Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm ATAD3B 83858 hgsc.bcm.edu hg19 1 1426049 1426049 + Nonsense_Mutation SNP C C T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . ATAD3B NM_031921 exon15 c.C1612T p.Q538X TCCTGGCAGGTGA . 131.0 43.0 183.0 0.0 . 68 . . . none . . PASS Atlas-SNP MYSM1 114803 hgsc.bcm.edu hg19 1 59165666 59165666 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . MYSM1 NM_001085487 exon1 c.C59A p.A20E GGCTGTGCCCCCG . 43.0 14.0 57.0 0.0 . 50 . . . none . . PASS Atlas-SNP FUBP1 8880 hgsc.bcm.edu hg19 1 78426050 78426050 + Missense_Mutation SNP C C G novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . FUBP1 NM_003902 exon15 c.G1475C p.G492A GGTGGTCCAGGAT . 242.0 102.0 311.0 0.0 . 112 . . . none . . PASS Atlas-SNP CCT3 7203 hgsc.bcm.edu hg19 1 156303343 156303343 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . CCT3 NM_005998 exon5 c.T299C p.I100T CCAAGAATAATTA . 47.0 23.0 65.0 0.0 . 61 . . . none . . PASS Atlas-SNP SLAMF6 114836 hgsc.bcm.edu hg19 1 160460386 160460386 + Missense_Mutation SNP G G A rs148686177 TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . SLAMF6 NM_052931 exon4 c.C736T p.L246F AAACAAGTAACAG . 271.0 117.0 300.0 0.0 . 46 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP RABGAP1L 9910 hgsc.bcm.edu hg19 1 174247864 174247864 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . RABGAP1L NM_014857 exon10 c.T1270C p.W424R CGATTTTGGTATT . 103.0 44.0 100.0 0.0 . 103 . . . none . . PASS Atlas-SNP TNN 63923 hgsc.bcm.edu hg19 1 175087824 175087824 + Silent SNP C C T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . TNN NM_022093 exon11 c.C2514T p.T838T AGAGACCAGGGAG . 312.0 135.0 387.0 0.0 . 297 . . . none . . PASS Atlas-SNP TNN 63923 hgsc.bcm.edu hg19 1 175105980 175105980 + Missense_Mutation SNP A A T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . TNN NM_022093 exon17 c.A3451T p.T1151S AACCTCACCACCG . 82.0 34.0 121.0 0.0 . 297 . . . none . . PASS Atlas-SNP PPP1R15B 84919 hgsc.bcm.edu hg19 1 204380034 204380034 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . PPP1R15B NM_032833 exon1 c.C506A p.P169H GCTGCAGGGTCCA . 163.0 58.0 185.0 0.0 . 67 . . . none . . PASS Atlas-SNP EMILIN1 11117 hgsc.bcm.edu hg19 2 27305967 27305967 + Nonsense_Mutation SNP C C T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . EMILIN1 NM_007046 exon4 c.C1528T p.Q510X GAGGGGCAGCTGC . 58.0 6.0 94.0 0.0 . 75 . . . none . . PASS Atlas-SNP ERLEC1 27248 hgsc.bcm.edu hg19 2 54040085 54040085 + Splice_Site SNP G G C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . ERLEC1 NM_001127398 exon10 c.940-1G>C . ATATTAGGACAAG . 133.0 53.0 161.0 0.0 . 32 . . . none . . PASS Atlas-SNP AUP1 550 hgsc.bcm.edu hg19 2 74755400 74755400 + Missense_Mutation SNP C C T rs377142567 TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . AUP1 NM_181575 exon6 c.G646A p.V216I AAGGGACGAAAAG . 70.0 39.0 86.0 0.0 . 29 . . . weak . . PASS Atlas-SNP POLR1A 25885 hgsc.bcm.edu hg19 2 86327239 86327239 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . POLR1A NM_015425 exon2 c.C134T p.P45L GCCGATGGGTTCC . 90.0 38.0 138.0 0.0 . 137 . . . none . . PASS Atlas-SNP ITPR1 3708 hgsc.bcm.edu hg19 3 4824382 4824382 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . ITPR1 NM_001168272 exon49 c.C6422T p.S2141F CGGCGTCCCCCAG . 176.0 81.0 209.0 0.0 . 659 . . . none . . PASS Atlas-SNP QRICH1 54870 hgsc.bcm.edu hg19 3 49114436 49114436 + Silent SNP T T C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . QRICH1 NM_198880 exon2 c.A15G p.L5L GTTCTCTAGGGAA . 83.0 36.0 93.0 0.0 . 48 . . . none . . PASS Atlas-SNP PTPRG 5793 hgsc.bcm.edu hg19 3 62278935 62278935 + Missense_Mutation SNP A A T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . PTPRG NM_002841 exon30 c.A4291T p.I1431F GTTCTTATTGCAG . 232.0 107.0 259.0 0.0 . 153 . . . none . . PASS Atlas-SNP CADPS 8618 hgsc.bcm.edu hg19 3 62739258 62739258 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . CADPS NM_003716 exon3 c.A746G p.E249G GGGTCCTCTTCTC . 149.0 51.0 149.0 0.0 . 387 . . . none . . PASS Atlas-SNP ATP13A4 84239 hgsc.bcm.edu hg19 3 193175211 193175211 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc ATP13A4,NS,adenocarcinoma,0,1 ATP13A4 NM_032279 exon15 c.C1718T p.P573L TGTGCCGGCACTC . 128.0 55.0 150.0 0.0 . 154 . . . none . . PASS Atlas-SNP SLC4A4 8671 hgsc.bcm.edu hg19 4 72423545 72423545 + Silent SNP T T C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . SLC4A4 NM_001098484 exon22 c.T2880C p.C960C GTTGTGTCTGGCC . 91.0 36.0 109.0 0.0 . 269 . . . none . . PASS Atlas-SNP LPCAT1 79888 hgsc.bcm.edu hg19 5 1501608 1501608 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . LPCAT1 NM_024830 exon2 c.G246T p.K82N GGGTTCCTTCTCC . 161.0 76.0 200.0 0.0 . 70 . . . none . . PASS Atlas-SNP NR2F1 7025 hgsc.bcm.edu hg19 5 92923881 92923881 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . NR2F1 NM_005654 exon2 c.C722T p.P241L TCTTCCCGGATCT . 113.0 11.0 121.0 0.0 . 56 . . . none . . PASS Atlas-SNP PCDHB16 57717 hgsc.bcm.edu hg19 5 140563836 140563836 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc PCDHB16,NS,carcinoma,0,1 PCDHB16 NM_020957 exon1 c.G1702A p.G568S CAGAACGGCTCCG . 41.0 2.0 49.0 0.0 . 159 . . . none . . PASS Atlas-SNP SH3TC2 79628 hgsc.bcm.edu hg19 5 148421039 148421039 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . SH3TC2 NM_024577 exon6 c.C671T p.T224I TGACCTGTCACCA . 142.0 66.0 176.0 0.0 . 178 . . . none . . PASS Atlas-SNP SCAND3 114821 hgsc.bcm.edu hg19 6 28539881 28539881 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . SCAND3 NM_052923 exon4 c.A3785G p.E1262G GCAATCTCAGCAA . 231.0 79.0 308.0 1.0 . 156 . . . none . . PASS Atlas-SNP C6orf222 389384 hgsc.bcm.edu hg19 6 36298150 36298150 + Silent SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . C6orf222 NM_001010903 exon2 c.C318T p.F106F CACGAAGAAGTTC . 42.0 16.0 48.0 0.0 . 72 . . . none . . PASS Atlas-SNP IBTK 25998 hgsc.bcm.edu hg19 6 82950058 82950058 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . IBTK NM_015525 exon2 c.A146G p.D49G AAAACATCCTTGA . 105.0 44.0 153.0 0.0 . 128 . . . none . . PASS Atlas-SNP SMPDL3A 10924 hgsc.bcm.edu hg19 6 123124850 123124850 + Silent SNP A A C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . SMPDL3A NM_006714 exon5 c.A610C p.R204R AACCTTAGGATCA . 143.0 50.0 174.0 0.0 . 31 . . . none . . PASS Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152510469 152510469 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . SYNE1 NM_182961 exon128 c.C23219T p.A7740V ATATAGGCAGAGA . 88.0 44.0 74.0 0.0 . 