Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
MT-CYB	0	genome.wustl.edu	36	MT	14767	14767	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	18257c7e-ce2a-4dce-8bc0-db47ca8201a4	07284d3f-346f-473f-864e-5be1a95560ff	MT	14767	14767	T	C	SNP	MT-CYB	ENST00000361789	human	ensembl	54_36p	+1	known	missense	c.20	p.I7T	NULL	superfamily_Transmembr_di-haem_cytochrome	HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C,superfamily_Transmembr_di-haem_cytochrome	-	no_stop_codon:bad_bp_length_for_coding_region	1696	44	2.53	2088	498	19.04	NA	NA	NA
TBX15	0	genome.wustl.edu	36	1	119270684	119270684	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	18257c7e-ce2a-4dce-8bc0-db47ca8201a4	07284d3f-346f-473f-864e-5be1a95560ff	1	119270684	119270684	T	A	SNP	TBX15	NM_152380.2	human	genbank	54_36p	-1	validated	missense	c.175	p.I59F	1.000	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors	468	7	1.47	120	54	30.68	NA	NA	NA
TCHHL1	0	genome.wustl.edu	36	1	150324146	150324146	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	18257c7e-ce2a-4dce-8bc0-db47ca8201a4	07284d3f-346f-473f-864e-5be1a95560ff	1	150324146	150324146	T	C	SNP	TCHHL1	NM_001008536.1	human	genbank	54_36p	-1	provisional	missense	c.2636	p.Q879R	0.075	NULL	PatternScan_S100_CABP,HMMPfam_S_100,superfamily_SSF47473	-	no_errors	743	4	0.54	142	78	35.14	NA	NA	NA
DNMT3A	0	genome.wustl.edu	36	2	25310747	25310747	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	18257c7e-ce2a-4dce-8bc0-db47ca8201a4	07284d3f-346f-473f-864e-5be1a95560ff	2	25310747	25310747	G	A	SNP	DNMT3A	NM_022552.3	human	genbank	54_36p	-1	reviewed	missense	c.2644	p.R882C	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors	152	0	0.00	42	17	28.33	NA	NA	NA
IDH1	0	genome.wustl.edu	36	2	208821357	208821357	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	18257c7e-ce2a-4dce-8bc0-db47ca8201a4	07284d3f-346f-473f-864e-5be1a95560ff	2	208821357	208821357	C	T	SNP	IDH1	NM_005896.2	human	genbank	54_36p	-1	reviewed	missense	c.395	p.R132H	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	71	0	0.00	55	39	41.05	NA	NA	NA
GRM7	0	genome.wustl.edu	36	3	7478316	7478316	+	Silent	SNP	T	T	A			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	18257c7e-ce2a-4dce-8bc0-db47ca8201a4	07284d3f-346f-473f-864e-5be1a95560ff	3	7478316	7478316	T	A	SNP	GRM7	NM_181874.2	human	genbank	54_36p	+1	reviewed	silent	c.1422	p.P474	0.995	HMMPfam_ANF_receptor,superfamily_SSF53822	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822	-	no_errors	672	10	1.46	155	52	24.88	NA	NA	NA
ANKRD30A	0	genome.wustl.edu	36	10	37495588	37495588	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	18257c7e-ce2a-4dce-8bc0-db47ca8201a4	07284d3f-346f-473f-864e-5be1a95560ff	10	37495588	37495588	C	T	SNP	ANKRD30A	NM_052997.2	human	genbank	54_36p	+1	validated	missense	c.1946	p.A649V	0.010	NULL	PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors	69	0	0.00	25	19	42.22	NA	NA	NA
KRT74	0	genome.wustl.edu	36	12	51250815	51250815	+	Silent	SNP	G	G	A			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	18257c7e-ce2a-4dce-8bc0-db47ca8201a4	07284d3f-346f-473f-864e-5be1a95560ff	12	51250815	51250815	G	A	SNP	KRT74	NM_175053.3	human	genbank	54_36p	-1	validated	silent	c.913	p.L305	0.958	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors	249	4	1.58	60	23	27.71	NA	NA	NA
PTPN11	0	genome.wustl.edu	36	12	111372548	111372548	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	18257c7e-ce2a-4dce-8bc0-db47ca8201a4	07284d3f-346f-473f-864e-5be1a95560ff	12	111372548	111372548	G	A	SNP	PTPN11	NM_002834.3	human	genbank	54_36p	+1	reviewed	missense	c.181	p.D61N	1.000	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_SH2 domain	-	no_errors	423	0	0.00	51	23	31.08	NA	NA	NA
EP400	0	genome.wustl.edu	36	12	131032838	131032838	+	Silent	SNP	G	G	A			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	18257c7e-ce2a-4dce-8bc0-db47ca8201a4	07284d3f-346f-473f-864e-5be1a95560ff	12	131032838	131032838	G	A	SNP	EP400	NM_015409.3	human	genbank	54_36p	+1	validated	silent	c.1788	p.Q596	0.985	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_HSA,superfamily_Homeodomain_like,HMMSmart_HSA,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors	209	1	0.48	44	23	34.33	NA	NA	NA
LOC728211	0	genome.wustl.edu	36	18	12066175	12066175	+	RNA	SNP	A	A	G			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	18257c7e-ce2a-4dce-8bc0-db47ca8201a4	07284d3f-346f-473f-864e-5be1a95560ff	18	12066175	12066175	A	G	SNP	LOC728211	XR_015403.2	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.973	-	-	-	pseudogene	127	2	1.55	18	7	26.92	NA	NA	NA
C20orf24	0	genome.wustl.edu	36	20	34673853	34673853	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	18257c7e-ce2a-4dce-8bc0-db47ca8201a4	07284d3f-346f-473f-864e-5be1a95560ff	20	34673853	34673853	C	T	SNP	C20orf24	NM_199483.2	human	genbank	54_36p	+1	validated	missense	c.245	p.P82L	0.994	HMMPfam_Rab5ip	HMMPfam_Rab5ip	-	no_errors	375	3	0.79	32	17	34.00	NA	NA	NA
MT-ND5	0	genome.wustl.edu	36	MT	13059	13059	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	C	C	C	-	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	18257c7e-ce2a-4dce-8bc0-db47ca8201a4	07284d3f-346f-473f-864e-5be1a95560ff	MT	13059	13059	C	-	DEL	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	frame_shift_del	c.722	p.P242fs	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors	623	4	0.64	682	193	21.33	NA	NA	NA
NPM1	0	genome.wustl.edu	36	5	170767341	170767342	+	Frame_Shift_Ins	INS	-	-	GAGGAGG			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	-	-	-	GAGGAGG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	18257c7e-ce2a-4dce-8bc0-db47ca8201a4	07284d3f-346f-473f-864e-5be1a95560ff	5	170767341	170767342	-	GAGGAGG	INS	NPM1	NM_002520.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.804_805	p.I268fs	0.998:1.000	NULL	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
NPM1	0	genome.wustl.edu	36	5	170767342	170767343	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AB-2802-03B-01W-0728-08	TCGA-AB-2802-11B-01W-0728-08	-	-	-	T	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	18257c7e-ce2a-4dce-8bc0-db47ca8201a4	07284d3f-346f-473f-864e-5be1a95560ff	5	170767342	170767343	-	T	INS	NPM1	NM_002520.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.805_806	p.N270fs	1.000:1.000	NULL	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors	163	0	0.00	49	0	0.00	NA	NA	NA