Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm CAMTA1 23261 hgsc.bcm.edu hg19 1 7724719 7724719 + Silent SNP G G T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . CAMTA1 NM_015215 exon9 c.G2112T p.L704L GGTCCTGCTCAAG . 48.0 13.0 32.0 0.0 . 226 . . . none . . PASS Atlas-SNP PDPN 10630 hgsc.bcm.edu hg19 1 13910573 13910573 + Silent SNP G G T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 PDPN,colon,carcinoma,0,1 PDPN NM_006474 exon1 c.G273T p.S91S CGCGTCGCTCTGG . 58.0 3.0 35.0 0.0 . 44 . . . none . . PASS Atlas-SNP XKR8 55113 hgsc.bcm.edu hg19 1 28290159 28290159 + Missense_Mutation SNP G G C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . XKR8 NM_018053 exon2 c.G445C p.V149L ACGCTGGTGCTGG . 128.0 32.0 97.0 0.0 . 15 . . . none . . PASS Atlas-SNP EBNA1BP2 10969 hgsc.bcm.edu hg19 1 43632514 43632514 + Silent SNP G G A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . EBNA1BP2 NM_001159936 exon8 c.C855T p.G285G CTGCTGGCCTTTG . 84.0 26.0 70.0 0.0 . 37 . . . none . . PASS Atlas-SNP MPL 4352 hgsc.bcm.edu hg19 1 43814558 43814558 + Silent SNP G G T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . MPL NM_005373 exon9 c.G1353T p.L451L GGAGCTGCGCCCG . 64.0 20.0 55.0 0.0 . 651 . . . none . . PASS Atlas-SNP CCBL2 56267 hgsc.bcm.edu hg19 1 89418774 89418774 + Missense_Mutation SNP G G T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . CCBL2 NM_001008661 exon10 c.C926A p.T309K TAAATCGTGTTTT . 154.0 36.0 108.0 0.0 . 138 . . . none . . PASS Atlas-SNP CNST 163882 hgsc.bcm.edu hg19 1 246811232 246811232 + Missense_Mutation SNP C C G novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . CNST NM_152609 exon9 c.C1729G p.Q577E CTCCTTCAAGATC . 239.0 69.0 161.0 0.0 . 73 . . . none . . PASS Atlas-SNP ADAM17 6868 hgsc.bcm.edu hg19 2 9668056 9668056 + Nonsense_Mutation SNP T T A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . ADAM17 NM_003183 exon5 c.A478T p.K160X TGTCTTTGGTATC . 132.0 37.0 95.0 0.0 . 61 . . . none . . PASS Atlas-SNP SLC35F5 80255 hgsc.bcm.edu hg19 2 114513109 114513109 + Missense_Mutation SNP G G T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . SLC35F5 NM_025181 exon2 c.C53A p.S18Y GGTGAAGAACTCA . 144.0 48.0 105.0 0.0 . 60 . . . none . . PASS Atlas-SNP ITGA6 3655 hgsc.bcm.edu hg19 2 173335733 173335733 + Silent SNP T T C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 .,2 ITGA6 NM_000210 exon5 c.T675C p.T225T TAACACTTTTTTT . 95.0 26.0 81.0 0.0 . 171 . . . none . . PASS Atlas-SNP FARP2 9855 hgsc.bcm.edu hg19 2 242312532 242312532 + Missense_Mutation SNP A A G novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . FARP2 NM_014808 exon2 c.A10G p.I4V GGGGAGATAGAAG . 139.0 35.0 101.0 0.0 . 92 . . . none . . PASS Atlas-SNP PLXNB1 5364 hgsc.bcm.edu hg19 3 48461649 48461649 + Silent SNP T T A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . PLXNB1 NM_001130082 exon11 c.A2046T p.P682P AGGGTCTGGGGAG . 28.0 11.0 23.0 0.0 . 150 . . . none . . PASS Atlas-SNP SMIM4 440957 hgsc.bcm.edu hg19 3 52570837 52570837 + Silent SNP C C A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . . NM_001124767 exon1 c.C66A p.I22I TGGCATCTACCGG . 