3227 . . . none . . PASS Atlas-SNP UPP1 7378 hgsc.bcm.edu hg19 7 48139322 48139322 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . UPP1 NM_003364 exon4 c.C100A p.L34I GATATTCTCTATC . 94.0 24.0 59.0 0.0 . 35 . . . none . . PASS Atlas-SNP NPTX2 4885 hgsc.bcm.edu hg19 7 98257796 98257796 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . NPTX2 NM_002523 exon5 c.G1151A p.R384H TCCTTCGCGCACA . 242.0 49.0 159.0 0.0 . 45 . . . none . . PASS Atlas-SNP TNPO3 23534 hgsc.bcm.edu hg19 7 128626881 128626881 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . TNPO3 NM_012470 exon12 c.G1592T p.R531L TGATCTCGGCAGA . 408.0 95.0 253.0 0.0 . 148 . . . none . . PASS Atlas-SNP PRSS55 203074 hgsc.bcm.edu hg19 8 10396206 10396206 + Missense_Mutation SNP G G A rs200907557 by1000genomes;alternate_allele TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . PRSS55 NM_198464 exon5 c.G962A p.G321D CTATGGGCTCCCC . 94.0 44.0 145.0 0.0 . 67 . . . alt G|0.999;C|0.001 . PASS Atlas-SNP RP1L1 94137 hgsc.bcm.edu hg19 8 10468692 10468692 + Silent SNP T T C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . RP1L1 NM_178857 exon4 c.A2916G p.T972T CTCATATGTCATG . 86.0 41.0 121.0 0.0 . 453 . . . none . . PASS Atlas-SNP DOCK5 80005 hgsc.bcm.edu hg19 8 25177162 25177162 + Silent SNP C C T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . DOCK5 NM_024940 exon15 c.C1512T p.V504V CCAAGTCAAGCAG . 57.0 25.0 63.0 0.0 . 167 . . . none . . PASS Atlas-SNP ADAM2 2515 hgsc.bcm.edu hg19 8 39691500 39691500 + Missense_Mutation SNP T T A rs150036296 alternate_allele TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . ADAM2 NM_001464 exon3 c.A151T p.I51F CTTCAATTACAAT . 84.0 29.0 52.0 0.0 . 124 . . . alt T|0.999;G|0.001 . PASS Atlas-SNP SLC20A2 6575 hgsc.bcm.edu hg19 8 42275393 42275393 + Silent SNP G G T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . SLC20A2 NM_001257181 exon11 c.C1887A p.T629T AGGGACGGTCACG . 164.0 76.0 180.0 0.0 . 64 . . . none . . PASS Atlas-SNP CHD7 55636 hgsc.bcm.edu hg19 8 61778469 61778469 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . CHD7 NM_017780 exon38 c.G8971A p.E2991K GAAATAGAAAACA . 104.0 43.0 132.0 0.0 . 534 . . . none . . PASS Atlas-SNP C8orf37 157657 hgsc.bcm.edu hg19 8 96259954 96259954 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc C8orf37,colon,carcinoma,0,1 C8orf37 NM_177965 exon6 c.A515T p.K172M TTCTTCTTTATCA . 91.0 47.0 99.0 0.0 . 15 . . . none . . PASS Atlas-SNP POP1 10940 hgsc.bcm.edu hg19 8 99168546 99168546 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . POP1 NM_001145860 exon15 c.G2326T p.G776W GATGCAGGGTGTC . 97.0 41.0 128.0 0.0 . 85 . . . none . . PASS Atlas-SNP BAI1 575 hgsc.bcm.edu hg19 8 143558843 143558843 + Silent SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . BAI1 NM_001702 exon5 c.G1320A p.Q440Q CCCCCAGTTTGGG . 65.0 25.0 80.0 0.0 . 146 . . . none . . PASS Atlas-SNP VCP 7415 hgsc.bcm.edu hg19 9 35066717 35066717 + Missense_Mutation SNP A A T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . VCP NM_007126 exon4 c.T400A p.Y134N TAAGGTATACCTC . 92.0 37.0 107.0 0.0 . 64 . . . none . . PASS Atlas-SNP NPR2 4882 hgsc.bcm.edu hg19 9 35805967 35805967 + Missense_Mutation SNP G G C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . NPR2 NM_003995 exon14 c.G2188C p.D730H GGCCTGGACCTCA . 