Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
CFLAR	0	genome.wustl.edu	36	2	201703073	201703073	+	Silent	SNP	G	G	A			TCGA-AB-2812-03B-01W-0728-08	TCGA-AB-2812-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	e899a08c-13e5-4d91-8493-a97be4a59463	88f03d43-a9a5-464e-90d5-59a3033e1e8c	2	201703073	201703073	G	A	SNP	CFLAR	NM_003879.1	human	genbank	54_36p	+1	validated	silent	c.240	p.E80	0.938	NULL	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain,HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like	-	no_errors	51	3	5.56	98	73	42.44	62	74	54.41
PPP1R3A	0	genome.wustl.edu	36	7	113307023	113307023	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2812-03B-01W-0728-08	TCGA-AB-2812-11B-01W-0728-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	e899a08c-13e5-4d91-8493-a97be4a59463	88f03d43-a9a5-464e-90d5-59a3033e1e8c	7	113307023	113307023	G	T	SNP	PPP1R3A	NM_002711.3	human	genbank	54_36p	-1	reviewed	missense	c.1360	p.P454T	0.001	NULL	HMMPfam_CBM_21	-	no_errors	59	4	6.35	123	134	51.74	NA	NA	NA
NHLRC2	0	genome.wustl.edu	36	10	115654646	115654646	+	Silent	SNP	T	T	C			TCGA-AB-2812-03B-01W-0728-08	TCGA-AB-2812-11B-01W-0728-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	e899a08c-13e5-4d91-8493-a97be4a59463	88f03d43-a9a5-464e-90d5-59a3033e1e8c	10	115654646	115654646	T	C	SNP	NHLRC2	NM_198514.2	human	genbank	54_36p	+1	provisional	silent	c.1785	p.P595	0.999	NULL	HMMPfam_NHL,superfamily_Thioredoxin-like,superfamily_NHL repeat	-	no_errors	53	5	8.62	136	108	43.90	15	3	16.67
CNTN5	0	genome.wustl.edu	36	11	99717125	99717125	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2812-03B-01W-0728-08	TCGA-AB-2812-11B-01W-0728-08	A	A	A	C	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	e899a08c-13e5-4d91-8493-a97be4a59463	88f03d43-a9a5-464e-90d5-59a3033e1e8c	11	99717125	99717125	A	C	SNP	CNTN5	NM_014361.2	human	genbank	54_36p	+1	reviewed	missense	c.3008	p.E1003A	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors	88	5	5.38	211	151	41.14	NA	NA	NA
GXYLT1	0	genome.wustl.edu	36	12	40799117	40799117	+	Silent	SNP	T	T	C			TCGA-AB-2812-03B-01W-0728-08	TCGA-AB-2812-11B-01W-0728-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	e899a08c-13e5-4d91-8493-a97be4a59463	88f03d43-a9a5-464e-90d5-59a3033e1e8c	12	40799117	40799117	T	C	SNP	GLT8D3	NM_173601.1	human	genbank	54_36p	-1	validated	silent	c.438	p.Q146	0.647	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors	68	1	1.45	174	106	37.32	10	6	37.50
FKBP11	0	genome.wustl.edu	36	12	47602220	47602220	+	Silent	SNP	C	C	A			TCGA-AB-2812-03B-01W-0728-08	TCGA-AB-2812-11B-01W-0728-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	e899a08c-13e5-4d91-8493-a97be4a59463	88f03d43-a9a5-464e-90d5-59a3033e1e8c	12	47602220	47602220	C	A	SNP	FKBP11	NM_016594.1	human	genbank	54_36p	-1	validated	silent	c.420	p.L140	0.997	HMMPfam_FKBP_C,superfamily_SSF54534	HMMPfam_FKBP_C,superfamily_SSF54534	-	no_errors	79	1	1.23	166	140	45.45	22	10	31.25
PARP4	0	genome.wustl.edu	36	13	23956867	23956867	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2812-03B-01W-0728-08	TCGA-AB-2812-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	e899a08c-13e5-4d91-8493-a97be4a59463	88f03d43-a9a5-464e-90d5-59a3033e1e8c	13	23956867	23956867	C	T	SNP	PARP4	NM_006437.3	human	genbank	54_36p	-1	reviewed	missense	c.1372	p.V458I	0.975	HMMPfam_PARP,superfamily_SSF56399	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT,HMMPfam_VWA,HMMSmart_VWA,superfamily_PARP_reg,HMMSmart_VIT,HMMPfam_PARP,HMMPfam_VIT,superfamily_SSF53300,superfamily_SSF56399	-	no_errors	52	0	0.00	159	30	15.62	103	0	0.00
SLC12A3	0	genome.wustl.edu	36	16	55484452	55484452	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2812-03B-01W-0728-08	TCGA-AB-2812-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	e899a08c-13e5-4d91-8493-a97be4a59463	88f03d43-a9a5-464e-90d5-59a3033e1e8c	16	55484452	55484452	C	T	SNP	SLC12A3	NM_000339.2	human	genbank	54_36p	+1	reviewed	missense	c.2533	p.L845F	0.999	NULL	HMMPfam_AA_permease,HMMPfam_AA_permease_N	-	no_errors	30	0	0.00	112	103	47.47	NA	NA	NA
TNNC2	0	genome.wustl.edu	36	20	43886574	43886574	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2812-03B-01W-0728-08	TCGA-AB-2812-11B-01W-0728-08	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	e899a08c-13e5-4d91-8493-a97be4a59463	88f03d43-a9a5-464e-90d5-59a3033e1e8c	20	43886574	43886574	G	T	SNP	TNNC2	NM_003279.2	human	genbank	54_36p	-1	reviewed	missense	c.166	p.L56M	1.000	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors	50	6	10.71	120	107	46.93	1	0	0.00
NPM1	0	genome.wustl.edu	36	5	170770150	170770151	+	Frame_Shift_Ins	INS	-	-	TGCA			TCGA-AB-2812-03B-01W-0728-08	TCGA-AB-2812-11B-01W-0728-08	-	-	-	TGCA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	e899a08c-13e5-4d91-8493-a97be4a59463	88f03d43-a9a5-464e-90d5-59a3033e1e8c	5	170770150	170770151	-	TGCA	INS	NPM1	NM_002520.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.861_862	p.W287fs	1.000:1.000	NULL	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
FLT3	0	genome.wustl.edu	36	13	27506256	27506257	+	In_Frame_Ins	INS	-	-	TCATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAG			TCGA-AB-2812-03B-01W-0728-08	TCGA-AB-2812-11B-01W-0728-08	-	-	-	TCATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	e899a08c-13e5-4d91-8493-a97be4a59463	88f03d43-a9a5-464e-90d5-59a3033e1e8c	13	27506256	27506257	-	TCATATTCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAG	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1800_1799	p.601in_frame_insSSDNEYFYVDFREYEYD	0.998:1.000	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA