Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
MT-CO1	0	genome.wustl.edu	36	MT	7207	7207	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	MT	7207	7207	G	A	SNP	MT-CO1	ENST00000361624	human	ensembl	54_36p	+1	known	nonsense	c.1303	p.G435*	NULL	HMMPfam_COX1,superfamily_Cytochrome^^_^^c^^_^^oxidase^^_^^subunit^^_^^I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome^^_^^c^^_^^oxidase^^_^^subunit^^_^^I-like	-	no_stop_codon	1385	1	0.07	3582	968	21.12	NA	NA	NA
CACNA1S	0	genome.wustl.edu	36	1	199321250	199321250	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	1	199321250	199321250	G	A	SNP	CACNA1S	NM_000069.2	human	genbank	54_36p	-1	reviewed	missense	c.1087	p.L363F	1.000	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_SSF81324	-	no_errors	90	0	0.00	107	61	36.09	NA	NA	NA
LMOD1	0	genome.wustl.edu	36	1	200181928	200181928	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	1	200181928	200181928	G	A	SNP	LMOD1	ENST00000367288	human	ensembl	54_36p	-1	known	missense	c.164	p.T55M	1.000	HMMPfam_Tropomodulin	HMMPfam_WH2,HMMPfam_Tropomodulin,superfamily_SSF52047	-	no_errors	94	0	0.00	99	78	43.58	NA	NA	NA
RPL32	0	genome.wustl.edu	36	3	12855994	12855994	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	3	12855994	12855994	C	A	SNP	RPL32	NM_000994.3	human	genbank	54_36p	-1	reviewed	missense	c.132	p.R44S	1.000	HMMPfam_Ribosomal_L32e,superfamily_Ribosomal protein L32e	HMMPfam_Ribosomal_L32e,superfamily_Ribosomal protein L32e,PatternScan_RIBOSOMAL_L32E	-	no_errors	84	0	0.00	64	56	46.28	1244	1394	52.68
CC2D2A	0	genome.wustl.edu	36	4	15178450	15178450	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	4	15178450	15178450	C	T	SNP	CC2D2A	NM_001080522.2	human	genbank	54_36p	+1	validated	missense	c.3341	p.T1114M	0.971	HMMSmart_C2	HMMSmart_C2	-	no_errors	123	0	0.00	102	68	39.53	NA	NA	NA
LNX1	0	genome.wustl.edu	36	4	54069006	54069006	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	4	54069006	54069006	C	T	SNP	LNX1	NM_032622.1	human	genbank	54_36p	-1	reviewed	missense	c.238	p.E80K	0.988	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	-	no_errors	89	2	2.17	97	95	49.22	NA	NA	NA
FNIP2	0	genome.wustl.edu	36	4	159974210	159974210	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	4	159974210	159974210	G	A	SNP	FNIP2	NM_020840.1	human	genbank	54_36p	+1	validated	missense	c.635	p.C212Y	0.998	NULL	NULL	-	no_errors	186	0	0.00	145	87	36.86	2	1	33.33
POU5F1	0	genome.wustl.edu	36	6	31240983	31240983	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	6	31240983	31240983	G	T	SNP	POU5F1	NM_002701.4	human	genbank	54_36p	-1	validated	missense	c.717	p.N239K	0.995	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	HMMPfam_Pou,HMMSmart_SM00352,PatternScan_POU_1,PatternScan_POU_2,HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1	-	no_errors	191	0	0.00	136	106	43.44	1	3	75.00
POM121C	0	genome.wustl.edu	36	7	74889409	74889409	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	7	74889409	74889409	C	G	SNP	POM121C	NM_001099415.1	human	genbank	54_36p	-1	validated	missense	c.2062	p.G688R	0.135	NULL	NULL	-	no_errors	7	0	0.00	9	1	10.00	13	0	0.00
TAS2R38	0	genome.wustl.edu	36	7	141319023	141319023	+	Silent	SNP	C	C	G			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	7	141319023	141319023	C	G	SNP	TAS2R38	NM_176817.3	human	genbank	54_36p	-1	validated	silent	c.936	p.L312	0.001	HMMPfam_TAS2R,superfamily_SSF81321	HMMPfam_TAS2R,superfamily_SSF81321	-	no_errors	74	0	0.00	81	61	42.07	NA	NA	NA
C7orf29	0	genome.wustl.edu	36	7	149658979	149658979	+	Silent	SNP	C	C	T			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	7	149658979	149658979	C	T	SNP	C7orf29	NM_138434.2	human	genbank	54_36p	+1	validated	silent	c.553	p.L185	0.015	NULL	NULL	-	no_errors	23	0	0.00	44	18	29.03	1	0	0.00
LOC100133234	0	genome.wustl.edu	36	8	56529203	56529203	+	RNA	SNP	A	A	G			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	8	56529203	56529203	A	G	SNP	LOC100133234	XR_038021.1	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.803	-	-	-	pseudogene	25	0	0.00	28	12	30.00	NA	NA	NA
TRIM48	0	genome.wustl.edu	36	11	54789725	54789725	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	11	54789725	54789725	C	A	SNP	TRIM48	NM_024114.3	human	genbank	54_36p	+1	validated	missense	c.485	p.T162N	0.000	NULL	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors	24	0	0.00	44	26	37.14	NA	NA	NA
TUBA1A	0	genome.wustl.edu	36	12	47865247	47865247	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	12	47865247	47865247	C	T	SNP	TUBA1A	NM_006009.2	human	genbank	54_36p	-1	reviewed	missense	c.1169	p.R390H	1.000	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like	-	no_errors	98	0	0.00	148	43	22.40	167	34	16.92
RYR3	0	genome.wustl.edu	36	15	31835807	31835807	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	15	31835807	31835807	G	A	SNP	RYR3	NM_001036.3	human	genbank	54_36p	+1	validated	missense	c.8524	p.V2842I	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors	122	0	0.00	107	70	39.55	NA	NA	NA
FSD2	0	genome.wustl.edu	36	15	81252794	81252794	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	15	81252794	81252794	C	T	SNP	FSD2	NM_001007122.2	human	genbank	54_36p	-1	provisional	missense	c.403	p.G135R	0.000	NULL	HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	-	no_errors	75	0	0.00	68	70	50.72	NA	NA	NA
PEX13	0	genome.wustl.edu	36	2	61112441	61112441	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G	G	-	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	2	61112441	61112441	G	-	DEL	PEX13	NM_002618.3	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.476	p.A160fs	1.000	HMMPfam_Peroxin-13_N	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Peroxin-13_N	-	no_errors	158	0	0.00	113	93	43.46	3	0	0.00
LOC643342	0	genome.wustl.edu	36	9	97095390	97095391	+	RNA	DEL	TG	TG	-			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	TG	TG	TG	-	TG	TG	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	b32f55af-f22a-4a37-a9f6-753d1b1eb72d	7cf1ee32-4453-4377-af5e-7d9ac9f8d43b	9	97095390	97095391	TG	-	DEL	LOC643342	XR_016301.2	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.996:0.998	-	-	-	pseudogene	0	0	0.00	0	15	14.29	0	0	0.00