Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm MRPL37 51253 hgsc.bcm.edu hg19 1 54671037 54671037 + Silent SNP G G A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . MRPL37 NM_016491 exon3 c.G600A p.R200R GGCCAGGAGGATC . 82.0 40.0 180.0 0.0 . 36 . . . none . . PASS Atlas-SNP ABCA4 24 hgsc.bcm.edu hg19 1 94522185 94522185 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 ABCA4,colon,carcinoma,0,1 ABCA4 NM_000350 exon15 c.G2354A p.R785H GTCATGCGGTCCT . 97.0 55.0 171.0 0.0 . 275 . . . none . . PASS Atlas-SNP DPH5 51611 hgsc.bcm.edu hg19 1 101456156 101456156 + Silent SNP T T C novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . DPH5 NM_015958 exon8 c.A666G p.L222L CCTGGCTAAGCCA . 86.0 39.0 103.0 0.0 . 14 . . . none . . PASS Atlas-SNP ALX3 257 hgsc.bcm.edu hg19 1 110603552 110603552 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . ALX3 NM_006492 exon4 c.G835T p.G279W CACTCCCATGGGG . 146.0 68.0 195.0 0.0 . 16 . . . none . . PASS Atlas-SNP RAB7L1 8934 hgsc.bcm.edu hg19 1 205739969 205739969 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . RAB7L1 NM_001135662 exon5 c.C392A p.P131H GCCCAAGGGGACA . 57.0 4.0 77.0 0.0 . 19 . . . none . . PASS Atlas-SNP OR2T33 391195 hgsc.bcm.edu hg19 1 248436732 248436732 + Nonsense_Mutation SNP G G A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . OR2T33 NM_001004695 exon1 c.C385T p.R129X GATATCGGAGTGG . 472.0 28.0 654.0 0.0 . 133 . . . none . . PASS Atlas-SNP SCN9A 6335 hgsc.bcm.edu hg19 2 167055908 167055908 + Silent SNP G G T novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 SCN9A,NS,carcinoma,0,1 SCN9A NM_002977 exon27 c.C5208A p.S1736S CAGGAAGGATATG . 107.0 48.0 131.0 0.0 . 296 . . . none . . PASS Atlas-SNP VILL 50853 hgsc.bcm.edu hg19 3 38043001 38043001 + Missense_Mutation SNP C C G novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . VILL NM_015873 exon11 c.C1237G p.Q413E CATGGACAGCTGT . 76.0 31.0 65.0 0.0 . 61 . . . none . . PASS Atlas-SNP ASTE1 28990 hgsc.bcm.edu hg19 3 130743519 130743519 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . ASTE1 NM_014065 exon3 c.A632T p.N211I GCTTTATTCATAT . 100.0 44.0 83.0 0.0 . 67 . . . none . . PASS Atlas-SNP WWTR1 25937 hgsc.bcm.edu hg19 3 149243902 149243902 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 WWTR1,NS,carcinoma,0,1 WWTR1 NM_001168278 exon7 c.C916T p.H306Y TCGAATGATATGG . 68.0 20.0 88.0 0.0 . 42 . . . none . . PASS Atlas-SNP MRFAP1 93621 hgsc.bcm.edu hg19 4 6642705 6642705 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . MRFAP1 NM_001272053 exon2 c.T116C p.I39T AGGACATCGCGTC . 109.0 40.0 144.0 0.0 . 10 . . . none . . PASS Atlas-SNP SLC4A4 8671 hgsc.bcm.edu hg19 4 72215763 72215763 + Missense_Mutation SNP A A T novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . SLC4A4 NM_001098484 exon5 c.A524T p.E175V ATCGGGAGGCTTC . 37.0 21.0 69.0 0.0 . 269 . . . none . . PASS Atlas-SNP AGPAT9 84803 hgsc.bcm.edu hg19 4 84516012 84516012 + Silent SNP T T C novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . AGPAT9 NM_001256421 exon8 c.T753C p.H251H GGTTCATGGCGGC . 58.0 24.0 80.0 0.0 . 41 . . . none . . PASS Atlas-SNP HERC6 55008 hgsc.bcm.edu hg19 4 89300229 89300229 + Missense_Mutation SNP G G C novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . HERC6 NM_017912 exon1 c.G156C p.R52S CAGCAGGGGTCAG . 51.0 28.0 69.0 0.0 . 104 . . . none . . PASS Atlas-SNP CLCN3 1182 hgsc.bcm.edu hg19 4 170610219 170610219 + Silent SNP T T A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . CLCN3 NM_001243372 exon5 c.T444A p.I148I AGACATTGCTGCC . 