123.0 34.0 95.0 0.0 . . . . . none . . PASS Atlas-SNP BBX 56987 hgsc.bcm.edu hg19 3 107508715 107508715 + Missense_Mutation SNP C C T rs374184448 TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . BBX NM_001142568 exon14 c.C2285T p.P762L ATGTTCCGGAAAA . 401.0 90.0 297.0 0.0 . 156 . . . weak . . PASS Atlas-SNP COL6A5 256076 hgsc.bcm.edu hg19 3 130159453 130159453 + Missense_Mutation SNP T T C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . COL6A5 NM_153264 exon35 c.T6271C p.Y2091H GAAAATTATGAGA . 93.0 23.0 96.0 0.0 . 205 . . . none . . PASS Atlas-SNP VPS8 23355 hgsc.bcm.edu hg19 3 184714225 184714225 + Missense_Mutation SNP T T A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . VPS8 NM_001009921 exon43 c.T3772A p.C1258S GATTACTGCTCTA . 89.0 36.0 41.0 0.0 . 109 . . . none . . PASS Atlas-SNP WDR19 57728 hgsc.bcm.edu hg19 4 39218827 39218827 + Silent SNP T T C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . WDR19 NM_025132 exon13 c.T1323C p.A441A TGCTGCTGCACTT . 95.0 28.0 82.0 0.0 . 96 . . . none . . PASS Atlas-SNP WDFY3 23001 hgsc.bcm.edu hg19 4 85636511 85636511 + Missense_Mutation SNP C C T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 WDFY3,colon,carcinoma,+1,1 WDFY3 NM_014991 exon50 c.G7901A p.G2634E CCATCTCCAGAGA . 75.0 21.0 50.0 0.0 . 314 . . . none . . PASS Atlas-SNP KIAA0922 23240 hgsc.bcm.edu hg19 4 154478175 154478175 + Nonsense_Mutation SNP G G T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . KIAA0922 NM_001131007 exon6 c.G490T p.G164X GAAGAAGGAAGCA . 223.0 87.0 172.0 0.0 . 214 . . . none . . PASS Atlas-SNP PALLD 23022 hgsc.bcm.edu hg19 4 169842683 169842683 + Splice_Site SNP A A G novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . PALLD NM_016081 exon17 c.2800-2A>G . TGATTTAGGTCAG . 60.0 19.0 48.0 0.0 . 179 . . . none . . PASS Atlas-SNP DMXL1 1657 hgsc.bcm.edu hg19 5 118484771 118484771 + Silent SNP T T C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . DMXL1 NM_005509 exon18 c.T3249C p.C1083C TGAATGTGAGTCA . 185.0 57.0 97.0 0.0 . 268 . . . none . . PASS Atlas-SNP CTNNA1 1495 hgsc.bcm.edu hg19 5 138145868 138145868 + Missense_Mutation SNP A A C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . CTNNA1 NM_001903 exon4 c.A443C p.Y148S ATGTCTACAAATT . 133.0 35.0 82.0 0.0 . 114 . . . none . . PASS Atlas-SNP CTNNA1 1495 hgsc.bcm.edu hg19 5 138145869 138145869 + Silent SNP C C T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . CTNNA1 NM_001903 exon4 c.C444T p.Y148Y TGTCTACAAATTA . 131.0 36.0 82.0 0.0 . 114 . . . none . . PASS Atlas-SNP SKIV2L 6499 hgsc.bcm.edu hg19 6 31930543 31930543 + Missense_Mutation SNP T T G novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . SKIV2L NM_006929 exon12 c.T1264G p.F422V GTCATCTTTGATG . 67.0 15.0 69.0 0.0 . 97 . . . none . . PASS Atlas-SNP KIAA1244 57221 hgsc.bcm.edu hg19 6 138615186 138615186 + Missense_Mutation SNP A A C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . KIAA1244 NM_020340 exon20 c.A3425C p.Y1142S TTCTTTACCAGCT . 115.0 25.0 88.0 0.0 . 236 . . . none . . PASS Atlas-SNP FNDC1 84624 hgsc.bcm.edu hg19 6 159653341 159653341 + Silent SNP G G A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . FNDC1 NM_032532 exon11 c.G1797A p.K599K AGATAAGCCTGGC . 46.0 22.0 42.0 0.0 . 250 . . . none . . PASS Atlas-SNP POLM 27434 hgsc.bcm.edu hg19 7 44116188 44116188 + Missense_Mutation SNP T T A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . POLM NM_013284 exon6 c.A755T p.D252V CACCGGTCAGCAG . 99.0 43.0 72.0 0.0 . 50 . . . none . . PASS Atlas-SNP MAGI2 9863 hgsc.bcm.edu hg19 7 77764393 77764393 + Silent SNP C C A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . MAGI2 NM_012301 exon17 c.G2976T p.V992V GAGCTTCACGATG . 209.0 42.0 110.0 0.0 . 246 . . . none . . PASS Atlas-SNP SLC35G5 83650 hgsc.bcm.edu hg19 8 11189416 11189416 + Silent SNP C C T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . . NM_054028 exon1 c.C801T p.F267F CTCCTTCACATGT . 113.0 6.0 90.0 0.0 . . . . . none . . PASS Atlas-SNP NRG1 3084 hgsc.bcm.edu hg19 8 31497511 31497511 + Missense_Mutation SNP G G C rs367543150 bycluster TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . NRG1 NM_013962 exon1 c.G11C p.R4P GATGGCGACGCGC . 5.0 4.0 1.0 0.0 . 260 . . . weak . . PASS Atlas-SNP ADAM32 203102 hgsc.bcm.edu hg19 8 39044451 39044451 + Missense_Mutation SNP G G C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . ADAM32 NM_145004 exon11 c.G939C p.E313D TCTGGAGGCATTT . 86.0 19.0 72.0 0.0 . 70 . . . none . . PASS Atlas-SNP NKAIN3 286183 hgsc.bcm.edu hg19 8 63659504 63659504 + Missense_Mutation SNP T T A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . NKAIN3 NM_173688 exon4 c.T287A p.M96K ATCTAATGACATT . 68.0 21.0 56.0 0.0 . 32 . . . none . . PASS Atlas-SNP COPS5 10987 hgsc.bcm.edu hg19 8 67955532 67955532 + Missense_Mutation SNP G G T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . COPS5 NM_006837 exon8 c.C941A p.A314D TGGATAGCTTCTA . 103.0 22.0 98.0 0.0 . 29 . . . none . . PASS Atlas-SNP POLR2K 5440 hgsc.bcm.edu hg19 8 101163593 101163593 + Missense_Mutation SNP C C G novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . POLR2K NM_005034 exon2 c.C10G p.Q4E GACACCCAGAAGG . 88.0 24.0 73.0 0.0 . 6 . . . none . . PASS Atlas-SNP TRMT12 55039 hgsc.bcm.edu hg19 8 125463695 125463695 + Missense_Mutation SNP G G T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . TRMT12 NM_017956 exon1 c.G527T p.R176L CAAAACGAGGGCG . 93.0 37.0 60.0 0.0 . 28 . . . none . . PASS Atlas-SNP LRRC19 64922 hgsc.bcm.edu hg19 9 26999703 26999703 + Splice_Site SNP T T C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . LRRC19 . . . . CAGACCTGATAGA . 53.0 16.0 35.0 0.0 . 24 . . . none . . PASS Atlas-SNP QSOX2 169714 hgsc.bcm.edu hg19 9 139100813 139100813 + Missense_Mutation SNP C C A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . QSOX2 NM_181701 exon12 c.G1858T p.A620S GAAGGGCAGGCCT . 75.0 25.0 51.0 0.0 . 63 . . . none . . PASS Atlas-SNP MYO3A 53904 hgsc.bcm.edu hg19 10 26385347 26385347 + Missense_Mutation SNP G G C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . MYO3A NM_017433 exon16 c.G1600C p.A534P ATTTATGCTGGTT . 246.0 65.0 193.0 0.0 . 371 . . . none . . PASS Atlas-SNP MUC15 143662 hgsc.bcm.edu hg19 11 26582626 26582626 + Missense_Mutation SNP G G T rs375176901 alternate_allele TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . MUC15 NM_001135091 exon5 c.C1072A p.R358S AAGTACGAAGTGG . 165.0 51.0 114.0 0.0 . 88 . . . alt . . PASS Atlas-SNP ATG13 9776 hgsc.bcm.edu hg19 11 46671731 46671731 + Missense_Mutation SNP G G A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 ATG13_ENST00000528494,NS,carcinoma,0,2 ATG13 NM_001142673 exon7 c.G322A p.D108N AGGTGTGATAAAG . 31.0 9.0 28.0 0.0 . 60 . . . none . . PASS Atlas-SNP MADD 8567 hgsc.bcm.edu hg19 11 47298344 47298344 + Missense_Mutation SNP T T A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . MADD NM_130474 exon5 c.T1025A p.M342K TGGCAATGATCTA . 97.0 21.0 70.0 0.0 . 172 . . . none . . PASS Atlas-SNP DDB1 1642 hgsc.bcm.edu hg19 11 61079364 61079364 + Silent SNP C C T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . DDB1 NM_001923 exon18 c.G2169A p.K723K GCAGATCTTCCTG . 51.0 10.0 55.0 0.0 . 100 . . . none . . PASS Atlas-SNP MAP4K2 5871 hgsc.bcm.edu hg19 11 64557689 64557689 + Missense_Mutation SNP A A G novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . MAP4K2 NM_004579 exon29 c.T2219C p.L740P AAGGTCAGCTCAG . 27.0 9.0 34.0 0.0 . 83 . . . none . . PASS Atlas-SNP MAML2 84441 hgsc.bcm.edu hg19 11 95825254 95825254 + Silent SNP C C T rs61749250 bycluster TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 MAML2,caecum,carcinoma,0,2 MAML2 NM_032427 exon2 c.G1941A p.Q647Q CTGCTGCTGTTGT . 143.0 6.0 122.0 1.0 . 94 . . . weak . . PASS Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103128412 103128412 + Missense_Mutation SNP A A G novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . DYNC2H1 NM_001080463 exon70 c.A10558G p.N3520D AAAATTAATAACA . 93.0 20.0 73.0 0.0 . 246 . . . none . . PASS Atlas-SNP SIK3 23387 hgsc.bcm.edu hg19 11 116717228 116717228 + Missense_Mutation SNP T T C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . SIK3 NM_025164 exon23 c.A3676G p.S1226G CATCACTCAGGTC . 93.0 21.0 63.0 0.0 . 112 . . . none . . PASS Atlas-SNP ATN1 1822 hgsc.bcm.edu hg19 12 7045900 7045900 + Missense_Mutation SNP G G C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . ATN1 NM_001007026 exon5 c.G1470C p.Q490H GCAGCAGCAGCAG . 43.0 7.0 18.0 0.0 . 95 . . . none . . PASS Atlas-SNP PLBD2 196463 hgsc.bcm.edu hg19 12 113825565 113825565 + Missense_Mutation SNP C C T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . PLBD2 NM_173542 exon11 c.C1456T p.H486Y TTCCTCCATGACC . 62.0 15.0 54.0 0.0 . 33 . . . none . . PASS Atlas-SNP SLC7A8 23428 hgsc.bcm.edu hg19 14 23634614 23634614 + Missense_Mutation SNP T T A rs371235147 alternate_allele TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . SLC7A8 NM_012244 exon3 c.A388T p.I130F GGTAGATCACCAG . 41.0 14.0 31.0 0.0 . 54 . . . alt . . PASS Atlas-SNP SLC7A8 23428 hgsc.bcm.edu hg19 14 23634615 23634615 + Silent SNP C C T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . SLC7A8 NM_012244 exon3 c.G387A p.V129V GTAGATCACCAGC . 41.0 14.0 30.0 0.0 . 54 . . . none . . PASS Atlas-SNP KIAA0391 9692 hgsc.bcm.edu hg19 14 35735939 35735939 + Missense_Mutation SNP A A G novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . KIAA0391 NM_014672 exon6 c.A1282G p.N428D CTCTTGAATGTCG . 