutation SNP C C T novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . SAMD3 NM_001017373 exon7 c.G640A p.D214N AGCCATCCTCATC . 103.0 5.0 50.0 0.0 . 98 . . . none . . PASS Atlas-SNP PUS7 54517 hgsc.bcm.edu hg19 7 105099624 105099624 + Missense_Mutation SNP A A G novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . PUS7 NM_019042 exon15 c.T1840C p.F614L AAGCAAAAACTGG . 85.0 16.0 100.0 0.0 . 59 . . . none . . PASS Atlas-SNP KIAA1456 57604 hgsc.bcm.edu hg19 8 12879058 12879058 + Silent SNP T T C novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . KIAA1456 NM_020844 exon5 c.T870C p.S290S ACACTCTAGTTTA . 110.0 26.0 64.0 0.0 . 20 . . . none . . PASS Atlas-SNP ST8SIA6 338596 hgsc.bcm.edu hg19 10 17495608 17495608 + Silent SNP C C T novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . ST8SIA6 NM_001004470 exon2 c.G150A p.A50A CCTCAGCGCTGCG . 25.0 9.0 17.0 0.0 . 85 . . . none . . PASS Atlas-SNP MKI67 4288 hgsc.bcm.edu hg19 10 129910454 129910454 + Missense_Mutation SNP T T G novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . MKI67 NM_002417 exon9 c.A1912C p.I638L GTAAAATATCATG . 175.0 39.0 152.0 0.0 . 363 . . . none . . PASS Atlas-SNP CADM1 23705 hgsc.bcm.edu hg19 11 115080343 115080343 + Silent SNP G G T novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 CADM1,NS,carcinoma,0,6 CADM1 NM_014333 exon8 c.C1029A p.T343T GGTGGTGGTTGTT . 120.0 6.0 94.0 0.0 . 74 . . . none . . PASS Atlas-SNP ANAPC5 51433 hgsc.bcm.edu hg19 12 121766167 121766167 + Missense_Mutation SNP T T C novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . ANAPC5 NM_016237 exon10 c.A1256G p.D419G CTGATATCGATGA . 120.0 17.0 76.0 0.0 . 60 . . . none . . PASS Atlas-SNP ANAPC5 51433 hgsc.bcm.edu hg19 12 121766168 121766168 + Missense_Mutation SNP C C A novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . ANAPC5 NM_016237 exon10 c.G1255T p.D419Y TGATATCGATGAG . 121.0 18.0 76.0 0.0 . 60 . . . none . . PASS Atlas-SNP MCF2L 23263 hgsc.bcm.edu hg19 13 113741757 113741757 + Missense_Mutation SNP A A G novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . MCF2L NM_001112732 exon22 c.A2582G p.K861R GCTACAAGCAGTC . 56.0 12.0 22.0 0.0 . 182 . . . none . . PASS Atlas-SNP HSPA2 3306 hgsc.bcm.edu hg19 14 65009419 65009419 + Missense_Mutation SNP C C A novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . HSPA2 NM_021979 exon1 c.C1852A p.P618T GGTGGTCCTGGCG . 106.0 30.0 59.0 0.0 . 83 . . . none . . PASS Atlas-SNP EIF2AK4 440275 hgsc.bcm.edu hg19 15 40324962 40324962 + Missense_Mutation SNP A A G novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . EIF2AK4 NM_001013703 exon37 c.A4733G p.D1578G AGGTGGATCTACC . 78.0 16.0 87.0 0.0 . 107 . . . none . . PASS Atlas-SNP TMC7 79905 hgsc.bcm.edu hg19 16 19051691 19051691 + Silent SNP C C A novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . TMC7 NM_024847 exon9 c.C1260A p.I420I TTTTATCACCCCA . 184.0 37.0 157.0 0.0 . 75 . . . none . . PASS Atlas-SNP NETO2 81831 hgsc.bcm.edu hg19 16 47117430 47117430 + Missense_Mutation SNP C C T rs372424394 TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . NETO2 NM_018092 exon9 c.G1280A p.R427H GAGGAGCGCCGCA . 372.0 78.0 154.0 0.0 . 67 . . . weak . . PASS Atlas-SNP ZFHX3 463 hgsc.bcm.edu hg19 16 72821615 72821615 + Silent SNP G G A novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 ZFHX3,NS,carcinoma,0,1 ZFHX3 NM_006885 exon10 c.C10560T p.G3520G GCCGCCGCCACCG . 96.0 4.0 46.0 1.0 . 404 . . . none . . PASS Atlas-SNP EIF4A1 1973 hgsc.bcm.edu hg19 17 7478578 7478578 + Splice_Site SNP T T G novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . EIF4A1 NM_001204510 exon4 c.345+2T>G . AGCAGGTAAGAGT . 190.0 41.0 134.0 0.0 . 38 . . . none . . PASS Atlas-SNP MED24 9862 hgsc.bcm.edu hg19 17 38187790 38187790 + Splice_Site SNP C C G novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . MED24 NM_001079518 exon11 c.1028+1G>C . CTCATACTTGCAG . 356.0 55.0 156.0 0.0 . 89 . . . none . . PASS Atlas-SNP NPEPPS 9520 hgsc.bcm.edu hg19 17 45669357 45669357 + Silent SNP A A T novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . NPEPPS NM_006310 exon11 c.A1296T p.I432I TGAGATATTTGAT . 133.0 17.0 76.0 0.0 . 59 . . . none . . PASS Atlas-SNP CEP95 90799 hgsc.bcm.edu hg19 17 62532827 62532827 + Missense_Mutation SNP G G C novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . CEP95 NM_138363 exon18 c.G2178C p.Q726H CCACCAGGATGAA . 155.0 47.0 62.0 0.0 . 103 . . . none . . PASS Atlas-SNP ZNF419 79744 hgsc.bcm.edu hg19 19 58005060 58005060 + Missense_Mutation SNP T T G novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . ZNF419 NM_001098491 exon5 c.T1138G p.F380V GGGAAATTTTTTA . 227.0 42.0 178.0 0.0 . 134 . . . none . . PASS Atlas-SNP NDUFAF5 79133 hgsc.bcm.edu hg19 20 13775537 13775537 + Missense_Mutation SNP A A T novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . . NM_024120 exon5 c.A429T p.E143D TGAAGAATTCCTT . 48.0 6.0 45.0 0.0 . . . . . none . . PASS Atlas-SNP GART 2618 hgsc.bcm.edu hg19 21 34904710 34904710 + Missense_Mutation SNP C C T novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . GART NM_001136005 exon5 c.G469A p.G157R TCACCCCTTTTCC . 627.0 130.0 402.0 0.0 . 81 . . . none . . PASS Atlas-SNP ADORA2A 135 hgsc.bcm.edu hg19 22 24837246 24837246 + Missense_Mutation SNP C C T novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . ADORA2A NM_000675 exon3 c.C1028T p.P343L ACCCGCCAGGAGT . 71.0 17.0 41.0 0.0 . 44 . . . none . . PASS Atlas-SNP RP2 6102 hgsc.bcm.edu hg19 X 46713306 46713306 + Missense_Mutation SNP C C G novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . RP2 NM_006915 exon2 c.C498G p.I166M AAGTATCTTCAAC . 229.0 34.0 193.0 0.0 . 37 . . . none . . PASS Atlas-SNP SLITRK2 84631 hgsc.bcm.edu hg19 X 144904238 144904238 + Nonsense_Mutation SNP C C T novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . SLITRK2 NM_001144005 exon5 c.C295T p.Q99X GGGTTACAGGAGA . 243.0 48.0 155.0 0.0 . 221 . . . none . . PASS Atlas-SNP GRPR 2925 hgsc.bcm.edu hg19 X 16168549 16168550 + Frame_Shift_Ins INS - - C novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . GRPR NM_005314 exon2 c.535_536insC p.S179fs . . 376.0 68.0 158.0 0.0 . 51 . 0.180851 0 none . . PASS Atlas-INDEL ZNF184 7738 hgsc.bcm.edu hg19 6 27420221 27420223 + In_Frame_Del DEL TGG TGG - novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 TGG TGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . ZNF184 NM_007149 exon6 c.1116_1118del p.372_373del . . 103.0 20.0 89.0 0.0 . 89 . 0.194175 0 none . . PASS Atlas-INDEL TSG101 7251 hgsc.bcm.edu hg19 11 18541141 18541142 + Frame_Shift_Del DEL TG TG - novel TCGA-J7-8537-01A-11D-2396-08 TCGA-J7-8537-10A-01D-2396-08 TG TG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b 56af51d5-45a7-4a64-ba3e-f810d95407f8 . TSG101 NM_006292 exon2 c.52_53del p.18_18del . . 136.0 24.0 161.0 0.0 . 43 . 0.176471 0 none . . PASS Atlas-INDEL