66.0 33.0 89.0 0.0 . 85 . . . none . . PASS Atlas-SNP MED10 84246 hgsc.bcm.edu hg19 5 6372638 6372638 + Missense_Mutation SNP C C A rs145638352 TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . MED10 NM_032286 exon4 c.G386T p.G129V TCCTCCCCCCGGA . 99.0 48.0 115.0 0.0 . 7 . . . weak C|1.000;A|0.000 0.000 PASS Atlas-SNP FAM105A 54491 hgsc.bcm.edu hg19 5 14608915 14608915 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 .,1 FAM105A NM_019018 exon7 c.T686C p.L229P ACACCCTTTTTTC . 59.0 3.0 86.0 0.0 . 32 . . . none . . PASS Atlas-SNP AQPEP 0 hgsc.bcm.edu hg19 5 115351418 115351418 + Silent SNP C C G rs143698388 bycluster;byfrequency;alternate_allele TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 FLJ90650,colon,carcinoma,0,1 . NM_173800 exon18 c.C2712G p.V904V GTATGTCGCAAAA . 122.0 67.0 147.0 0.0 . . . . . alt C|1.000;T|0.000 . PASS Atlas-SNP MARCH3 115123 hgsc.bcm.edu hg19 5 126253785 126253785 + Missense_Mutation SNP C C G novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . MARCH3 NM_178450 exon2 c.G79C p.V27L CCTCCACCGTCTT . 101.0 42.0 118.0 0.0 . 14 . . . none . . PASS Atlas-SNP GRXCR2 643226 hgsc.bcm.edu hg19 5 145246288 145246288 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . GRXCR2 NM_001080516 exon2 c.C340A p.L114I TAGGTAGGGGCTA . 39.0 17.0 74.0 0.0 . 32 . . . none . . PASS Atlas-SNP HMGXB3 22993 hgsc.bcm.edu hg19 5 149386162 149386162 + Silent SNP G G A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . HMGXB3 NM_014983 exon3 c.G264A p.R88R CGAGAGGAGTTAC . 60.0 31.0 95.0 0.0 . 31 . . . none . . PASS Atlas-SNP CDHR2 54825 hgsc.bcm.edu hg19 5 176008530 176008530 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . CDHR2 NM_017675 exon17 c.G2005A p.D669N GTGTCTGACTGCG . 40.0 20.0 51.0 0.0 . 152 . . . none . . PASS Atlas-SNP AGPAT1 10554 hgsc.bcm.edu hg19 6 32139113 32139113 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . AGPAT1 NM_006411 exon2 c.C161A p.P54H CACACAGGGATGG . 93.0 42.0 139.0 0.0 . 22 . . . none . . PASS Atlas-SNP OOEP 441161 hgsc.bcm.edu hg19 6 74078985 74078985 + Missense_Mutation SNP C C A rs199988719 bycluster;alternate_allele TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . OOEP NM_001080507 exon2 c.G314T p.R105L TTCACCCGATTCT . 124.0 52.0 178.0 0.0 . 18 . . . alt . . PASS Atlas-SNP ROS1 6098 hgsc.bcm.edu hg19 6 117686779 117686779 + Missense_Mutation SNP C C G novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . ROS1 NM_002944 exon19 c.G2938C p.V980L AGAAAACTACACC . 213.0 101.0 275.0 0.0 . 728 . . . none . . PASS Atlas-SNP MCM9 254394 hgsc.bcm.edu hg19 6 119149243 119149243 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . MCM9 NM_017696 exon9 c.T1579C p.Y527H AGAAATAGGTTTT . 86.0 4.0 131.0 0.0 . 73 . . . none . . PASS Atlas-SNP TXLNB 167838 hgsc.bcm.edu hg19 6 139563669 139563669 + Silent SNP G G T rs202149819 bycluster;by1000genomes;alternate_allele TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . TXLNB NM_153235 exon10 c.C2049A p.V683V TTAGTCGACGCCT . 83.0 32.0 126.0 0.0 . 96 . . . alt G|0.999;A|0.001 . PASS Atlas-SNP HECW1 23072 hgsc.bcm.edu hg19 7 43485157 43485157 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . HECW1 NM_015052 exon11 c.A2386G p.N796D CCAAGCAATCGGA . 232.0 133.0 233.0 0.0 . 540 . . . none . . PASS Atlas-SNP LRRC17 10234 hgsc.bcm.edu hg19 7 102584947 102584947 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . LRRC17 NM_001031692 exon4 c.G1219A p.A407T TTACCAGCATATC . 