Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
LOC100128989	0	genome.wustl.edu	36	X	74674244	74674244	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	X	74674244	74674244	T	G	SNP	LOC100128989	XM_001716779.1	human	genbank	54_36p	-1	model	missense	c.366	p.K122N	0.999	NULL	NULL	-	no_start_codon	424	2	0.47	293	166	36.17	NA	NA	NA
NXF3	0	genome.wustl.edu	36	X	102222197	102222197	+	Splice_Site	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	X	102222197	102222197	C	T	SNP	NXF3	NM_022052.1	human	genbank	54_36p	-1	reviewed	splice_site	c.891-1	e10-1	0.376	-	-	-	no_errors	340	0	0.00	107	70	39.55	NA	NA	NA
CTTNBP2NL	0	genome.wustl.edu	36	1	112798626	112798626	+	Silent	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	1	112798626	112798626	G	A	SNP	CTTNBP2NL	NM_018704.2	human	genbank	54_36p	+1	validated	silent	c.363	p.R121	1.000	HMMPfam_CortBP2	HMMPfam_CortBP2	-	no_errors	360	9	2.44	91	74	44.85	2	1	33.33
TBC1D8	0	genome.wustl.edu	36	2	101010296	101010296	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	2	101010296	101010296	T	G	SNP	TBC1D8	NM_001102426.1	human	genbank	54_36p	-1	validated	missense	c.2456	p.E819A	1.000	superfamily_EF-hand	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_EF-hand	-	no_errors	205	3	1.44	103	97	48.50	13	13	50.00
CCDC150	0	genome.wustl.edu	36	2	197302357	197302357	+	Splice_Site	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	2	197302357	197302357	G	A	SNP	CCDC150	NM_001080539.1	human	genbank	54_36p	+1	provisional	splice_site	c.2751+1	e23+1	0.997	-	-	-	no_errors	345	3	0.86	284	210	42.51	NA	NA	NA
uc002vdl.1	0	genome.wustl.edu	36	2	210491539	210491539	+	Silent	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	2	210491539	210491539	G	A	SNP	uc002vdl.1	ENST00000272845	human	ensembl	54_36p	+1	known	silent	c.2577	p.P859	0.915	NULL	NULL	-	no_start_codon	243	0	0.00	227	237	51.08	NA	NA	NA
ODZ3	0	genome.wustl.edu	36	4	183901404	183901404	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	4	183901404	183901404	G	A	SNP	ODZ3	NM_001080477.1	human	genbank	54_36p	+1	provisional	missense	c.3467	p.R1156H	1.000	superfamily_ConA_like_lec_gl	HMMPfam_NHL,HMMSmart_EGF,HMMPfam_RHS_repeat,superfamily_CarboxypepD_reg,superfamily_ConA_like_lec_gl,HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196,superfamily_SSF63829	-	no_errors	166	0	0.00	126	119	48.57	NA	NA	NA
ZNF311	0	genome.wustl.edu	36	6	29071725	29071725	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	6	29071725	29071725	G	A	SNP	ZNF311	NM_001010877.2	human	genbank	54_36p	-1	provisional	missense	c.1033	p.R345C	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	575	3	0.52	179	183	50.55	2	4	66.67
AKAP12	0	genome.wustl.edu	36	6	151715435	151715435	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	6	151715435	151715435	G	A	SNP	AKAP12	NM_005100.3	human	genbank	54_36p	+1	reviewed	missense	c.4216	p.V1406I	0.000	NULL	HMMPfam_WSK,HMMPfam_RII_binding_1	-	no_errors	223	1	0.45	233	205	46.80	NA	NA	NA
LPA	0	genome.wustl.edu	36	6	160918157	160918157	+	Splice_Site	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	6	160918157	160918157	C	T	SNP	LPA	NM_005577.2	human	genbank	54_36p	-1	validated	splice_site	c.4631+1	e28+1	1.000	-	-	-	no_errors	154	0	0.00	325	217	40.04	NA	NA	NA
POM121L12	0	genome.wustl.edu	36	7	53071334	53071334	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	7	53071334	53071334	G	A	SNP	DKFZp564N2472	NM_182595.2	human	genbank	54_36p	+1	validated	missense	c.476	p.R159H	0.001	NULL	NULL	-	no_errors	12	0	0.00	16	7	30.43	NA	NA	NA
PCLO	0	genome.wustl.edu	36	7	82376253	82376253	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	7	82376253	82376253	C	T	SNP	PCLO	NM_033026.2	human	genbank	54_36p	-1	validated	missense	c.13313	p.R4438H	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_zf-piccolo,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors	97	2	2.02	182	122	40.13	NA	NA	NA
FLNC	0	genome.wustl.edu	36	7	128267950	128267950	+	Silent	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	7	128267950	128267950	C	T	SNP	FLNC	NM_001458.1	human	genbank	54_36p	+1	reviewed	silent	c.1662	p.Y554	0.972	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin	HMMSmart_SM00557,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,superfamily_E set domains,superfamily_Calponin-homology domain CH-domain,HMMPfam_Filamin	-	no_errors	1521	59	3.73	97	88	47.57	NA	NA	NA
GPR124	0	genome.wustl.edu	36	8	37816921	37816921	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	8	37816921	37816921	C	T	SNP	GPR124	NM_032777.7	human	genbank	54_36p	+1	validated	missense	c.2615	p.P872L	0.875	NULL	HMMPfam_GPS,HMMSmart_SM00082,HMMPfam_LRR_1,HMMPfam_HRM,HMMSmart_SM00369,HMMSmart_SM00409,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_L domain-like	-	no_errors	185	0	0.00	96	35	26.72	3	1	25.00
P2RY2	0	genome.wustl.edu	36	11	72623927	72623927	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	11	72623927	72623927	T	C	SNP	P2RY2	NM_002564.2	human	genbank	54_36p	+1	reviewed	missense	c.1075	p.S359P	0.000	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors	1258	48	3.67	84	86	50.59	5	0	0.00
LOC100129218	0	genome.wustl.edu	36	12	51196813	51196813	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	12	51196813	51196813	G	T	SNP	LOC100129218	XM_001718439.1	human	genbank	54_36p	+1	model	missense	c.1642	p.G548C	1.000	NULL	NULL	-	no_errors	216	7	3.14	118	112	48.70	0	2	100.00
GCN1L1	0	genome.wustl.edu	36	12	119056525	119056525	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	12	119056525	119056525	G	A	SNP	GCN1L1	NM_006836.1	human	genbank	54_36p	-1	validated	missense	c.7270	p.R2424W	1.000	HMMPfam_HEAT,superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors	118	1	0.84	83	75	47.47	39	34	46.58
DCLK1	0	genome.wustl.edu	36	13	35343426	35343426	+	Missense_Mutation	SNP	C	C	T	rs56185003		TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	13	35343426	35343426	C	T	SNP	DCLK1	NM_004734.3	human	genbank	54_36p	-1	validated	missense	c.875	p.R292H	1.000	NULL	HMMSmart_S_TKc,HMMPfam_DCX,HMMSmart_DCX,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF89837	-	no_errors	368	5	1.34	251	248	49.60	NA	NA	NA
TYRO3	0	genome.wustl.edu	36	15	39642181	39642181	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	15	39642181	39642181	C	T	SNP	TYRO3	NM_006293.2	human	genbank	54_36p	+1	provisional	missense	c.553	p.P185S	0.035	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	574	0	0.00	54	55	50.46	NA	NA	NA
FAM154B	0	genome.wustl.edu	36	15	80361550	80361550	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	15	80361550	80361550	C	T	SNP	FAM154B	NM_001008226.1	human	genbank	54_36p	+1	predicted	missense	c.289	p.L97F	0.864	NULL	NULL	-	no_errors	132	0	0.00	119	104	46.64	NA	NA	NA
ALPK3	0	genome.wustl.edu	36	15	83202326	83202326	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	15	83202326	83202326	C	T	SNP	ALPK3	NM_020778.4	human	genbank	54_36p	+1	validated	missense	c.3959	p.A1320V	0.000	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors	47	1	2.08	56	50	46.73	1	0	0.00
IDH2	0	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T	rs121913502		TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	15	88432938	88432938	C	T	SNP	IDH2	NM_002168.2	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	153	1	0.65	97	82	45.81	160	132	45.05
CAMKK1	0	genome.wustl.edu	36	17	3732306	3732306	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	17	3732306	3732306	G	A	SNP	CAMKK1	NM_172207.2	human	genbank	54_36p	-1	reviewed	missense	c.793	p.R265C	0.001	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors	293	3	1.01	74	49	39.84	4	2	33.33
USP6	0	genome.wustl.edu	36	17	5005548	5005548	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	17	5005548	5005548	G	A	SNP	USP6	NM_004505.2	human	genbank	54_36p	+1	validated	missense	c.2830	p.D944N	1.000	HMMPfam_UCH,superfamily_Cysteine proteinases	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors	359	1	0.28	291	218	42.83	NA	NA	NA
