Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm SPOCD1 90853 hgsc.bcm.edu hg19 1 32265460 32265460 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . SPOCD1 NM_144569 exon6 c.G1733A p.G578D ATTGGGCCACTCT . 101.0 44.0 108.0 0.0 . 109 . . . none . . PASS Atlas-SNP SFPQ 6421 hgsc.bcm.edu hg19 1 35656516 35656516 + Silent SNP A A G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . SFPQ NM_005066 exon3 c.T1098C p.F366F TGTGGCAAAGCGA . 192.0 93.0 183.0 0.0 . 51 . . . none . . PASS Atlas-SNP LRRC8D 55144 hgsc.bcm.edu hg19 1 90400895 90400895 + Missense_Mutation SNP T T G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . LRRC8D NM_018103 exon3 c.T2268G p.H756Q GCAGCATTTGCAT . 212.0 94.0 184.0 0.0 . 78 . . . none . . PASS Atlas-SNP INSRR 3645 hgsc.bcm.edu hg19 1 156811515 156811515 + Missense_Mutation SNP G G A rs201172210 bycluster TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab INSRR_ENST00000368195,NS,carcinoma,+2,2 INSRR NM_014215 exon20 c.C3469T p.R1157C TCCAGCGCACGGG . 174.0 43.0 182.0 0.0 . 309 . . . weak . . PASS Atlas-SNP CFHR4 10877 hgsc.bcm.edu hg19 1 196887456 196887456 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . CFHR4 NM_001201550 exon10 c.G1657A p.G553R AAATTGGGATATA . 450.0 189.0 456.0 1.0 . 141 . . . none . . PASS Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613036 73613036 + Missense_Mutation SNP G G C novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . ALMS1 NM_015120 exon1 c.G40C p.E14Q CTGGAGGAGGAGG . 241.0 19.0 149.0 0.0 . 384 . . . none . . PASS Atlas-SNP SEMA4C 54910 hgsc.bcm.edu hg19 2 97532110 97532110 + Silent SNP C C T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . SEMA4C NM_017789 exon3 c.G168A p.L56L CAGCGTCAGTGTC . 170.0 71.0 230.0 0.0 . 56 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179474203 179474203 + Silent SNP A A T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . TTN NM_001267550 exon273 c.T51834A p.T17278T TGTAATAGTTGGG . 79.0 40.0 62.0 0.0 . 18412 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179611761 179611761 + Silent SNP T T A novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . TTN NM_133379 exon46 c.A15366T p.G5122G TGGTCCTCCAGTA . 122.0 48.0 139.0 0.0 . 18412 . . . none . . PASS Atlas-SNP CREB1 1385 hgsc.bcm.edu hg19 2 208420472 208420472 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . CREB1 NM_004379 exon2 c.A113G p.Q38R TAGCCCAGGTATA . 125.0 15.0 126.0 0.0 . 21 . . . none . . PASS Atlas-SNP ANKZF1 55139 hgsc.bcm.edu hg19 2 220099756 220099756 + Silent SNP A A G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . ANKZF1 NM_001042410 exon10 c.A1413G p.S471S ACAGTCATCCCAG . 96.0 51.0 100.0 0.0 . 45 . . . none . . PASS Atlas-SNP SPEG 10290 hgsc.bcm.edu hg19 2 220336993 220336993 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . SPEG NM_005876 exon15 c.G3880A p.V1294M GTGGCTGTGACGG . 116.0 53.0 89.0 0.0 . 272 . . . none . . PASS Atlas-SNP SCG2 7857 hgsc.bcm.edu hg19 2 224463553 224463553 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . SCG2 NM_003469 exon2 c.G448A p.D150N CATAATCATCACT . 75.0 26.0 58.0 0.0 . 99 . . . none . . PASS Atlas-SNP C3orf20 84077 hgsc.bcm.edu hg19 3 14803122 14803122 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . C3orf20 NM_032137 exon15 c.G2495A p.S832N AATTCAGGTAAAA . 60.0 25.0 83.0 0.0 . 109 . . . none . . PASS Atlas-SNP C3orf20 84077 hgsc.bcm.edu hg19 3 14803123 14803123 + Splice_Site SNP G G C novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . C3orf20 NM_032137 exon15 c.2495+1G>C . ATTCAGGTAAAAC . 58.0 25.0 83.0 0.0 . 109 . . . none . . PASS Atlas-SNP KBTBD8 84541 hgsc.bcm.edu hg19 3 67053891 67053891 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . KBTBD8 NM_032505 exon3 c.T500C p.L167P AGGAACTCGGAGA . 133.0 64.0 162.0 0.0 . 101 . . . none . . PASS Atlas-SNP PIK3CA 5290 hgsc.bcm.edu hg19 3 178943786 178943786 + Missense_Mutation SNP G G T rs371049193 alternate_allele TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . PIK3CA NM_006218 exon17 c.G2453T p.R818L TTATTCGTATTAT . 80.0 4.0 77.0 0.0 . 8460 . . . alt . . PASS Atlas-SNP DTHD1 401124 hgsc.bcm.edu hg19 4 36345277 36345277 + Missense_Mutation SNP T T G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . DTHD1 NM_001170700 exon9 c.T2177G p.F726C ACGAGTTTCTTTG . 159.0 83.0 163.0 0.0 . 63 . . . none . . PASS Atlas-SNP ATP10D 57205 hgsc.bcm.edu hg19 4 47593159 47593159 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . ATP10D NM_020453 exon23 c.A4042G p.K1348E GCTCTCAAGAAGT . 143.0 81.0 136.0 0.0 . 168 . . . none . . PASS Atlas-SNP LPHN3 23284 hgsc.bcm.edu hg19 4 62936619 62936619 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . LPHN3 NM_015236 exon23 c.G4403T p.S1468I TCACTAGTCTATA . 77.0 34.0 64.0 0.0 . 800 . . . none . . PASS Atlas-SNP SH3RF1 57630 hgsc.bcm.edu hg19 4 170037559 170037559 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . SH3RF1 NM_020870 exon10 c.C2000A p.P667Q ATGCTTGGGGAAG . 93.0 4.0 83.0 0.0 . 60 . . . none . . PASS Atlas-SNP C6 729 hgsc.bcm.edu hg19 5 41201803 41201803 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab C6,NS,carcinoma,0,1 C6 NM_001115131 exon3 c.G157T p.D53Y ACTTATCTACTAC . 79.0 37.0 78.0 0.0 . 197 . . . none . . PASS Atlas-SNP HCN1 348980 hgsc.bcm.edu hg19 5 45462104 45462104 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . HCN1 NM_021072 exon3 c.C855A p.F285L CATGTGGAATATC . 208.0 97.0 231.0 0.0 . 298 . . . none . . PASS Atlas-SNP BDP1 55814 hgsc.bcm.edu hg19 5 70793235 70793235 + Silent SNP A A G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . BDP1 NM_018429 exon13 c.A1938G p.S646S ACATTCAAAAACT . 356.0 166.0 339.0 1.0 . 204 . . . none . . PASS Atlas-SNP AP3B1 8546 hgsc.bcm.edu hg19 5 77511925 77511925 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . AP3B1 NM_003664 exon7 c.T740C p.M247T GTTAGCATGTGGA . 80.0 29.0 78.0 0.0 . 94 . . . none . . PASS Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 90016841 90016841 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . GPR98 NM_032119 exon45 c.A9713G p.Q3238R GTGTGCAGTGGGA . 88.0 45.0 88.0 0.0 . 605 . . . none . . PASS Atlas-SNP DIAPH1 1729 hgsc.bcm.edu hg19 5 140909206 140909206 + Missense_Mutation SNP C C G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . DIAPH1 NM_005219 exon20 c.G2640C p.E880D ATTCACCTCCAGG . 84.0 35.0 90.0 0.0 . 64 . . . none . . PASS Atlas-SNP SOX4 6659 hgsc.bcm.edu hg19 6 21594835 21594835 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . SOX4 NM_003107 exon1 c.G70T p.A24S TCGGGCGCCGGCC . 91.0 4.0 92.0 0.0 . 11 . . . none . . PASS Atlas-SNP TEAD3 7005 hgsc.bcm.edu hg19 6 35443200 35443200 + Silent SNP C C T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . TEAD3 NM_003214 exon12 c.G1107A p.E369E CATGTACTCGCAC . 61.0 41.0 47.0 0.0 . 52 . . . none . . PASS Atlas-SNP TBCC 6903 hgsc.bcm.edu hg19 6 42713428 42713428 + Silent SNP G G T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . TBCC NM_003192 exon1 c.C384A p.R128R CCCCCGGCGCCGC . 103.0 48.0 103.0 0.0 . 31 . . . none . . PASS Atlas-SNP MAP3K7 6885 hgsc.bcm.edu hg19 6 91296573 91296573 + Silent SNP G G C novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . MAP3K7 NM_145333 exon1 c.C30G p.S10S CGAGGAGGAGGAG . 48.0 23.0 60.0 0.0 . 100 . . . none . . PASS Atlas-SNP AHI1 54806 hgsc.bcm.edu hg19 6 135784363 135784363 + Silent SNP A A G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . AHI1 NM_001134832 exon7 c.T831C p.H277H ATCTTGATGAGAA . 43.0 20.0 47.0 0.0 . 81 . . . none . . PASS Atlas-SNP USP17L7 392197 hgsc.bcm.edu hg19 8 11990259 11990259 + Silent SNP C C T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . . NM_001256869 exon1 c.G1260A p.L420L CTCGTCCAACTCG . 120.0 25.0 123.0 0.0 . . . . . none . . PASS Atlas-SNP RNF139 11236 hgsc.bcm.edu hg19 8 125499771 125499771 + Missense_Mutation SNP G G C novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . RNF139 NM_007218 exon2 c.G1881C p.R627S TGACAGGGAATTG . 88.0 42.0 136.0 0.0 . 57 . . . none . . PASS Atlas-SNP C9orf43 257169 hgsc.bcm.edu hg19 9 116185621 116185621 + Silent SNP C C T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab C9orf43,NS,carcinoma,0,1 C9orf43 NM_152786 exon7 c.C499T p.L167L TCATTTCTGGGTC . 68.0 28.0 82.0 0.0 . 49 . . . none . . PASS Atlas-SNP SEC16A 9919 hgsc.bcm.edu hg19 9 139368591 139368591 + Nonsense_Mutation SNP G G T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . SEC16A NM_014866 exon3 c.C3477A p.Y1159X GTAGTAGTAGGCG . 155.0 85.0 158.0 0.0 . 249 . . . none . . PASS Atlas-SNP PGBD3 267004 hgsc.bcm.edu hg19 10 50723698 50723698 + Silent SNP A A G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . PGBD3 NM_170753 exon2 c.C1463C p.S488S CAGAACAAAAGAG . 39.0 20.0 43.0 0.0 . 58 . . . none . . PASS Atlas-SNP IFIT2 3433 hgsc.bcm.edu hg19 10 91065753 91065753 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . IFIT2 NM_001547 exon2 c.C40T p.R14W AGCCTACGGCAAC . 107.0 42.0 98.0 0.0 . 39 . . . none . . PASS Atlas-SNP BTRC 8945 hgsc.bcm.edu hg19 10 103190124 103190124 + Nonsense_Mutation SNP G G A novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . BTRC NM_001256856 exon2 c.G71A p.W24X CTCTGTGGCTGGG . 62.0 25.0 66.0 0.0 . 64 . . . none . . PASS Atlas-SNP MADD 8567 hgsc.bcm.edu hg19 11 47305994 47305994 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . MADD NM_130474 exon12 c.C2035A p.Q679K CAGAATCAGAAGG . 96.0 54.0 91.0 0.0 . 172 . . . none . . PASS Atlas-SNP MAP3K12 7786 hgsc.bcm.edu hg19 12 53877202 53877202 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . MAP3K12 NM_001193511 exon10 c.A1544G p.H515R TTTCCATGCAGGA . 150.0 44.0 92.0 0.0 . 160 . . . none . . PASS Atlas-SNP OTOGL 283310 hgsc.bcm.edu hg19 12 80648329 80648329 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . OTOGL NM_173591 exon14 c.T1393C p.C465R TGGAACTGCACTG . 88.0 47.0 65.0 0.0 . 235 . . . none . . PASS Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64634024 64634024 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . SYNE2 NM_182914 exon91 c.T16679A p.L5560H TCCCACTTAGTGA . 168.0 74.0 160.0 0.0 . 577 . . . none . . PASS Atlas-SNP SPTLC2 9517 hgsc.bcm.edu hg19 14 78028818 78028818 + Silent SNP C C G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . SPTLC2 NM_004863 exon6 c.G771C p.L257L ATCACTCAGAATC . 80.0 41.0 79.0 0.0 . 55 . . . none . . PASS Atlas-SNP SPG11 80208 hgsc.bcm.edu hg19 15 44955757 44955757 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . SPG11 NM_025137 exon1 c.T89C p.L30S GGCACCAACAGCA . 56.0 29.0 60.0 0.0 . 207 . . . none . . PASS Atlas-SNP ST8SIA2 8128 hgsc.bcm.edu hg19 15 92987941 92987941 + Silent SNP G G A novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . ST8SIA2 NM_006011 exon5 c.G624A p.S208S CCCCTCGGTCATC . 129.0 62.0 115.0 0.0 . 41 . . . none . . PASS Atlas-SNP ACSM2A 123876 hgsc.bcm.edu hg19 16 20476871 20476871 + Missense_Mutation SNP G G T rs199594429 by1000genomes;alternate_allele TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . ACSM2A NM_001010845 exon4 c.G210T p.W70C CCTGTGGTGGGTG . 241.0 98.0 242.0 0.0 . 120 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP SMPD3 55512 hgsc.bcm.edu hg19 16 68405808 68405808 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . SMPD3 NM_018667 exon3 c.C277T p.R93W AGGGCCGGCGGGC . 129.0 54.0 171.0 0.0 . 52 . . . none . . PASS Atlas-SNP GLG1 2734 hgsc.bcm.edu hg19 16 74505131 74505131 + Silent SNP C C T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . GLG1 NM_001145667 exon15 c.G2169A p.Q723Q TTTGTTCTGTATC . 79.0 37.0 87.0 0.0 . 106 . . . none . . PASS Atlas-SNP KRT10 3858 hgsc.bcm.edu hg19 17 38975316 38975316 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . KRT10 NM_000421 exon7 c.C1471T p.H491Y CGCCGTGGCCGCC . 98.0 13.0 26.0 0.0 . 56 . . . none . . PASS Atlas-SNP KRT10 3858 hgsc.bcm.edu hg19 17 38975319 38975319 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . KRT10 NM_000421 exon7 c.G1468A p.G490S CGTGGCCGCCGCC . 104.0 19.0 20.0 0.0 . 56 . . . none . . PASS Atlas-SNP ACSF2 80221 hgsc.bcm.edu hg19 17 48538115 48538115 + Missense_Mutation SNP T T G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . ACSF2 NM_025149 exon2 c.T206G p.L69R AGCATCTTAACAG . 161.0 106.0 92.0 0.0 . 46 . . . none . . PASS Atlas-SNP CNDP2 55748 hgsc.bcm.edu hg19 18 72180835 72180835 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . CNDP2 NM_018235 exon8 c.A784G p.I262V CCCGGCATTAACG . 33.0 12.0 43.0 0.0 . 55 . . . none . . PASS Atlas-SNP ZNF556 80032 hgsc.bcm.edu hg19 19 2877876 2877876 + Missense_Mutation SNP G G C novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . ZNF556 NM_024967 exon4 c.G920C p.R307T ACGTGAGAATTCA . 148.0 63.0 128.0 0.0 . 73 . . . none . . PASS Atlas-SNP TMEM145 284339 hgsc.bcm.edu hg19 19 42817621 42817621 + Silent SNP C C T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . TMEM145 NM_173633 exon1 c.C93T p.Y31Y CAAGTACGTGCGG . 82.0 31.0 79.0 0.0 . 55 . . . none . . PASS Atlas-SNP PPP1R13L 10848 hgsc.bcm.edu hg19 19 45889399 45889399 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . PPP1R13L NM_001142502 exon9 c.A1855G p.K619E GGGCCTTGCGCGG . 30.0 16.0 41.0 0.0 . 66 . . . none . . PASS Atlas-SNP CHD6 84181 hgsc.bcm.edu hg19 20 40086018 40086018 + Nonsense_Mutation SNP A A T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . CHD6 NM_032221 exon18 c.T2715A p.Y905X GAGGCGATACACC . 126.0 39.0 94.0 0.0 . 312 . . . none . . PASS Atlas-SNP ADAMTS1 9510 hgsc.bcm.edu hg19 21 28217050 28217050 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . ADAMTS1 NM_006988 exon1 c.G224A p.R75H CGGAGGCGCGTGG . 68.0 27.0 69.0 0.0 . 131 . . . none . . PASS Atlas-SNP CECR6 27439 hgsc.bcm.edu hg19 22 17600499 17600499 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . CECR6 NM_031890 exon1 c.C1519A p.L507I AGCCGAGGAAGAA . 26.0 11.0 32.0 0.0 . 11 . . . none . . PASS Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765229 66765229 + Missense_Mutation SNP G G C novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . AR NM_000044 exon1 c.G241C p.E81Q CAGCAAGAGACTA . 119.0 9.0 125.0 0.0 . 249 . . . none . . PASS Atlas-SNP CACNA2D4 93589 hgsc.bcm.edu hg19 12 2027591 2027592 + Frame_Shift_Ins INS - - G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . CACNA2D4 NM_172364 exon1 c.49_50insC p.T17fs . . 136.0 10.0 82.0 0.0 . 220 . 0.0735294 0 none . . PASS Atlas-INDEL DZIP1 22873 hgsc.bcm.edu hg19 13 96242581 96242581 + Frame_Shift_Del DEL C C - novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . DZIP1 NM_198968 exon17 c.1796delA p.E599fs . . 80.0 40.0 106.0 0.0 . 195 . 0.5 0 none . . PASS Atlas-Indel,Pindel UMPS 7372 hgsc.bcm.edu hg19 3 124458913 124458913 + Frame_Shift_Del DEL C C - novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . UMPS NM_000373 exon4 c.1024delG p.A342fs . . 133.0 45.0 198.0 0.0 . 43 . 0.338346 0 none . . PASS Atlas-INDEL FMN1 342184 hgsc.bcm.edu hg19 15 33261121 33261122 + Frame_Shift_Ins INS - - G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab FMN1_ENST00000334528,NS,carcinoma,0,2 FMN1 NM_001103184 exon4 c.2112_2113insC p.P704fs . . 30.0 10.0 19.0 0.0 . 174 . 0.333333 0 none . . PASS Atlas-INDEL TNFSF8 944 hgsc.bcm.edu hg19 9 117666251 117666257 + Frame_Shift_Del DEL TCAAGAG TCAAGAG - novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 TCAAGAG TCAAGAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . TNFSF8 NM_001244 exon4 c.660_666del p.220_222del . . 64.0 27.0 73.0 0.0 . 34 . 0.421875 0 none . . PASS Atlas-Indel,Pindel KIAA1704 55425 hgsc.bcm.edu hg19 13 45594477 45594477 + Frame_Shift_Del DEL G G - novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . KIAA1704 NM_018559 exon7 c.717delA p.E239fs . . 377.0 156.0 325.0 0.0 . 36 . 0.413793 0 none . . PASS Atlas-Indel,Pindel LRIG3 121227 hgsc.bcm.edu hg19 12 59282143 59282149 + Frame_Shift_Del DEL ATCAGGG ATCAGGG - novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 ATCAGGG ATCAGGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . LRIG3 NM_153377 exon7 c.910_916del p.304_306del . . 90.0 22.0 65.0 0.0 . 120 . 0.244444 0 none . . PASS Atlas-Indel,Pindel UQCRC1 7384 hgsc.bcm.edu hg19 3 48637112 48637118 + Frame_Shift_Del DEL CAGATCT CAGATCT - novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 CAGATCT CAGATCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . UQCRC1 NM_003365 exon12 c.1329_1335del p.443_445del . . 38.0 12.0 43.0 0.0 . 42 . 0.315789 0 none . . PASS Atlas-Indel,Pindel MAPKBP1 23005 hgsc.bcm.edu hg19 15 42107832 42107839 + Frame_Shift_Del DEL AAATCATC AAATCATC - novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 AAATCATC AAATCATC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . MAPKBP1 NM_001128608 exon13 c.1345_1352del p.449_451del . . 60.0 26.0 67.0 0.0 . 120 . 0.433333 0 none . . PASS Atlas-Indel,Pindel FLRT2 23768 hgsc.bcm.edu hg19 14 86089469 86089469 + Frame_Shift_Del DEL G G - novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . FLRT2 NM_013231 exon2 c.1610delT p.M537fs . . 106.0 41.0 98.0 0.0 . 168 . 0.386792 0 none . . PASS Atlas-Indel,Pindel UMPS 7372 hgsc.bcm.edu hg19 3 124458915 124458920 + In_Frame_Del DEL CACGTG CACGTG - novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 CACGTG CACGTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . UMPS NM_000373 exon4 c.1026_1031del p.342_344del . . 135.0 45.0 202.0 0.0 . 43 . 0.333333 0 none . . PASS Atlas-INDEL IRF2BPL 64207 hgsc.bcm.edu hg19 14 77493645 77493656 + In_Frame_Del DEL GCAGCGGCGGCG GCAGCGGCGGCG - novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 GCAGCGGCGGCG GCAGCGGCGGCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . IRF2BPL NM_024496 exon1 c.481_492del p.161_164del . . 31.0 11.0 24.0 0.0 . 40 . 0.354839 0 none . . PASS Atlas-Indel,Pindel SLCO1C1 53919 hgsc.bcm.edu hg19 12 20854365 20854365 + Frame_Shift_Del DEL G G - novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . SLCO1C1 NM_017435 exon3 c.242delT p.V81fs . . 132.0 73.0 114.0 0.0 . 216 . 0.55303 0 none . . PASS Atlas-Indel,Pindel PTK6 5753 hgsc.bcm.edu hg19 20 62168498 62168499 + Frame_Shift_Ins INS - - C novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . PTK6 NM_001256358 exon1 c.170_171insG p.V57fs . . 98.0 10.0 67.0 0.0 . 33 . 0.102041 0 none . . PASS Atlas-INDEL FAM13B 51306 hgsc.bcm.edu hg19 5 137295872 137295873 + Frame_Shift_Ins INS - - T novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . FAM13B NM_001101800 exon12 c.1276_1277insA p.L426fs . . 355.0 90.0 340.0 0.0 . 46 . 0.254 . none . . PASS Pindel CCDC83 220047 hgsc.bcm.edu hg19 11 85630396 85630397 + Frame_Shift_Ins INS - - TG novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . CCDC83 NM_173556 exon12 c.1178_1179insTG p.Y393fs . . 187.0 53.0 194.0 0.0 . 48 . 0.283 . none . . PASS Pindel UMPS 7372 hgsc.bcm.edu hg19 3 124458913 124458920 + Frame_Shift_Del DEL CTCACGTG CTCACGTG - novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 CTCACGTG CTCACGTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . UMPS NM_000373 exon4 c.1024_1031del p.342_344del . . 143.0 41.0 207.0 0.0 . 43 . 0.287 . none . . PASS Pindel SLC4A3 6508 hgsc.bcm.edu hg19 2 220493130 220493131 + Frame_Shift_Ins INS - - G novel TCGA-UZ-A9PL-01A-11D-A382-10 TCGA-UZ-A9PL-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq fd5fd508-d8c8-4630-9580-0c780b3202e1 6b5fdcae-db39-4f26-a632-d6da690b51ab . SLC4A3 NM_005070 exon3 c.55_56insG p.R19fs . . 152.0 49.0 154.0 0.0 . 144 . 0.322 . none . . PASS Pindel