172.0 59.0 135.0 0.0 . 35 . . . none . . PASS Atlas-SNP ARID4A 5926 hgsc.bcm.edu hg19 14 58832872 58832872 + Missense_Mutation SNP A A T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . ARID4A NM_002892 exon22 c.A3447T p.K1149N CATCAAAGATGGA . 105.0 24.0 79.0 0.0 . 222 . . . none . . PASS Atlas-SNP GTF2A1 2957 hgsc.bcm.edu hg19 14 81662499 81662499 + Missense_Mutation SNP T T C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . GTF2A1 NM_015859 exon6 c.A565G p.I189V GTGGTATAACCTG . 87.0 29.0 58.0 0.0 . 34 . . . none . . PASS Atlas-SNP SYNE3 161176 hgsc.bcm.edu hg19 14 95903278 95903278 + Missense_Mutation SNP A A T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . SYNE3 NM_152592 exon14 c.T2417A p.F806Y TGGGAGAAATCTT . 68.0 18.0 71.0 0.0 . 130 . . . none . . PASS Atlas-SNP HERC2 8924 hgsc.bcm.edu hg19 15 28437274 28437274 + Missense_Mutation SNP G G C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 HERC2,colon,carcinoma,+2,3 HERC2 NM_004667 exon53 c.C8284G p.R2762G CAGAACGGCCACA . 60.0 13.0 38.0 0.0 . 501 . . . none . . PASS Atlas-SNP CCPG1 9236 hgsc.bcm.edu hg19 15 55652607 55652607 + Missense_Mutation SNP G G C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . CCPG1 NM_020739 exon8 c.C1364G p.A455G TCTTTTGCCTCAA . 95.0 27.0 83.0 0.0 . 74 . . . none . . PASS Atlas-SNP SPESP1 246777 hgsc.bcm.edu hg19 15 69238832 69238832 + Missense_Mutation SNP C C T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . SPESP1 NM_145658 exon2 c.C959T p.P320L GTGTTCCACCAGA . 99.0 30.0 80.0 0.0 . 39 . . . none . . PASS Atlas-SNP CHSY1 22856 hgsc.bcm.edu hg19 15 101718483 101718483 + Missense_Mutation SNP G G A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . CHSY1 NM_014918 exon3 c.C1519T p.L507F TTGAGAGAAAGGA . 69.0 19.0 65.0 0.0 . 60 . . . none . . PASS Atlas-SNP SRRM2 23524 hgsc.bcm.edu hg19 16 2819139 2819139 + Silent SNP C C T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . SRRM2 NM_016333 exon12 c.C7875T p.S2625S CTCCTCCTCTTCT . 46.0 5.0 22.0 0.0 . 263 . . . none . . PASS Atlas-SNP NLRC3 197358 hgsc.bcm.edu hg19 16 3599167 3599167 + Missense_Mutation SNP C C T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 NLRC3,colon,carcinoma,0,1 NLRC3 NM_178844 exon14 c.G2578A p.A860T TGTTGGCGCAGAG . 105.0 26.0 55.0 0.0 . 103 . . . none . . PASS Atlas-SNP C16orf96 342346 hgsc.bcm.edu hg19 16 4650116 4650116 + Missense_Mutation SNP C C G novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . C16orf96 NM_001145011 exon16 c.C3224G p.S1075C CCCGCTCCAGTGC . 109.0 17.0 74.0 0.0 . 28 . . . none . . PASS Atlas-SNP NUDT16L1 84309 hgsc.bcm.edu hg19 16 4744082 4744082 + Missense_Mutation SNP T T A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . NUDT16L1 NM_032349 exon2 c.T257A p.L86Q TGGGCCTGGGCTG . 75.0 34.0 36.0 0.0 . 13 . . . none . . PASS Atlas-SNP CLEC18A 348174 hgsc.bcm.edu hg19 16 69988435 69988435 + Missense_Mutation SNP G G A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . CLEC18A NM_001271197 exon4 c.G415A p.G139R GCGGCAGGAGAGT . 284.0 51.0 222.0 0.0 . 9 . . . none . . PASS Atlas-SNP CLEC18A 348174 hgsc.bcm.edu hg19 16 69988436 69988436 + Missense_Mutation SNP G G A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . CLEC18A NM_001271197 exon4 c.G416A p.G139E CGGCAGGAGAGTG . 283.0 52.0 220.0 0.0 . 9 . . . none . . PASS Atlas-SNP HYDIN 54768 hgsc.bcm.edu hg19 16 70977738 70977738 + Missense_Mutation SNP G G T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . HYDIN NM_001270974 exon42 c.C6646A p.Q2216K GGATCTGCACGAG . 28.0 9.0 22.0 0.0 . 788 . . . none . . PASS Atlas-SNP CHMP1A 5119 hgsc.bcm.edu hg19 16 89715757 89715757 + Splice_Site SNP A A G novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . CHMP1A NM_001083314 exon4 c.232+2T>C . GCACTCACCCCCT . 66.0 19.0 46.0 0.0 . 15 . . . none . . PASS Atlas-SNP TMEM98 26022 hgsc.bcm.edu hg19 17 31258638 31258638 + Missense_Mutation SNP A A G novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 TMEM98,NS,malignant_melanoma,0,1 TMEM98 NM_001033504 exon2 c.A92G p.Y31C AGCGCTACTGCCG . 151.0 69.0 88.0 0.0 . 23 . . . none . . PASS Atlas-SNP VMP1 81671 hgsc.bcm.edu hg19 17 57917269 57917269 + Silent SNP A A G novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . VMP1 NM_030938 exon12 c.A1218G p.K406K AACTAAATAAGTA . 173.0 15.0 79.0 0.0 . 49 . . . none . . PASS Atlas-SNP COLEC12 81035 hgsc.bcm.edu hg19 18 321780 321780 + Missense_Mutation SNP G G C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 COLEC12,NS,NS,0,1 COLEC12 NM_130386 exon9 c.C2091G p.N697K ACCCCAGTTATCC . 100.0 29.0 82.0 0.0 . 121 . . . none . . PASS Atlas-SNP EID2 163126 hgsc.bcm.edu hg19 19 40030283 40030283 + Missense_Mutation SNP A A T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . EID2 NM_153232 exon1 c.T437A p.L146H ACGCTAAGTGGGT . 68.0 25.0 43.0 0.0 . 14 . . . none . . PASS Atlas-SNP ETFB 2109 hgsc.bcm.edu hg19 19 51857559 51857559 + Nonsense_Mutation SNP G G A rs374288379 TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . ETFB NM_001014763 exon1 c.C334T p.R112X TCACTCGGATCTG . 37.0 8.0 37.0 0.0 . 46 . . . weak . . PASS Atlas-SNP ZNF841 284371 hgsc.bcm.edu hg19 19 52568431 52568431 + Missense_Mutation SNP C C T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . ZNF841 NM_001136499 exon7 c.G2704A p.E902K GGTTCTCTCCAGC . 194.0 59.0 156.0 0.0 . 183 . . . none . . PASS Atlas-SNP LAMA5 3911 hgsc.bcm.edu hg19 20 60904037 60904037 + Missense_Mutation SNP G G A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . LAMA5 NM_005560 exon34 c.C4310T p.P1437L CCACATGGACGGG . 67.0 15.0 51.0 0.0 . 268 . . . none . . PASS Atlas-SNP MICAL3 57553 hgsc.bcm.edu hg19 22 18347671 18347671 + Missense_Mutation SNP T T A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . MICAL3 NM_001136004 exon23 c.A2971T p.T991S CTGGGGTTCTCTC . 83.0 26.0 62.0 0.0 . 53 . . . none . . PASS Atlas-SNP MYO18B 84700 hgsc.bcm.edu hg19 22 26351226 26351226 + Missense_Mutation SNP C C T novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . MYO18B NM_032608 exon39 c.C6052T p.R2018W CAGCAGCGGGAGA . 94.0 25.0 46.0 0.0 . 322 . . . none . . PASS Atlas-SNP FRRS1 391059 hgsc.bcm.edu hg19 1 100214136 100214149 + Frame_Shift_Del DEL CTGATCTCCTGGCC CTGATCTCCTGGCC - novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 CTGATCTCCTGGCC CTGATCTCCTGGCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . FRRS1 NM_001013660 exon3 c.177_190del p.59_64del . . 131.0 19.0 95.0 0.0 . 50 . 0.145038 0 none . . PASS Atlas-Indel,Pindel TSHZ2 128553 hgsc.bcm.edu hg19 20 51871518 51871519 + Frame_Shift_Ins INS - - GATG novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . TSHZ2 NM_173485 exon2 c.1521_1522insGATG p.E507fs . . 58.0 11.0 64.0 0.0 . 209 . 0.189655 0 none . . PASS Atlas-Indel,Pindel CPA1 1357 hgsc.bcm.edu hg19 7 130021580 130021594 + In_Frame_Del DEL ATGAGACCATGATCG ATGAGACCATGATCG - novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 ATGAGACCATGATCG ATGAGACCATGATCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . CPA1 NM_001868 exon3 c.256_270del p.86_90del . . 76.0 14.0 63.0 0.0 . 73 . 0.184211 0 none . . PASS Atlas-INDEL FZD7 8324 hgsc.bcm.edu hg19 2 202900385 202900386 + Frame_Shift_Del DEL CT CT - novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . FZD7 NM_003507 exon1 c.1014_1015del p.338_339del . . 82.0 12.0 80.0 0.0 . 70 . 0.146341 0 none . . PASS Atlas-Indel,Pindel EP300 2033 hgsc.bcm.edu hg19 22 41545134 41545134 + Frame_Shift_Del DEL A A - novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . EP300 NM_001429 exon13 c.2333delC p.T778fs . . 193.0 58.0 121.0 0.0 . 367 . 0.300518 0 none . . PASS Atlas-Indel,Pindel OR6C75 390323 hgsc.bcm.edu hg19 12 55759766 55759767 + Frame_Shift_Ins INS - - A novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . OR6C75 NM_001005497 exon1 c.872_873insA p.R291fs . . 60.0 18.0 53.0 0.0 . 67 . 0.3 0 none . . PASS Atlas-Indel,Pindel C16orf13 84326 hgsc.bcm.edu hg19 16 684782 684782 + Frame_Shift_Del DEL C C - novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . C16orf13 NM_032366 exon5 c.505delC p.L169fs . . 57.0 12.0 22.0 0.0 . 11 . 0.210526 0 none . . PASS Atlas-Indel,Pindel KIAA1244 57221 hgsc.bcm.edu hg19 6 138615192 138615194 + In_Frame_Del DEL TGA TGA - novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 TGA TGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . KIAA1244 NM_020340 exon20 c.3430_3432del p.1144_1144del . . 121.0 28.0 89.0 0.0 . 236 . 0.231405 0 none . . PASS Atlas-Indel,Pindel WDR81 124997 hgsc.bcm.edu hg19 17 1629728 1629728 + Frame_Shift_Del DEL T T - novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . WDR81 NM_001163809 exon1 c.1474delA p.I492fs . . 93.0 44.0 73.0 0.0 . 180 . 0.473118 0 none . . PASS Atlas-Indel,Pindel HLA-DOB 3112 hgsc.bcm.edu hg19 6 32783066 32783067 + Frame_Shift_Ins INS - - C novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . HLA-DOB NM_002120 exon2 c.116_117insG p.A39fs . . 121.0 35.0 88.0 0.0 . 17 . 0.289256 0 none . . PASS Atlas-Indel,Pindel RALGAPA2 57186 hgsc.bcm.edu hg19 20 20392748 20392749 + Frame_Shift_Ins INS - - GGTTCTGAATTATTGCTTCGAGATACAG novel TCGA-Y8-A898-01A-11D-A34Z-10 TCGA-Y8-A898-10A-01D-A34Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c71a07f-83ad-4612-a896-217d2fde9904 b87bb919-a7fb-44d5-a76a-872cb44c2dc0 . RALGAPA2 NM_020343 exon38 c.5540_5541insCTGTATCTCGAAGCAATAATTCAGAACC p.H1847fs . . 89.0 11.0 74.0 0.0 . 274 . 0.124 . none . . PASS Pindel