Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
ENSG00000211459	0	genome.wustl.edu	36	MT	1311	1311	+	RNA	SNP	A	A	G			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	MT	1311	1311	A	G	SNP	ENSG00000211459	ENST00000389680	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	1448	12	0.82	2481	2728	52.22	NA	NA	NA
MT-ND1	0	genome.wustl.edu	36	MT	3434	3434	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	MT	3434	3434	T	C	SNP	MT-ND1	ENST00000361390	human	ensembl	54_36p	+1	known	missense	c.127	p.Y43H	NULL	HMMPfam_NADHdh	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_errors	888	7	0.78	3097	1726	35.73	NA	NA	NA
MT-ND4	0	genome.wustl.edu	36	MT	10493	10493	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	MT	10493	10493	T	C	SNP	MT-ND4	ENST00000361335	human	ensembl	54_36p	+1	known	missense	c.23	p.I8T	NULL	HMMPfam_Oxidored_q2	HMMPfam_Oxidored_q2	-	no_errors	1004	6	0.59	2833	2041	41.85	NA	NA	NA
MT-ND5	0	genome.wustl.edu	36	MT	13116	13116	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	MT	13116	13116	T	C	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	missense	c.779	p.L260P	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors	691	1	0.14	1999	1156	36.59	NA	NA	NA
FAM5C	0	genome.wustl.edu	36	1	188334484	188334484	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	1	188334484	188334484	G	A	SNP	FAM5C	NM_199051.1	human	genbank	54_36p	-1	provisional	missense	c.1588	p.R530C	1.000	NULL	HMMPfam_MACPF,HMMSmart_SM00457	-	no_errors	29	0	0.00	90	62	40.79	NA	NA	NA
TRNT1	0	genome.wustl.edu	36	3	3164779	3164779	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	3	3164779	3164779	A	G	SNP	TRNT1	NM_182916.2	human	genbank	54_36p	+1	validated	missense	c.1246	p.K416E	1.000	superfamily_Poly A polymerase C-terminal region-like	HMMPfam_PolyA_pol,superfamily_Nucleotidyltransferase,superfamily_Poly A polymerase C-terminal region-like	-	no_errors	27	0	0.00	75	62	45.26	16	11	40.74
ZNF502	0	genome.wustl.edu	36	3	44738612	44738612	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	A	A	A	T	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	3	44738612	44738612	A	T	SNP	ZNF502	NM_033210.1	human	genbank	54_36p	+1	validated	missense	c.1299	p.K433N	1.000	superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors	153	1	0.64	63	47	42.73	NA	NA	NA
GALNT7	0	genome.wustl.edu	36	4	174456015	174456015	+	Silent	SNP	A	A	G			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	4	174456015	174456015	A	G	SNP	GALNT7	NM_017423.2	human	genbank	54_36p	+1	reviewed	silent	c.1140	p.E380	1.000	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors	42	0	0.00	67	60	47.24	25	18	41.86
CMYA5	0	genome.wustl.edu	36	5	79070167	79070167	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	5	79070167	79070167	C	T	SNP	CMYA5	NM_153610.3	human	genbank	54_36p	+1	validated	missense	c.9823	p.P3275S	0.515	NULL	HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	-	no_errors	73	0	0.00	149	129	46.40	NA	NA	NA
GPR6	0	genome.wustl.edu	36	6	110407561	110407561	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	6	110407561	110407561	G	A	SNP	GPR6	NM_005284.3	human	genbank	54_36p	+1	validated	missense	c.553	p.V185M	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	35	0	0.00	44	43	49.43	NA	NA	NA
FAM115A	0	genome.wustl.edu	36	7	143204057	143204057	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	7	143204057	143204057	A	G	SNP	FAM115A	NM_014719.1	human	genbank	54_36p	-1	predicted	missense	c.578	p.F193S	0.934	NULL	NULL	-	no_errors	62	0	0.00	13	88	87.13	2	4	66.67
CYP26A1	0	genome.wustl.edu	36	10	94825672	94825672	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	10	94825672	94825672	G	A	SNP	CYP26A1	NM_000783.3	human	genbank	54_36p	+1	reviewed	missense	c.964	p.V322I	0.887	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors	64	1	1.54	33	20	37.74	NA	NA	NA
AP3S2	0	genome.wustl.edu	36	15	88215721	88215721	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	15	88215721	88215721	T	C	SNP	AP3S2	NM_005829.4	human	genbank	54_36p	-1	validated	missense	c.335	p.H112R	1.000	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like	HMMPfam_Clat_adaptor_s,PatternScan_CLAT_ADAPTOR_S,superfamily_SNARE-like	-	no_errors	57	0	0.00	24	14	36.84	18	13	41.94
SSTR4	0	genome.wustl.edu	36	20	22964628	22964628	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	20	22964628	22964628	G	A	SNP	SSTR4	NM_001052.2	human	genbank	54_36p	+1	validated	missense	c.508	p.V170M	0.990	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	28	0	0.00	16	7	30.43	NA	NA	NA
EZH2	0	genome.wustl.edu	36	7	148135695	148135696	+	Frame_Shift_Ins	INS	-	-	ATGCA			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	-	-	-	ATGCA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	7	148135695	148135696	-	ATGCA	INS	EZH2	NM_004456.3	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.2232_2231	p.E745fs	0.985:1.000	NULL	HMMSmart_SANT,HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
EZH2	0	genome.wustl.edu	36	7	148135696	148135697	+	Frame_Shift_Ins	INS	-	-	ATGCA			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	-	-	-	ATGCA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	7	148135696	148135697	-	ATGCA	INS	EZH2	NM_004456.3	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.2231_2230	p.I744fs	1.000:1.000	NULL	HMMSmart_SANT,HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
CBFB	0	genome.wustl.edu	36	16	65673672	65673673	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2817-03B-01W-0728-08	TCGA-AB-2817-11B-01W-0728-08	-	-	-	A	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1c97470b-4715-470b-b0c7-9e4807b5fae4	800efb0e-942d-4afc-bdb3-454dc18c6c38	16	65673672	65673673	-	A	INS	CBFB	NM_022845.2	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.455_456	p.F153fs	1.000:1.000	HMMPfam_CBF_beta	HMMPfam_CBF_beta,superfamily_CBF_beta	-	no_errors	288	0	0.00	197	0	0.00	12	0	0.00