Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
KDM6A	0	genome.wustl.edu	36	X	44803458	44803458	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	X	44803458	44803458	C	A	SNP	UTX	NM_021140.2	human	genbank	54_36p	+1	validated	missense	c.997	p.Q333K	1.000	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452	HMMPfam_TPR_1,HMMSmart_JmjC,HMMPfam_JmjC,HMMSmart_TPR,superfamily_SSF48452	-	no_errors	26	0	0.00	7	89	92.71	2	40	95.24
OR13H1	0	genome.wustl.edu	36	X	130506620	130506620	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	X	130506620	130506620	C	T	SNP	OR13H1	NM_001004486.1	human	genbank	54_36p	+1	provisional	missense	c.892	p.R298W	0.967	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	52	0	0.00	25	167	84.34	0	2	100.00
CROCC	0	genome.wustl.edu	36	1	17147969	17147969	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	1	17147969	17147969	G	A	SNP	CROCC	NM_014675.3	human	genbank	54_36p	+1	validated	missense	c.2797	p.E933K	0.870	NULL	superfamily_Prefoldin	-	no_errors	32	0	0.00	39	11	22.00	13	0	0.00
ZNF687	0	genome.wustl.edu	36	1	149527051	149527051	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	1	149527051	149527051	C	T	SNP	ZNF687	NM_020832.1	human	genbank	54_36p	+1	provisional	missense	c.1660	p.R554C	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	27	0	0.00	42	30	41.10	22	17	43.59
NRXN1	0	genome.wustl.edu	36	2	50611899	50611899	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	2	50611899	50611899	C	T	SNP	NRXN1	NM_004801.1	human	genbank	54_36p	-1	reviewed	missense	c.2317	p.A773T	0.977	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin	-	no_errors	30	0	0.00	119	88	42.31	NA	NA	NA
LOC642635	0	genome.wustl.edu	36	2	153985650	153985650	+	RNA	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	2	153985650	153985650	C	T	SNP	LOC642635	XR_016188.2	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene	33	1	2.94	109	107	48.64	NA	NA	NA
HCN1	0	genome.wustl.edu	36	5	45297941	45297941	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	5	45297941	45297941	G	T	SNP	HCN1	NM_021072.2	human	genbank	54_36p	-1	validated	missense	c.2512	p.R838S	1.000	NULL	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,HMMPfam_Ion_trans_N,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324	-	no_errors	9	0	0.00	27	24	47.06	NA	NA	NA
OPRM1	0	genome.wustl.edu	36	6	154452709	154452709	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	6	154452709	154452709	G	T	SNP	OPRM1	NM_001008505.3	human	genbank	54_36p	+1	validated	missense	c.346	p.D116Y	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	57	0	0.00	132	69	34.33	NA	NA	NA
SCRIB	0	genome.wustl.edu	36	8	144963727	144963727	+	Silent	SNP	G	G	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	8	144963727	144963727	G	C	SNP	SCRIB	NM_182706.3	human	genbank	54_36p	-1	validated	silent	c.1680	p.A560	0.044	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_RNI-like	-	no_errors	21	0	0.00	22	8	26.67	25	9	26.47
C9orf78	0	genome.wustl.edu	36	9	131630321	131630321	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	9	131630321	131630321	G	C	SNP	C9orf78	NM_016520.2	human	genbank	54_36p	-1	validated	missense	c.810	p.N270K	0.973	NULL	HMMPfam_Hep_59	-	no_errors	25	0	0.00	86	70	44.59	55	43	43.88
KIAA1217	0	genome.wustl.edu	36	10	24802598	24802598	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	10	24802598	24802598	G	A	SNP	KIAA1217	NM_019590.1	human	genbank	54_36p	+1	validated	missense	c.1282	p.A428T	0.889	NULL	NULL	-	no_errors	47	0	0.00	132	76	36.36	1	3	75.00
PLCE1	0	genome.wustl.edu	36	10	95781181	95781181	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	10	95781181	95781181	G	T	SNP	PLCE1	NM_016341.3	human	genbank	54_36p	+1	validated	missense	c.388	p.A130S	0.089	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RA,HMMSmart_SM00314,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand	-	no_errors	56	0	0.00	143	94	39.00	NA	NA	NA
OR4B1	0	genome.wustl.edu	36	11	48195044	48195044	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	11	48195044	48195044	C	T	SNP	OR4B1	NM_001005470.1	human	genbank	54_36p	+1	provisional	missense	c.107	p.T36M	0.008	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	90	0	0.00	236	176	42.51	NA	NA	NA
KDM2B	0	genome.wustl.edu	36	12	120364769	120364769	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	12	120364769	120364769	T	C	SNP	FBXL10	NM_032590.1	human	genbank	54_36p	-1	reviewed	missense	c.2858	p.E953G	1.000	NULL	HMMPfam_F-box,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00558,HMMSmart_SM00367,superfamily_FYVE/PHD zinc finger,HMMPfam_JmjC,superfamily_Clavaminate synthase-like,superfamily_RNI-like	-	no_errors	15	0	0.00	30	17	35.42	29	16	35.56
SMEK1	0	genome.wustl.edu	36	14	91006957	91006957	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	14	91006957	91006957	G	C	SNP	SMEK1	NM_032560.4	human	genbank	54_36p	-1	validated	missense	c.1598	p.S533W	1.000	superfamily_ARM-type_fold	HMMPfam_DUF625,superfamily_ARM-type_fold,superfamily_SSF50729	-	no_errors	42	0	0.00	139	90	39.30	80	66	44.90
NPC1	0	genome.wustl.edu	36	18	19369601	19369601	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	18	19369601	19369601	C	T	SNP	NPC1	NM_000271.3	human	genbank	54_36p	-1	validated	missense	c.3307	p.G1103S	0.899	HMMPfam_Patched,superfamily_SSF82866	HMMPfam_Patched,superfamily_SSF82866	-	no_errors	32	0	0.00	83	61	42.07	12	5	29.41
HKR1	0	genome.wustl.edu	36	19	42546341	42546341	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	19	42546341	42546341	G	A	SNP	HKR1	NM_181786.2	human	genbank	54_36p	+1	provisional	missense	c.1804	p.A602T	0.993	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	14	0	0.00	63	48	42.48	17	22	55.00
FBXO11	0	genome.wustl.edu	36	2	47890258	47890259	+	Frame_Shift_Ins	INS	-	-	GA			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	-	-	-	GA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	2	47890258	47890259	-	GA	INS	FBXO11	NM_025133.1	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.2179_2178	p.N726fs	1.000:1.000	HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like,superfamily_SSF81383	HMMPfam_F-box,HMMSmart_FBOX,HMMPfam_zf-UBR,HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like,superfamily_SSF81383	-	no_errors	42	0	0.00	156	91	36.84	39	14	26.42
GIGYF2	0	genome.wustl.edu	36	2	233389923	233389924	+	Frame_Shift_Ins	INS	-	-	CGGTAGGACGGGTC			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	-	-	-	CGGTAGGACGGGTC	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1db034eb-18af-4980-bd4a-b93b15bc07a2	18fd295f-1daf-4ceb-9bf8-6b42bf8f56eb	2	233389923	233389924	-	CGGTAGGACGGGTC	INS	GIGYF2	NM_001103147.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.2370_2371	p.R791fs	0.997:0.997	NULL	HMMPfam_GYF,HMMSmart_GYF,superfamily_GYF	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA