Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
EPHA10	0	genome.wustl.edu	36	1	38000163	38000163	+	Silent	SNP	G	G	A			TCGA-AB-2827-03B-01W-0728-08	TCGA-AB-2827-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1a21f77d-2ab7-4b5a-b91a-2f561a459dd1	bf713301-022e-480e-8c3a-5c04981f30de	1	38000163	38000163	G	A	SNP	EPHA10	NM_001099439.1	human	genbank	54_36p	-1	validated	silent	c.351	p.G117	0.531	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Galactose-binding domain-like,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),PatternScan_EGF_2	-	no_errors	187	2	1.06	52	8	13.11	NA	NA	NA
SELENBP1	0	genome.wustl.edu	36	1	149604327	149604327	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2827-03B-01W-0728-08	TCGA-AB-2827-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1a21f77d-2ab7-4b5a-b91a-2f561a459dd1	bf713301-022e-480e-8c3a-5c04981f30de	1	149604327	149604327	C	T	SNP	SELENBP1	NM_003944.2	human	genbank	54_36p	-1	reviewed	missense	c.1099	p.E367K	0.978	HMMPfam_SBP56,superfamily_Cyt_cd1_haem_C	HMMPfam_SBP56,superfamily_Cyt_cd1_haem_C	-	no_errors	16	1	5.88	113	94	44.98	NA	NA	NA
PPIC	0	genome.wustl.edu	36	5	122389416	122389416	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2827-03B-01W-0728-08	TCGA-AB-2827-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1a21f77d-2ab7-4b5a-b91a-2f561a459dd1	bf713301-022e-480e-8c3a-5c04981f30de	5	122389416	122389416	C	T	SNP	PPIC	NM_000943.4	human	genbank	54_36p	-1	reviewed	missense	c.472	p.G158S	1.000	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like	HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_Cyclophilin-like	-	no_errors	58	6	9.38	91	50	35.21	NA	NA	NA
ATXN7L1	0	genome.wustl.edu	36	7	105066182	105066182	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2827-03B-01W-0728-08	TCGA-AB-2827-11B-01W-0728-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1a21f77d-2ab7-4b5a-b91a-2f561a459dd1	bf713301-022e-480e-8c3a-5c04981f30de	7	105066182	105066182	C	G	SNP	ATXN7L1	ENST00000297416	human	ensembl	54_36p	-1	known	missense	c.1065	p.E355D	1.000	NULL	HMMPfam_SCA7	-	no_start_codon	21	0	0.00	99	81	44.75	NA	NA	NA
MYC	0	genome.wustl.edu	36	8	128819866	128819866	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2827-03B-01W-0728-08	TCGA-AB-2827-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1a21f77d-2ab7-4b5a-b91a-2f561a459dd1	bf713301-022e-480e-8c3a-5c04981f30de	8	128819866	128819866	C	T	SNP	MYC	NM_002467.3	human	genbank	54_36p	+1	reviewed	missense	c.221	p.P74L	1.000	HMMPfam_Myc_N	HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_Myc-LZ,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_Myc_N	-	no_errors	80	0	0.00	56	11	16.18	NA	NA	NA
KANK1	0	genome.wustl.edu	36	9	701981	701981	+	Silent	SNP	C	C	G			TCGA-AB-2827-03B-01W-0728-08	TCGA-AB-2827-11B-01W-0728-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1a21f77d-2ab7-4b5a-b91a-2f561a459dd1	bf713301-022e-480e-8c3a-5c04981f30de	9	701981	701981	C	G	SNP	KANK1	NM_015158.2	human	genbank	54_36p	+1	reviewed	silent	c.1215	p.A405	0.883	superfamily_ANK	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors	48	0	0.00	97	23	18.55	NA	NA	NA
TMCO3	0	genome.wustl.edu	36	13	113241795	113241795	+	Silent	SNP	C	C	T			TCGA-AB-2827-03B-01W-0728-08	TCGA-AB-2827-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1a21f77d-2ab7-4b5a-b91a-2f561a459dd1	bf713301-022e-480e-8c3a-5c04981f30de	13	113241795	113241795	C	T	SNP	TMCO3	NM_017905.4	human	genbank	54_36p	+1	validated	silent	c.1662	p.F554	0.996	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors	121	0	0.00	127	84	39.44	NA	NA	NA
SPESP1	0	genome.wustl.edu	36	15	67025715	67025715	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2827-03B-01W-0728-08	TCGA-AB-2827-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1a21f77d-2ab7-4b5a-b91a-2f561a459dd1	bf713301-022e-480e-8c3a-5c04981f30de	15	67025715	67025715	G	A	SNP	SPESP1	NM_145658.2	human	genbank	54_36p	+1	provisional	missense	c.788	p.R263Q	0.090	NULL	NULL	-	no_errors	6	0	0.00	134	34	20.00	NA	NA	NA
FAM65A	0	genome.wustl.edu	36	16	66131490	66131490	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2827-03B-01W-0728-08	TCGA-AB-2827-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1a21f77d-2ab7-4b5a-b91a-2f561a459dd1	bf713301-022e-480e-8c3a-5c04981f30de	16	66131490	66131490	C	T	SNP	FAM65A	NM_024519.2	human	genbank	54_36p	+1	validated	missense	c.448	p.R150W	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	99	7	6.60	192	170	46.45	NA	NA	NA
RNF157	0	genome.wustl.edu	36	17	71669646	71669646	+	Silent	SNP	G	G	A			TCGA-AB-2827-03B-01W-0728-08	TCGA-AB-2827-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1a21f77d-2ab7-4b5a-b91a-2f561a459dd1	bf713301-022e-480e-8c3a-5c04981f30de	17	71669646	71669646	G	A	SNP	RNF157	NM_052916.2	human	genbank	54_36p	-1	validated	silent	c.825	p.A275	0.627	superfamily_RING/U-box	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors	38	0	0.00	86	36	29.27	NA	NA	NA
USP36	0	genome.wustl.edu	36	17	74336626	74336626	+	Silent	SNP	G	G	A			TCGA-AB-2827-03B-01W-0728-08	TCGA-AB-2827-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1a21f77d-2ab7-4b5a-b91a-2f561a459dd1	bf713301-022e-480e-8c3a-5c04981f30de	17	74336626	74336626	G	A	SNP	USP36	NM_025090.3	human	genbank	54_36p	-1	validated	silent	c.534	p.F178	0.979	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,PatternScan_IG_MHC,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors	18	0	0.00	95	76	44.19	NA	NA	NA
TEX19	0	genome.wustl.edu	36	17	77913366	77913366	+	Silent	SNP	C	C	G			TCGA-AB-2827-03B-01W-0728-08	TCGA-AB-2827-11B-01W-0728-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1a21f77d-2ab7-4b5a-b91a-2f561a459dd1	bf713301-022e-480e-8c3a-5c04981f30de	17	77913366	77913366	C	G	SNP	FLJ35767	NM_207459.1	human	genbank	54_36p	+1	predicted	silent	c.51	p.L17	0.000	NULL	NULL	-	no_errors	61	1	1.61	14	6	30.00	NA	NA	NA
PLA2G4C	0	genome.wustl.edu	36	19	53299742	53299742	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2827-03B-01W-0728-08	TCGA-AB-2827-11B-01W-0728-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1a21f77d-2ab7-4b5a-b91a-2f561a459dd1	bf713301-022e-480e-8c3a-5c04981f30de	19	53299742	53299742	C	G	SNP	PLA2G4C	NM_003706.1	human	genbank	54_36p	-1	provisional	missense	c.172	p.A58P	0.980	HMMPfam_PLA2_B,HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase	HMMPfam_PLA2_B,HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase	-	no_errors	30	1	3.23	57	53	47.75	NA	NA	NA
MTMR3	0	genome.wustl.edu	36	22	28728934	28728934	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2827-03B-01W-0728-08	TCGA-AB-2827-11B-01W-0728-08	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1a21f77d-2ab7-4b5a-b91a-2f561a459dd1	bf713301-022e-480e-8c3a-5c04981f30de	22	28728934	28728934	G	C	SNP	MTMR3	NM_021090.3	human	genbank	54_36p	+1	reviewed	missense	c.623	p.S208T	1.000	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_FYVE,HMMSmart_SM00064,HMMSmart_SM00404,HMMPfam_Myotub-related,superfamily_FYVE/PHD zinc finger,PatternScan_TYR_PHOSPHATASE_1,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors	41	0	0.00	113	83	41.92	NA	NA	NA