LINC00324	0	genome.wustl.edu	36	17	8066613	8066613	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	17	8066613	8066613	T	C	SNP	C17orf44	ENST00000315707	human	ensembl	54_36p	-1	known	missense	c.316	p.I106V	0.000	NULL	NULL	-	no_errors	216	0	0.00	160	162	50.15	1	0	0.00
KRT20	0	genome.wustl.edu	36	17	36294725	36294725	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	17	36294725	36294725	C	T	SNP	KRT20	NM_019010.1	human	genbank	54_36p	-1	reviewed	missense	c.239	p.R80H	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors	278	1	0.36	258	41	13.71	NA	NA	NA
MIR142	0	genome.wustl.edu	36	17	53763624	53763624	+	RNA	SNP	T	T	C			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	17	53763624	53763624	T	C	SNP	MIRN142	ENST00000384835	human	ensembl	54_36p	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	291	0	0.00	77	50	39.37	25	26	50.98
LAMA1	0	genome.wustl.edu	36	18	7026046	7026046	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	18	7026046	7026046	G	T	SNP	LAMA1	NM_005559.2	human	genbank	54_36p	-1	validated	nonsense	c.1779	p.Y593*	0.990	HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00281	HMMPfam_Laminin_B,HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00281,superfamily_EGF/Laminin	-	no_errors	378	14	3.57	140	110	44.00	NA	NA	NA
LOC728205	0	genome.wustl.edu	36	18	59315520	59315520	+	RNA	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	18	59315520	59315520	G	A	SNP	LOC728205	XR_015404.1	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene	141	3	2.07	155	153	49.51	NA	NA	NA
POLR2E	0	genome.wustl.edu	36	19	1041936	1041936	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	19	1041936	1041936	C	A	SNP	POLR2E	NM_002695.3	human	genbank	54_36p	-1	reviewed	nonsense	c.400	p.E134*	1.000	superfamily_RNA_pol_Rpb5_N	HMMPfam_RNA_pol_Rpb5_C,PatternScan_RNA_POL_H_23KD,superfamily_RNApol_RPB5_like,HMMPfam_RNA_pol_Rpb5_N,superfamily_RNA_pol_Rpb5_N	-	no_errors	32	0	0.00	16	10	38.46	34	7	17.07
C20orf26	0	genome.wustl.edu	36	20	20027446	20027446	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	20	20027446	20027446	C	T	SNP	C20orf26	NM_015585.2	human	genbank	54_36p	+1	predicted	nonsense	c.847	p.R283*	0.000	NULL	superfamily_Acyl-CoA N-acyltransferases (Nat),superfamily_FAD/NAD(P)-binding domain	-	no_errors	914	2	0.22	255	229	47.31	NA	NA	NA
OSBP2	0	genome.wustl.edu	36	22	29596557	29596557	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	22	29596557	29596557	G	C	SNP	OSBP2	NM_030758.3	human	genbank	54_36p	+1	reviewed	missense	c.995	p.R332P	1.000	NULL	HMMPfam_Oxysterol_BP,HMMPfam_PH,HMMSmart_SM00233,PatternScan_OSBP,superfamily_PH domain-like	-	no_errors	44	1	2.22	22	19	46.34	0	2	100.00
C22orf42	0	genome.wustl.edu	36	22	30885094	30885094	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	22	30885094	30885094	C	A	SNP	C22orf42	NM_001010859.1	human	genbank	54_36p	-1	provisional	missense	c.109	p.A37S	0.000	NULL	NULL	-	no_errors	370	1	0.27	131	138	51.30	NA	NA	NA
ASXL1	0	genome.wustl.edu	36	20	30486388	30486388	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G	G	-	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	20	30486388	30486388	G	-	DEL	ASXL1	NM_015338.4	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.2212	p.G738fs	0.000	NULL	NULL	-	no_errors	65	4	5.80	61	62	50.41	28	23	45.10
RUNX1	0	genome.wustl.edu	36	21	35174726	35174731	+	In_Frame_Del	DEL	CTTCCA	CTTCCA	-			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	CTTCCA	CTTCCA	CTTCCA	-	CTTCCA	CTTCCA	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	3d15bdda-bbb7-4e3d-bdd6-7546d2905e95	b5c93c1e-585d-4cf8-a2b8-bd1b9eb4994c	21	35174726	35174731	CTTCCA	-	DEL	RUNX1	NM_001754.2	human	genbank	54_36p	-1	reviewed	in_frame_del	c.506_501	p.SG167in_frame_del	1.000:1.000:1.000:1.000:1.000:0.990	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA