Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
GJA4	0	genome.wustl.edu	36	1	35033304	35033304	+	Silent	SNP	G	G	A			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	06038210-fb82-4e20-8c82-d6695453eecb	92b4a800-c7d2-4f97-94fc-85d30528c574	1	35033304	35033304	G	A	SNP	GJA4	NM_002060.2	human	genbank	54_36p	+1	reviewed	silent	c.903	p.A301	0.012	NULL	HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1,PatternScan_CONNEXINS_2,HMMPfam_Connexin_CCC	-	no_errors	43	1	2.27	37	42	53.16	NA	NA	NA
CSF3R	0	genome.wustl.edu	36	1	36706021	36706021	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	06038210-fb82-4e20-8c82-d6695453eecb	92b4a800-c7d2-4f97-94fc-85d30528c574	1	36706021	36706021	G	A	SNP	CSF3R	NM_156039.2	human	genbank	54_36p	-1	reviewed	missense	c.1853	p.T618I	0.989	superfamily_FN_III-like	PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_Lep_receptor_Ig	-	no_errors	61	0	0.00	184	39	17.33	250	95	27.54
NRAS	0	genome.wustl.edu	36	1	115060267	115060267	+	Missense_Mutation	SNP	C	C	T	rs121434596		TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	06038210-fb82-4e20-8c82-d6695453eecb	92b4a800-c7d2-4f97-94fc-85d30528c574	1	115060267	115060267	C	T	SNP	NRAS	NM_002524.3	human	genbank	54_36p	-1	reviewed	missense	c.38	p.G13D	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	74	0	0.00	153	31	16.85	26	5	16.13
TSPAN2	0	genome.wustl.edu	36	1	115397524	115397524	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	06038210-fb82-4e20-8c82-d6695453eecb	92b4a800-c7d2-4f97-94fc-85d30528c574	1	115397524	115397524	G	A	SNP	TSPAN2	NM_005725.3	human	genbank	54_36p	-1	reviewed	missense	c.599	p.T200M	1.000	HMMPfam_Tetraspannin	superfamily_Tetraspanin,HMMPfam_Tetraspannin,PatternScan_TM4_1	-	no_errors	63	4	5.97	215	120	35.61	21	2	8.70
CTNNA2	0	genome.wustl.edu	36	2	79938770	79938770	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	06038210-fb82-4e20-8c82-d6695453eecb	92b4a800-c7d2-4f97-94fc-85d30528c574	2	79938770	79938770	C	T	SNP	CTNNA2	NM_004389.2	human	genbank	54_36p	+1	validated	missense	c.422	p.A141V	0.999	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	PatternScan_VINCULIN_1,HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors	41	3	6.82	44	51	53.68	NA	NA	NA
FILIP1	0	genome.wustl.edu	36	6	76079603	76079603	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	06038210-fb82-4e20-8c82-d6695453eecb	92b4a800-c7d2-4f97-94fc-85d30528c574	6	76079603	76079603	G	A	SNP	FILIP1	NM_015687.2	human	genbank	54_36p	-1	validated	nonsense	c.2665	p.R889*	0.294	NULL	HMMPfam_CortBP2	-	no_errors	106	7	6.19	139	124	47.15	NA	NA	NA
SOGA3	0	genome.wustl.edu	36	6	127838631	127838631	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	06038210-fb82-4e20-8c82-d6695453eecb	92b4a800-c7d2-4f97-94fc-85d30528c574	6	127838631	127838631	G	T	SNP	C6orf174	NM_001012279.1	human	genbank	54_36p	-1	validated	missense	c.2233	p.R745S	1.000	NULL	NULL	-	no_errors	10	0	0.00	15	16	51.61	NA	NA	NA
CSMD3	0	genome.wustl.edu	36	8	113720223	113720223	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	06038210-fb82-4e20-8c82-d6695453eecb	92b4a800-c7d2-4f97-94fc-85d30528c574	8	113720223	113720223	C	T	SNP	CSMD3	NM_198123.2	human	genbank	54_36p	-1	validated	missense	c.3404	p.R1135H	1.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors	74	4	5.13	95	51	34.23	NA	NA	NA
LOC121296	0	genome.wustl.edu	36	12	125915679	125915679	+	RNA	SNP	G	G	A			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	06038210-fb82-4e20-8c82-d6695453eecb	92b4a800-c7d2-4f97-94fc-85d30528c574	12	125915679	125915679	G	A	SNP	LOC121296	XR_016630.1	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors	60	0	0.00	112	17	12.88	NA	NA	NA
LAMA3	0	genome.wustl.edu	36	18	19648425	19648425	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	06038210-fb82-4e20-8c82-d6695453eecb	92b4a800-c7d2-4f97-94fc-85d30528c574	18	19648425	19648425	T	C	SNP	LAMA3	NM_198129.3	human	genbank	54_36p	+1	reviewed	missense	c.1849	p.Y617H	0.977	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_EGF/Laminin	HMMPfam_Laminin_B,HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00281,PatternScan_CHAPERONINS_CPN60,superfamily_EGF/Laminin	-	no_errors	53	3	5.36	101	96	48.24	NA	NA	NA
CEBPA	0	genome.wustl.edu	36	19	38484208	38484209	+	In_Frame_Ins	INS	-	-	TCA			TCGA-AB-2808-03D-01W-0755-09	TCGA-AB-2808-11D-01W-0755-09	-	-	-	TCA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	06038210-fb82-4e20-8c82-d6695453eecb	92b4a800-c7d2-4f97-94fc-85d30528c574	19	38484208	38484209	-	TCA	INS	CEBPA	NM_004364.3	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.953_952	p.318in_frame_insM	0.992:0.993	HMMSmart_BRLZ,HMMPfam_bZIP_2	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors	1	0	0.00	16	12	42.86	73	34	31.78