Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
LOC646346	0	genome.wustl.edu	36	X	26615585	26615585	+	RNA	SNP	G	G	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	X	26615585	26615585	G	A	SNP	LOC646346	XR_017105.2	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene	44	0	0.00	112	29	20.57	NA	NA	NA
KLHL12	0	genome.wustl.edu	36	1	201130363	201130363	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	1	201130363	201130363	T	G	SNP	KLHL12	NM_021633.2	human	genbank	54_36p	-1	provisional	missense	c.1273	p.S425R	1.000	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central	HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB	-	no_errors	27	0	0.00	56	59	51.30	3	2	40.00
DNMT3A	0	genome.wustl.edu	36	2	25313378	25313378	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	2	25313378	25313378	C	G	SNP	DNMT3A	NM_022552.3	human	genbank	54_36p	-1	reviewed	missense	c.2409	p.R803S	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors	24	1	4.00	24	14	36.84	16	5	23.81
TRPM8	0	genome.wustl.edu	36	2	234510743	234510743	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	2	234510743	234510743	G	A	SNP	TRPM8	NM_024080.4	human	genbank	54_36p	+1	validated	missense	c.199	p.V67M	0.006	NULL	HMMPfam_Ion_trans	-	no_errors	28	0	0.00	65	63	49.22	NA	NA	NA
MAPK9	0	genome.wustl.edu	36	5	179608667	179608667	+	Silent	SNP	C	C	T			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	5	179608667	179608667	C	T	SNP	MAPK9	NM_002752.1	human	genbank	54_36p	-1	reviewed	silent	c.528	p.A176	0.606	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	-	no_errors	22	0	0.00	45	49	52.13	22	26	54.17
MEA1	0	genome.wustl.edu	36	6	43089041	43089041	+	Silent	SNP	G	G	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	6	43089041	43089041	G	A	SNP	MEA1	NM_014623.2	human	genbank	54_36p	-1	validated	silent	c.93	p.P31	0.997	HMMPfam_MEA1	HMMPfam_MEA1	-	no_errors	125	0	0.00	73	55	42.64	16	6	26.09
FBXO30	0	genome.wustl.edu	36	6	146167649	146167649	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	6	146167649	146167649	C	T	SNP	FBXO30	NM_032145.4	human	genbank	54_36p	-1	reviewed	missense	c.1586	p.R529K	1.000	NULL	HMMPfam_F-box,HMMSmart_FBOX,superfamily_Traf_like,superfamily_SSF81383	-	no_errors	54	1	1.79	97	80	45.20	16	6	27.27
PSD3	0	genome.wustl.edu	36	8	18769577	18769577	+	Silent	SNP	C	C	G			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	8	18769577	18769577	C	G	SNP	PSD3	NM_015310.3	human	genbank	54_36p	-1	validated	silent	c.1521	p.V507	0.111	NULL	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors	77	0	0.00	102	79	43.65	2	1	33.33
LOC646609	0	genome.wustl.edu	36	9	22738240	22738240	+	RNA	SNP	G	G	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	9	22738240	22738240	G	A	SNP	LOC646609	XR_037907.1	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.042	-	-	-	pseudogene	31	0	0.00	77	74	48.68	NA	NA	NA
C5	0	genome.wustl.edu	36	9	122764816	122764816	+	Silent	SNP	C	C	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	9	122764816	122764816	C	A	SNP	C5	NM_001735.2	human	genbank	54_36p	-1	reviewed	silent	c.4458	p.G1486	0.995	HMMPfam_A2M_recep,superfamily_AM_receptor_bind	HMMPfam_ANATO,HMMSmart_ANATO,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terp_cyc_toroid,HMMPfam_A2M_recep,superfamily_AM_receptor_bind,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,superfamily_Anaphylatoxin,HMMPfam_NTR,HMMSmart_C345C,PatternScan_ALPHA_2_MACROGLOBULIN	-	no_errors	54	1	1.82	82	57	41.01	4	6	60.00
PIPSL	0	genome.wustl.edu	36	10	95710248	95710248	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	10	95710248	95710248	C	G	SNP	PIPSL	ENST00000340582	human	ensembl	54_36p	-1	known	missense	c.896	p.R299T	0.156	HMMPfam_PIP5K,HMMSmart_PIPKc,superfamily_SSF56104	HMMSmart_VWA,HMMPfam_PIP5K,HMMPfam_UIM,HMMSmart_PIPKc,superfamily_SSF53300,superfamily_SSF56104	-	no_errors	31	0	0.00	59	51	45.95	34	0	0.00
HPS5	0	genome.wustl.edu	36	11	18271034	18271034	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	11	18271034	18271034	G	A	SNP	HPS5	NM_181507.3	human	genbank	54_36p	-1	reviewed	missense	c.1850	p.T617I	1.000	NULL	superfamily_WD40 repeat-like	-	no_errors	30	0	0.00	81	65	44.52	11	8	42.11
FLT3	0	genome.wustl.edu	36	13	27490642	27490642	+	Missense_Mutation	SNP	C	C	A	rs121913488		TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	13	27490642	27490642	C	A	SNP	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	missense	c.2503	p.D835Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	41	0	0.00	71	57	44.53	141	104	42.45
LOC647211	0	genome.wustl.edu	36	16	33332554	33332554	+	RNA	SNP	G	G	A			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	16	33332554	33332554	G	A	SNP	LOC647211	XR_017499.2	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.001	-	-	-	pseudogene	153	0	0.00	330	46	12.23	NA	NA	NA
NPM1	0	genome.wustl.edu	36	5	170770148	170770149	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	-	-	-	TCTG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	5	170770148	170770149	-	TCTG	INS	NPM1	NM_002520.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.859_860	p.W288fs	1.000:1.000	NULL	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
RAD21	0	genome.wustl.edu	36	8	117944678	117944679	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AB-2818-03B-01W-0728-08	TCGA-AB-2818-11B-01W-0728-08	-	-	-	C	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	84ca77c7-0799-4e5c-bed8-034e78b899f0	4bbe86bc-4b1c-43fc-a949-4599c083d8e4	8	117944678	117944679	-	C	INS	RAD21	NM_006265.2	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.146_145	p.V49fs	1.000:1.000	HMMPfam_Rad21_Rec8_N	HMMPfam_Rad21_Rec8,HMMPfam_Rad21_Rec8_N	-	no_errors	33	0	0.00	86	77	47.24	11	0	0.00