75.0 25.0 79.0 0.0 . 162 . . . none . . PASS Atlas-SNP PAX5 5079 hgsc.bcm.edu hg19 9 36966620 36966620 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . PAX5 NM_016734 exon6 c.G706A p.V236M CCAGCACCTCCAG . 85.0 40.0 119.0 0.0 . 250 . . . none . . PASS Atlas-SNP USP20 10868 hgsc.bcm.edu hg19 9 132630512 132630512 + Missense_Mutation SNP G G C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . USP20 NM_001008563 exon11 c.G919C p.A307P TCGCAGGCCGAGA . 95.0 37.0 150.0 0.0 . 186 . . . none . . PASS Atlas-SNP SEC24C 9632 hgsc.bcm.edu hg19 10 75526876 75526876 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . SEC24C NM_198597 exon14 c.G1958A p.G653E CCCCAGGGAAACT . 103.0 44.0 123.0 0.0 . 86 . . . none . . PASS Atlas-SNP FGFBP3 143282 hgsc.bcm.edu hg19 10 93667973 93667973 + Missense_Mutation SNP A A C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . FGFBP3 NM_152429 exon2 c.T754G p.F252V TGACAAAGAAGTT . 40.0 16.0 47.0 0.0 . 6 . . . none . . PASS Atlas-SNP C11orf40 143501 hgsc.bcm.edu hg19 11 4599028 4599028 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . C11orf40 NM_144663 exon1 c.T23C p.V8A CTGGGCACCAGCG . 40.0 10.0 64.0 0.0 . 37 . . . none . . PASS Atlas-SNP PRRG4 79056 hgsc.bcm.edu hg19 11 32858352 32858352 + Silent SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . PRRG4 NM_024081 exon3 c.G252A p.V84V TTTTGTGGATGAA . 96.0 35.0 150.0 0.0 . 15 . . . none . . PASS Atlas-SNP ADAMTS8 11095 hgsc.bcm.edu hg19 11 130281414 130281414 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . ADAMTS8 NM_007037 exon6 c.C1648T p.H550Y CACGGTGTGAAAA . 98.0 46.0 105.0 0.0 . 172 . . . none . . PASS Atlas-SNP CACNA2D4 93589 hgsc.bcm.edu hg19 12 1995492 1995492 + Missense_Mutation SNP T T G novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . CACNA2D4 NM_172364 exon8 c.A890C p.D297A CTCACGTCCACCA . 144.0 22.0 163.0 0.0 . 220 . . . none . . PASS Atlas-SNP A2M 2 hgsc.bcm.edu hg19 12 9221412 9221412 + Missense_Mutation SNP G G C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . A2M NM_000014 exon34 c.C4290G p.F1430L CGTGAAGAACAAG . 68.0 25.0 87.0 0.0 . 180 . . . none . . PASS Atlas-SNP PRICKLE1 144165 hgsc.bcm.edu hg19 12 42860028 42860028 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc PRICKLE1,rectum,carcinoma,0,1 PRICKLE1 NM_001144882 exon6 c.C743A p.A248E TACTCCGCATAGA . 118.0 5.0 141.0 0.0 . 105 . . . none . . PASS Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49427988 49427988 + Silent SNP T T G novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . MLL2 NM_003482 exon38 c.A10602C p.V3534V GCGGTGTACACCA . 47.0 19.0 50.0 0.0 . 1173 . . . none . . PASS Atlas-SNP ARHGEF25 115557 hgsc.bcm.edu hg19 12 58009476 58009476 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . ARHGEF25 NM_001111270 exon13 c.T1337C p.V446A GATATGTATACAA . 111.0 48.0 141.0 0.0 . 111 . . . none . . PASS Atlas-SNP AMDHD1 144193 hgsc.bcm.edu hg19 12 96354188 96354188 + Silent SNP T T C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . AMDHD1 NM_152435 exon5 c.T600C p.A200A AACTGCTACTGAA . 121.0 56.0 144.0 0.0 . 56 . . . none . . PASS Atlas-SNP UHRF1BP1L 23074 hgsc.bcm.edu hg19 12 100452754 100452754 + Missense_Mutation SNP C C G novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . UHRF1BP1L NM_015054 exon14 c.G2301C p.K767N CAAGAGCTTCTTC . 93.0 36.0 133.0 0.0 . 144 . . . none . . PASS Atlas-SNP ACACB 32 hgsc.bcm.edu hg19 12 109687792 109687792 + Nonsense_Mutation SNP C C A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . ACACB NM_001093 exon40 c.C5673A p.Y1891X AAGATACATGATC . 40.0 20.0 53.0 0.0 . 330 . . . none . . PASS Atlas-SNP HTR2A 3356 hgsc.bcm.edu hg19 13 47408978 47408978 + Silent SNP A A G novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . HTR2A NM_000621 exon4 c.T1410C p.C470C TCACACACAGCTC . 66.0 25.0 68.0 0.0 . 98 . . . none . . PASS Atlas-SNP OR4K2 390431 hgsc.bcm.edu hg19 14 20345243 20345243 + Missense_Mutation SNP G G C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . OR4K2 NM_001005501 exon1 c.G817C p.V273L CTGTCTGTGTTTT . 15.0 8.0 12.0 0.0 . 97 . . . none . . PASS Atlas-SNP LTB4R2 56413 hgsc.bcm.edu hg19 14 24780907 24780907 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . LTB4R2 NM_019839 exon2 c.G1037A p.G346E ACCCGGGGGGTGG . 44.0 21.0 68.0 0.0 . 18 . . . none . . PASS Atlas-SNP FANCM 57697 hgsc.bcm.edu hg19 14 45654450 45654450 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . FANCM NM_020937 exon18 c.G4546A p.A1516T GATGAAGCAGAAC . 294.0 121.0 350.0 0.0 . 225 . . . none . . PASS Atlas-SNP RDH12 145226 hgsc.bcm.edu hg19 14 68191956 68191956 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . RDH12 NM_152443 exon5 c.G328A p.E110K TTTGCTGAGGGCT . 102.0 39.0 154.0 0.0 . 43 . . . none . . PASS Atlas-SNP PCNX 22990 hgsc.bcm.edu hg19 14 71568714 71568714 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . PCNX NM_014982 exon31 c.T5597A p.F1866Y ATCATTTTACTTC . 92.0 48.0 77.0 0.0 . 198 . . . none . . PASS Atlas-SNP DDX24 57062 hgsc.bcm.edu hg19 14 94528900 94528900 + Silent SNP A A G novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . DDX24 NM_020414 exon3 c.T786C p.N262N GGCAGCATTCCTC . 68.0 32.0 77.0 0.0 . 82 . . . none . . PASS Atlas-SNP SLC24A5 283652 hgsc.bcm.edu hg19 15 48429007 48429007 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . SLC24A5 NM_205850 exon6 c.G718A p.E240K GCTATGGAGAGAA . 115.0 48.0 197.0 0.0 . 64 . . . none . . PASS Atlas-SNP ZNF609 23060 hgsc.bcm.edu hg19 15 64972427 64972427 + Silent SNP C C T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . ZNF609 NM_015042 exon6 c.C3813T p.S1271S TGGCAGCAAGGTC . 80.0 38.0 131.0 0.0 . 106 . . . none . . PASS Atlas-SNP MYO9A 4649 hgsc.bcm.edu hg19 15 72175994 72175994 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . MYO9A NM_006901 exon28 c.C5339T p.S1780L ACCTCTGACTGGG . 132.0 69.0 166.0 0.0 . 203 . . . none . . PASS Atlas-SNP IQGAP1 8826 hgsc.bcm.edu hg19 15 91017793 91017793 + Silent SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . IQGAP1 NM_003870 exon23 c.G2652A p.Q884Q TTTTCAGGAGGAG . 109.0 54.0 128.0 0.0 . 140 . . . none . . PASS Atlas-SNP ZKSCAN2 342357 hgsc.bcm.edu hg19 16 25255502 25255502 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . ZKSCAN2 NM_001012981 exon6 c.A1585G p.K529E ACAATTTGCTCTT . 96.0 39.0 121.0 0.0 . 90 . . . none . . PASS Atlas-SNP XPO6 23214 hgsc.bcm.edu hg19 16 28164063 28164063 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . XPO6 NM_015171 exon8 c.G1141T p.V381F GGTGAACACTCAC . 125.0 56.0 170.0 0.0 . 177 . . . none . . PASS Atlas-SNP WDR81 124997 hgsc.bcm.edu hg19 17 1628392 1628392 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . WDR81 NM_001163809 exon1 c.C139T p.P47S CTGGCTCCGGCCC . 63.0 17.0 59.0 0.0 . 180 . . . none . . PASS Atlas-SNP CLUH 23277 hgsc.bcm.edu hg19 17 2598316 2598316 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . . NM_015229 exon16 c.C2570T p.A857V AGGTGGGCCACGG . 103.0 31.0 76.0 0.0 . . . . . none . . PASS Atlas-SNP NOS2 4843 hgsc.bcm.edu hg19 17 26096089 26096089 + Missense_Mutation SNP C C G novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc NOS2,NS,adenocarcinoma,0,1 NOS2 NM_000625 exon17 c.G1948C p.A650P GAGAGGCCCCCAG . 52.0 30.0 51.0 1.0 . 113 . . . none . . PASS Atlas-SNP PEX12 5193 hgsc.bcm.edu hg19 17 33903054 33903054 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . PEX12 NM_000286 exon3 c.T827C p.L276S GCAGTCAATGACT . 238.0 63.0 172.0 0.0 . 36 . . . none . . PASS Atlas-SNP MED13 9969 hgsc.bcm.edu hg19 17 60043908 60043908 + Silent SNP T T A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . MED13 NM_005121 exon19 c.A4296T p.A1432A CCATTCTGCTACC . 135.0 36.0 135.0 0.0 . 181 . . . none . . PASS Atlas-SNP LAMA3 3909 hgsc.bcm.edu hg19 18 21523876 21523876 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . LAMA3 NM_198129 exon69 c.G9151A p.D3051N GGGACAGATGGGA . 85.0 43.0 108.0 0.0 . 397 . . . none . . PASS Atlas-SNP HDHD2 84064 hgsc.bcm.edu hg19 18 44635149 44635149 + Nonsense_Mutation SNP A A C novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . HDHD2 NM_032124 exon7 c.T684G p.Y228X TGCTCGATATTTC . 86.0 43.0 89.0 0.0 . 12 . . . none . . PASS Atlas-SNP TMEM147 10430 hgsc.bcm.edu hg19 19 36037600 36037600 + Silent SNP G G T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . TMEM147 NM_032635 exon4 c.G234T p.V78V GGATGTGGCAGAC . 80.0 31.0 88.0 0.0 . 13 . . . none . . PASS Atlas-SNP TMEM147 10430 hgsc.bcm.edu hg19 19 36037611 36037611 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . TMEM147 NM_032635 exon4 c.T245A p.I82K ACCTGATAGGTCT . 81.0 30.0 82.0 0.0 . 13 . . . none . . PASS Atlas-SNP TMEM147 10430 hgsc.bcm.edu hg19 19 36037612 36037612 + Silent SNP A A T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . TMEM147 NM_032635 exon4 c.A246T p.I82I CCTGATAGGTCTA . 81.0 30.0 84.0 0.0 . 13 . . . none . . PASS Atlas-SNP TSKS 60385 hgsc.bcm.edu hg19 19 50243159 50243159 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . TSKS NM_021733 exon11 c.C1653A p.H551Q CTTCAAGTGTAGA . 56.0 26.0 82.0 0.0 . 97 . . . none . . PASS Atlas-SNP SIGLEC11 114132 hgsc.bcm.edu hg19 19 50461600 50461600 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . SIGLEC11 NM_052884 exon8 c.C1591T p.R531C TACAGCGGAGCCT . 118.0 13.0 164.0 0.0 . 70 . . . none . . PASS Atlas-SNP PLCB1 23236 hgsc.bcm.edu hg19 20 8626784 8626784 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . PLCB1 NM_015192 exon5 c.A420T p.Q140H AACAAACCTGCTG . 66.0 37.0 86.0 0.0 . 394 . . . none . . PASS Atlas-SNP APMAP 57136 hgsc.bcm.edu hg19 20 24964632 24964632 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . APMAP NM_020531 exon2 c.G119A p.R40Q GTCACTCGGAAAA . 55.0 23.0 87.0 0.0 . 3 . . . none . . PASS Atlas-SNP TMPRSS15 5651 hgsc.bcm.edu hg19 21 19701538 19701538 + Silent SNP A A G novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . TMPRSS15 NM_002772 exon15 c.T1728C p.I576I ATCGTTAATATTT . 229.0 117.0 312.0 1.0 . 189 . . . none . . PASS Atlas-SNP TMPRSS15 5651 hgsc.bcm.edu hg19 21 19701570 19701570 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . TMPRSS15 NM_002772 exon15 c.C1696T p.L566F AATGAAGTTGTAT . 226.0 95.0 325.0 1.0 . 189 . . . none . . PASS Atlas-SNP GART 2618 hgsc.bcm.edu hg19 21 34901233 34901233 + Missense_Mutation SNP T T A rs376223183 alternate_allele TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . GART NM_001136005 exon8 c.A734T p.D245V AATAGATCATTAG . 41.0 12.0 62.0 0.0 . 81 . . . alt . . PASS Atlas-SNP GART 2618 hgsc.bcm.edu hg19 21 34901234 34901234 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . GART NM_001136005 exon8 c.G733A p.D245N ATAGATCATTAGA . 41.0 12.0 60.0 0.0 . 81 . . . none . . PASS Atlas-SNP COL6A2 1292 hgsc.bcm.edu hg19 21 47538955 47538955 + Silent SNP C C T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . COL6A2 NM_058175 exon14 c.C1191T p.G397G TCAAGGCAACAGT . 273.0 88.0 356.0 1.0 . 351 . . . none . . PASS Atlas-SNP DIP2A 23181 hgsc.bcm.edu hg19 21 47917012 47917012 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . DIP2A NM_206891 exon4 c.C395T p.T132I CCTACACCCCTCC . 109.0 41.0 129.0 0.0 . 332 . . . none . . PASS Atlas-SNP PI4KA 5297 hgsc.bcm.edu hg19 22 21153483 21153483 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . PI4KA NM_058004 exon16 c.G1902T p.M634I GGGCTCCATGACC . 57.0 23.0 69.0 0.0 . 313 . . . none . . PASS Atlas-SNP C22orf43 51233 hgsc.bcm.edu hg19 22 23964292 23964292 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . C22orf43 NM_016449 exon4 c.G370T p.D124Y CATCATCATCATC . 56.0 15.0 64.0 0.0 . 18 . . . none . . PASS Atlas-SNP DRG1 4733 hgsc.bcm.edu hg19 22 31816283 31816283 + Silent SNP C C T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc DRG1,bladder,carcinoma,-2,1 DRG1 NM_004147 exon5 c.C454T p.L152L GATGTCCTGAAAC . 102.0 53.0 129.0 0.0 . 28 . . . none . . PASS Atlas-SNP EFHC2 80258 hgsc.bcm.edu hg19 X 44008117 44008117 + Missense_Mutation SNP A A T novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . EFHC2 NM_025184 exon15 c.T2174A p.M725K GATGGCATACCAA . 157.0 143.0 263.0 1.0 . 81 . . . none . . PASS Atlas-SNP SUV39H1 6839 hgsc.bcm.edu hg19 X 48558807 48558807 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . SUV39H1 NM_003173 exon3 c.A491G p.N164S ACATCAATGAGTA . 81.0 76.0 93.0 0.0 . 36 . . . none . . PASS Atlas-SNP LIMCH1 22998 hgsc.bcm.edu hg19 4 41621302 41621303 + Frame_Shift_Del DEL GA GA - novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 GA GA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc LIMCH1_ENST00000503057,NS,carcinoma,-1,2 LIMCH1 NM_014988 exon8 c.779_780del p.260_260del . . 112.0 52.0 119.0 0.0 . 233 . 0.464286 0 none . . PASS Atlas-Indel,Pindel KRT13 3860 hgsc.bcm.edu hg19 17 39659323 39659323 + Frame_Shift_Del DEL C C - novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . KRT13 NM_002274 exon4 c.764delT p.V255fs . . 93.0 23.0 77.0 0.0 . 72 . 0.247312 0 none . . PASS Atlas-Indel,Pindel CP 1356 hgsc.bcm.edu hg19 3 148930300 148930300 + Frame_Shift_Del DEL T T - novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . CP NM_000096 exon2 c.333delC p.N111fs . . 91.0 39.0 104.0 0.0 . 112 . 0.428571 0 none . . PASS Atlas-Indel,Pindel TIGD6 81789 hgsc.bcm.edu hg19 5 149375763 149375765 + In_Frame_Del DEL TCC TCC - novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 TCC TCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . TIGD6 NM_001243253 exon2 c.148_150del p.50_50del . . 95.0 33.0 110.0 0.0 . 29 . 0.347368 0 none . . PASS Atlas-Indel,Pindel N4BP2 55728 hgsc.bcm.edu hg19 4 40122134 40122134 + Frame_Shift_Del DEL A A - novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . N4BP2 NM_018177 exon9 c.2402delC p.T801fs . . 184.0 71.0 229.0 0.0 . 166 . 0.38587 0 none . . PASS Atlas-Indel,Pindel KDM5A 5927 hgsc.bcm.edu hg19 12 427414 427417 + Frame_Shift_Del DEL AAGT AAGT - novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 AAGT AAGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . KDM5A NM_001042603 exon19 c.2753_2756del p.918_919del . . 85.0 27.0 107.0 0.0 . 307 . 0.317647 0 none . . PASS Atlas-Indel,Pindel TBC1D22A 25771 hgsc.bcm.edu hg19 22 47287237 47287248 + In_Frame_Del DEL GAGCACTATTAC GAGCACTATTAC - novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 GAGCACTATTAC GAGCACTATTAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . TBC1D22A NM_014346 exon6 c.783_794del p.261_265del . . 176.0 31.0 278.0 0.0 . 54 . 0.176136 0 none . . PASS Atlas-Indel,Pindel CCDC149 91050 hgsc.bcm.edu hg19 4 24878300 24878300 + Frame_Shift_Del DEL T T - novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . CCDC149 NM_173463 exon3 c.84delG p.K28fs . . 55.0 18.0 82.0 0.0 . 41 . 0.327273 0 none . . PASS Atlas-Indel,Pindel SNRK 54861 hgsc.bcm.edu hg19 3 43389082 43389082 + Frame_Shift_Del DEL G G - novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . SNRK NM_001100594 exon6 c.1330delA p.R444fs . . 83.0 44.0 85.0 0.0 . 118 . 0.53012 0 none . . PASS Atlas-Indel,Pindel WFDC6 140870 hgsc.bcm.edu hg19 20 44163124 44163139 + Frame_Shift_Del DEL ATGGTATAAAGTAAGG ATGGTATAAAGTAAGG - novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 ATGGTATAAAGTAAGG ATGGTATAAAGTAAGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . WFDC6 NM_080827 exon3 c.229_244del p.77_82del . . 75.0 27.0 102.0 0.0 . 13 . 0.36 0 none . . PASS Atlas-Indel,Pindel C6orf222 389384 hgsc.bcm.edu hg19 6 36298147 36298148 + Frame_Shift_Ins INS - - A novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc C6orf222,NS,carcinoma,0,1 C6orf222 NM_001010903 exon2 c.321_322insT p.F107fs . . 39.0 15.0 48.0 0.0 . 72 . 0.384615 0 none . . PASS Atlas-INDEL POM121L2 94026 hgsc.bcm.edu hg19 6 27278778 27278779 + Frame_Shift_Del DEL GG GG - novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 GG GG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . POM121L2 NM_033482 exon1 c.1172_1173del p.391_391del . . 101.0 38.0 121.0 0.0 . 61 . 0.376238 0 none . . PASS Atlas-Indel,Pindel LPHN3 23284 hgsc.bcm.edu hg19 4 62598714 62598715 + Frame_Shift_Del DEL GT GT - novel TCGA-UZ-A9PR-01A-11D-A42J-10 TCGA-UZ-A9PR-10A-01D-A42M-10 GT GT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 22f04597-4f4f-47c4-9d69-6b3b3f20701d f568a26d-8461-430f-82d6-b31750f9addc . LPHN3 NM_015236 exon5 c.636_637del p.212_213del . . 98.0 45.0 107.0 0.0 . 800 . 0.459184 0 none . . PASS Atlas-Indel,Pindel