118.0 5.0 141.0 0.0 . 45 . . . none . . PASS Atlas-SNP WASL 8976 hgsc.bcm.edu hg19 7 123329152 123329152 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . WASL NM_003941 exon10 c.T1400C p.I467T CCCACAATTCCTG . 68.0 26.0 81.0 0.0 . 70 . . . none . . PASS Atlas-SNP SLC13A4 26266 hgsc.bcm.edu hg19 7 135412241 135412241 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . SLC13A4 NM_012450 exon1 c.G4T p.G2C GCAGGCCCATCGC . 152.0 54.0 139.0 0.0 . 56 . . . none . . PASS Atlas-SNP KCNU1 157855 hgsc.bcm.edu hg19 8 36788664 36788664 + Splice_Site SNP G G A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . KCNU1 NM_001031836 exon25 c.2931+1G>A . GTTAATGTGAGTC . 60.0 25.0 100.0 0.0 . 359 . . . none . . PASS Atlas-SNP FER1L6 654463 hgsc.bcm.edu hg19 8 125061887 125061887 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . FER1L6 NM_001039112 exon22 c.G2764A p.V922I GCTCCTGTTGTGA . 64.0 32.0 103.0 0.0 . 268 . . . none . . PASS Atlas-SNP RASEF 158158 hgsc.bcm.edu hg19 9 85630731 85630731 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . RASEF NM_152573 exon4 c.A754G p.K252E TTAGCTTTTTAAT . 45.0 22.0 56.0 0.0 . 69 . . . none . . PASS Atlas-SNP DNAJC24 120526 hgsc.bcm.edu hg19 11 31451825 31451825 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . DNAJC24 NM_181706 exon5 c.C327A p.H109Q TGATCACTCTTTT . 48.0 24.0 50.0 0.0 . 23 . . . none . . PASS Atlas-SNP CEP57 9702 hgsc.bcm.edu hg19 11 95564230 95564230 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . CEP57 NM_014679 exon11 c.A1313G p.K438R AATTAAAAGCTAC . 212.0 104.0 279.0 0.0 . 40 . . . none . . PASS Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103126956 103126956 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . DYNC2H1 NM_001080463 exon69 c.T10469A p.I3490N TCCAAATTTCCCT . 97.0 50.0 128.0 0.0 . 246 . . . none . . PASS Atlas-SNP EXPH5 23086 hgsc.bcm.edu hg19 11 108384989 108384989 + Nonsense_Mutation SNP A A T novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . EXPH5 NM_015065 exon6 c.T1245A p.Y415X CGATTCATATCTC . 78.0 40.0 126.0 0.0 . 193 . . . none . . PASS Atlas-SNP TULP3 7289 hgsc.bcm.edu hg19 12 3000145 3000145 + Missense_Mutation SNP G G A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . TULP3 NM_003324 exon1 c.G32A p.S11N GTCCCAGCGGCGA . 79.0 43.0 85.0 0.0 . 45 . . . none . . PASS Atlas-SNP DENND5B 160518 hgsc.bcm.edu hg19 12 31632918 31632918 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . DENND5B NM_144973 exon3 c.T509C p.L170P TTCAAAAGGGAAG . 100.0 4.0 104.0 0.0 . 114 . . . none . . PASS Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 71016227 71016227 + Silent SNP A A G novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . PTPRB NM_001109754 exon3 c.T651C p.I217I GTCTGTAATTCCA . 60.0 27.0 74.0 0.0 . 676 . . . none . . PASS Atlas-SNP LHX5 64211 hgsc.bcm.edu hg19 12 113909298 113909298 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . LHX5 NM_022363 exon1 c.G6A p.M2I GTGCACCATCATA . 79.0 41.0 76.0 0.0 . 39 . . . none . . PASS Atlas-SNP WDR25 79446 hgsc.bcm.edu hg19 14 100847806 100847806 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . WDR25 NM_001161476 exon2 c.G545T p.R182I GACTAAGACAGCG . 33.0 20.0 63.0 0.0 . 37 . . . none . . PASS Atlas-SNP DYNC1H1 1778 hgsc.bcm.edu hg19 14 102452422 102452422 + Missense_Mutation SNP C C G novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . DYNC1H1 NM_001376 exon8 c.C1860G p.H620Q TCTTCACGACAAG . 80.0 34.0 78.0 0.0 . 395 . . . none . . PASS Atlas-SNP LOXL1 4016 hgsc.bcm.edu hg19 15 74241804 74241804 + Missense_Mutation SNP A A C novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . LOXL1 NM_005576 exon6 c.A1607C p.H536P AGGTGCACGTGAA . 70.0 34.0 94.0 0.0 . 25 . . . none . . PASS Atlas-SNP NUDT21 11051 hgsc.bcm.edu hg19 16 56473585 56473585 + Missense_Mutation SNP T T A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . NUDT21 NM_007006 exon4 c.A455T p.N152I TCAAAATTTGGTC . 163.0 85.0 119.0 0.0 . 12 . . . none . . PASS Atlas-SNP FOXL1 2300 hgsc.bcm.edu hg19 16 86612503 86612503 + Silent SNP C C A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . FOXL1 NM_005250 exon1 c.C174A p.I58I GCTCATCGCCATG . 189.0 80.0 150.0 0.0 . 39 . . . none . . PASS Atlas-SNP SMG6 23293 hgsc.bcm.edu hg19 17 2185973 2185973 + Missense_Mutation SNP C C T novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . SMG6 NM_017575 exon8 c.G2629A p.E877K CATTCTCTTGCTC . 99.0 27.0 84.0 0.0 . 97 . . . none . . PASS Atlas-SNP OR1A1 8383 hgsc.bcm.edu hg19 17 3119607 3119607 + Missense_Mutation SNP G G T novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . OR1A1 NM_014565 exon1 c.G693T p.K231N CACCAAGGGCGTG . 94.0 68.0 91.0 0.0 . 54 . . . none . . PASS Atlas-SNP ACACA 31 hgsc.bcm.edu hg19 17 35549238 35549238 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . ACACA NM_198834 exon37 c.G4209T p.E1403D ACGATCCTCCTCA . 72.0 25.0 56.0 0.0 . 395 . . . none . . PASS Atlas-SNP CACNA1A 773 hgsc.bcm.edu hg19 19 13409851 13409851 + Missense_Mutation SNP C C G novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . CACNA1A NM_001127221 exon19 c.G2599C p.D867H CCCGATCGTGGTA . 297.0 139.0 518.0 0.0 . 715 . . . none . . PASS Atlas-SNP ZNF99 7652 hgsc.bcm.edu hg19 19 22941279 22941279 + Missense_Mutation SNP C C G novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 ZNF99,NS,carcinoma,0,1 ZNF99 NM_001080409 exon4 c.G1432C p.E478Q GTTTCTCTCCAGT . 29.0 3.0 57.0 0.0 . 273 . . . none . . PASS Atlas-SNP FBL 2091 hgsc.bcm.edu hg19 19 40328472 40328472 + Silent SNP G G A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . FBL NM_001436 exon6 c.C561T p.V187V TGCATAGACTAGA . 90.0 41.0 114.0 0.0 . 37 . . . none . . PASS Atlas-SNP CNOT3 4849 hgsc.bcm.edu hg19 19 54647753 54647753 + Silent SNP G G C novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . CNOT3 NM_014516 exon6 c.G270C p.R90R GGAACGGTTCAAA . 125.0 56.0 169.0 0.0 . 133 . . . none . . PASS Atlas-SNP ZNF335 63925 hgsc.bcm.edu hg19 20 44581108 44581108 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . ZNF335 NM_022095 exon20 c.G2867T p.G956V TTGGCACCAGAGG . 84.0 57.0 86.0 0.0 . 115 . . . none . . PASS Atlas-SNP ITSN1 6453 hgsc.bcm.edu hg19 21 35208937 35208937 + Splice_Site SNP G G A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . ITSN1 NM_003024 exon29 c.3661+1G>A . AGCAATGTAAGTG . 144.0 55.0 201.0 0.0 . 166 . . . none . . PASS Atlas-SNP CCT8L2 150160 hgsc.bcm.edu hg19 22 17073027 17073027 + Silent SNP C C T novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 CCT8L2,NS,adenocarcinoma,0,2 CCT8L2 NM_014406 exon1 c.G414A p.T138T AGTGGCCGTGGCG . 58.0 5.0 86.0 1.0 . 150 . . . none . . PASS Atlas-SNP FOXO4 4303 hgsc.bcm.edu hg19 X 70316598 70316598 + Missense_Mutation SNP C C A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . FOXO4 NM_005938 exon1 c.C220A p.P74T CGGCTCCCAGAGC . 117.0 114.0 183.0 0.0 . 60 . . . none . . PASS Atlas-SNP COX1 5742 hgsc.bcm.edu hg19 MT 6982 6982 + Missense_Mutation SNP A A G novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . . ENST00000361624 exon1 c.A1079G p.N360S TAGCAAACTCATC . 6.0 6.0 21.0 0.0 . . . . . none . . PASS Atlas-SNP ND4 0 hgsc.bcm.edu hg19 MT 11109 11109 + Missense_Mutation SNP T T C novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . . ENST00000361381 exon1 c.T350C p.M117T TAATCATATTTTA . 7.0 5.0 26.0 0.0 . . . . . none . . PASS Atlas-SNP VWF 7450 hgsc.bcm.edu hg19 12 6061618 6061618 + Frame_Shift_Del DEL A A - novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . VWF NM_000552 exon49 c.8055delC p.F2685fs . . 77.0 32.0 115.0 0.0 . 338 . 0.415584 0 none . . PASS Atlas-Indel,Pindel C11orf24 53838 hgsc.bcm.edu hg19 11 68031211 68031211 + Frame_Shift_Del DEL A A - novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 C11orf24,NS,carcinoma,0,1 C11orf24 NM_022338 exon3 c.26delG p.W9X . . 46.0 21.0 55.0 0.0 . 35 . 0.456522 0 none . . PASS Atlas-Indel,Pindel LGR4 55366 hgsc.bcm.edu hg19 11 27413998 27413999 + Frame_Shift_Ins INS - - T novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . LGR4 NM_018490 exon3 c.325_326insA p.V109fs . . 188.0 91.0 255.0 0.0 . 87 . 0.484043 0 none . . PASS Atlas-Indel,Pindel KCNN1 3780 hgsc.bcm.edu hg19 19 18096236 18096240 + Frame_Shift_Del DEL GGTGT GGTGT - novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 GGTGT GGTGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . KCNN1 NM_002248 exon6 c.1032_1036del p.344_346del . . 34.0 15.0 67.0 0.0 . 74 . 0.441176 0 none . . PASS Atlas-Indel,Pindel ZNF792 126375 hgsc.bcm.edu hg19 19 35450319 35450319 + Frame_Shift_Del DEL A A - novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . ZNF792 NM_175872 exon4 c.441delG p.L147fs . . 88.0 45.0 138.0 0.0 . 46 . 0.511364 0 none . . PASS Atlas-Indel,Pindel PARG 8505 hgsc.bcm.edu hg19 10 51363332 51363333 + Frame_Shift_Ins INS - - A novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . PARG NM_003631 exon3 c.740_741insT p.C247fs . . 189.0 29.0 328.0 0.0 . 46 . 0.153439 0 none . . PASS Atlas-INDEL BPTF 2186 hgsc.bcm.edu hg19 17 65919081 65919082 + Frame_Shift_Ins INS - - G novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . BPTF NM_004459 exon16 c.6061_6062insG p.W2021fs . . 114.0 72.0 130.0 0.0 . 415 . 0.631579 0 none . . PASS Atlas-Indel,Pindel ZPLD1 131368 hgsc.bcm.edu hg19 3 102187928 102187929 + Frame_Shift_Del DEL GC GC - novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 GC GC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . ZPLD1 NM_175056 exon8 c.929_930del p.310_310del . . 71.0 44.0 74.0 0.0 . 82 . 0.619718 0 none . . PASS Atlas-Indel,Pindel CAMKK1 84254 hgsc.bcm.edu hg19 17 3786457 3786457 + Frame_Shift_Del DEL G G - novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . CAMKK1 NM_172207 exon6 c.528delG p.P176fs . . 29.0 21.0 30.0 0.0 . 70 . 0.724138 0 none . . PASS Atlas-Indel,Pindel ZNF639 51193 hgsc.bcm.edu hg19 3 179051889 179051926 + Frame_Shift_Del DEL TGGTTTTCGGAGTAGACTTCACACAAATGTTAACAGGC TGGTTTTCGGAGTAGACTTCACACAAATGTTAACAGGC - novel TCGA-UZ-A9PV-01A-11D-A42J-10 TCGA-UZ-A9PV-10A-01D-A42M-10 TGGTTTTCGGAGTAGACTTCACACAAATGTTAACAGGC TGGTTTTCGGAGTAGACTTCACACAAATGTTAACAGGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b0d2ed48-20a7-461b-a05b-356f5c192282 4c8c47c9-9ba8-4f00-a029-5d6e48a25489 . ZNF639 NM_016331 exon7 c.1136_1173del p.379_391del . . 160.0 18.0 170.0 0.0 . 45 . 0.112 . none . . PASS Pindel