Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
GALNT2	0	genome.wustl.edu	36	1	228481673	228481673	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	A	A	A	C	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56d41ca3-78f9-4a0d-801c-1ecf4f1be249	e031e4fa-53fd-4e94-8459-7effb8460789	1	228481673	228481673	A	C	SNP	GALNT2	NM_004481.3	human	genbank	54_36p	+1	reviewed	missense	c.1562	p.K521T	1.000	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors	36	2	5.26	91	61	39.87	48	35	42.17
MFSD6	0	genome.wustl.edu	36	2	191009228	191009228	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56d41ca3-78f9-4a0d-801c-1ecf4f1be249	e031e4fa-53fd-4e94-8459-7effb8460789	2	191009228	191009228	T	G	SNP	MFSD6	NM_017694.3	human	genbank	54_36p	+1	validated	missense	c.228	p.F76L	1.000	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors	99	0	0.00	161	101	38.40	25	29	52.73
IDH1	0	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A	rs121913499		TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56d41ca3-78f9-4a0d-801c-1ecf4f1be249	e031e4fa-53fd-4e94-8459-7effb8460789	2	208821358	208821358	G	A	SNP	IDH1	NM_005896.2	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	33	0	0.00	93	55	36.67	81	42	34.15
ATG16L1	0	genome.wustl.edu	36	2	233866685	233866685	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56d41ca3-78f9-4a0d-801c-1ecf4f1be249	e031e4fa-53fd-4e94-8459-7effb8460789	2	233866685	233866685	T	A	SNP	ATG16L1	NM_030803.3	human	genbank	54_36p	+1	validated	missense	c.1673	p.L558Q	0.994	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_ATG16,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors	262	0	0.00	483	280	36.46	23	10	30.30
BOD1L	0	genome.wustl.edu	36	4	13224941	13224941	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56d41ca3-78f9-4a0d-801c-1ecf4f1be249	e031e4fa-53fd-4e94-8459-7effb8460789	4	13224941	13224941	T	C	SNP	BOD1L	NM_148894.2	human	genbank	54_36p	-1	validated	missense	c.1151	p.K384R	0.002	superfamily_SSF81995	HMMPfam_AT_hook,HMMSmart_AT_hook,superfamily_SSF81995	-	no_errors	74	0	0.00	154	90	36.59	30	37	55.22
FAT2	0	genome.wustl.edu	36	5	150909157	150909157	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56d41ca3-78f9-4a0d-801c-1ecf4f1be249	e031e4fa-53fd-4e94-8459-7effb8460789	5	150909157	150909157	C	T	SNP	FAT2	NM_001447.2	human	genbank	54_36p	-1	reviewed	missense	c.4681	p.E1561K	1.000	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,superfamily_EGF/Laminin	-	no_errors	27	0	0.00	91	73	44.51	NA	NA	NA
SYNGAP1	0	genome.wustl.edu	36	6	33517365	33517365	+	Silent	SNP	C	C	T			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56d41ca3-78f9-4a0d-801c-1ecf4f1be249	e031e4fa-53fd-4e94-8459-7effb8460789	6	33517365	33517365	C	T	SNP	SYNGAP1	NM_006772.2	human	genbank	54_36p	+1	validated	silent	c.2100	p.P700	0.996	HMMSmart_SM00323,superfamily_GTPase activation domain GAP	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00233,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_PH domain-like	-	no_errors	257	1	0.39	201	121	37.12	19	26	57.78
RUNX1T1	0	genome.wustl.edu	36	8	93096001	93096001	+	Silent	SNP	G	G	A			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56d41ca3-78f9-4a0d-801c-1ecf4f1be249	e031e4fa-53fd-4e94-8459-7effb8460789	8	93096001	93096001	G	A	SNP	RUNX1T1	NM_175634.2	human	genbank	54_36p	-1	reviewed	silent	c.450	p.T150	0.845	HMMPfam_TAFH,HMMSmart_SM00549	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,HMMPfam_TAFH,HMMSmart_SM00549,HMMPfam_NHR2	-	no_errors	184	0	0.00	348	176	33.46	1	0	0.00
C10orf28	0	genome.wustl.edu	36	10	99958685	99958685	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56d41ca3-78f9-4a0d-801c-1ecf4f1be249	e031e4fa-53fd-4e94-8459-7effb8460789	10	99958685	99958685	G	A	SNP	C10orf28	NM_014472.4	human	genbank	54_36p	+1	validated	missense	c.824	p.G275D	0.015	NULL	NULL	-	no_errors	110	0	0.00	158	76	32.20	15	9	37.50
OR8H2	0	genome.wustl.edu	36	11	55629610	55629610	+	Silent	SNP	C	C	T			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56d41ca3-78f9-4a0d-801c-1ecf4f1be249	e031e4fa-53fd-4e94-8459-7effb8460789	11	55629610	55629610	C	T	SNP	OR8H2	NM_001005200.1	human	genbank	54_36p	+1	provisional	silent	c.516	p.N172	0.025	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	39	0	0.00	184	103	35.89	NA	NA	NA
NTRK3	0	genome.wustl.edu	36	15	86273475	86273475	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56d41ca3-78f9-4a0d-801c-1ecf4f1be249	e031e4fa-53fd-4e94-8459-7effb8460789	15	86273475	86273475	A	G	SNP	NTRK3	NM_001012338.1	human	genbank	54_36p	-1	reviewed	missense	c.2084	p.I695T	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMPfam_LRR_1,PatternScan_RECEPTOR_TYR_KIN_II,HMMSmart_SM00220,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors	128	0	0.00	163	92	35.38	NA	NA	NA
IDH2	0	genome.wustl.edu	36	15	88432842	88432842	+	Missense_Mutation	SNP	C	C	T	rs121913503		TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56d41ca3-78f9-4a0d-801c-1ecf4f1be249	e031e4fa-53fd-4e94-8459-7effb8460789	15	88432842	88432842	C	T	SNP	IDH2	NM_002168.2	human	genbank	54_36p	-1	reviewed	missense	c.515	p.R172K	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	40	0	0.00	144	18	11.11	169	21	11.05
ASXL1	0	genome.wustl.edu	36	20	30486373	30486373	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56d41ca3-78f9-4a0d-801c-1ecf4f1be249	e031e4fa-53fd-4e94-8459-7effb8460789	20	30486373	30486373	C	T	SNP	ASXL1	NM_015338.4	human	genbank	54_36p	+1	reviewed	nonsense	c.2197	p.Q733*	0.002	NULL	NULL	-	no_errors	8	0	0.00	105	44	28.95	47	35	42.68
U2AF1	0	genome.wustl.edu	36	21	43387846	43387846	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	T	T	T	G	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56d41ca3-78f9-4a0d-801c-1ecf4f1be249	e031e4fa-53fd-4e94-8459-7effb8460789	21	43387846	43387846	T	G	SNP	U2AF1	NM_001025203.1	human	genbank	54_36p	-1	reviewed	missense	c.470	p.Q157P	1.000	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF54928	-	no_errors	22	0	0.00	69	54	43.55	35	48	57.83
RUNX1	0	genome.wustl.edu	36	21	35174864	35174865	+	Frame_Shift_Ins	INS	-	-	CC			TCGA-AB-2821-03B-01W-0728-08	TCGA-AB-2821-11B-01W-0728-08	-	-	-	CC	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	56d41ca3-78f9-4a0d-801c-1ecf4f1be249	e031e4fa-53fd-4e94-8459-7effb8460789	21	35174864	35174865	-	CC	INS	RUNX1	NM_001754.2	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.368_367	p.D123fs	0.999:1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors	35	0	0.00	68	29	29.90	144	74	33.94