Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
ARHGEF19	0	genome.wustl.edu	36	1	16398232	16398232	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2828-03C-01W-0761-09	TCGA-AB-2828-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10851212-f1e2-4d19-a72c-e5b76befbf4e	c216d8ed-38df-4961-96a7-0e8a9184a17d	1	16398232	16398232	C	T	SNP	ARHGEF19	NM_153213.3	human	genbank	54_36p	-1	provisional	missense	c.2251	p.G751S	0.999	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors	161	6	3.59	204	180	46.15	1	0	0.00
OR2M2	0	genome.wustl.edu	36	1	246410626	246410626	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2828-03C-01W-0761-09	TCGA-AB-2828-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10851212-f1e2-4d19-a72c-e5b76befbf4e	c216d8ed-38df-4961-96a7-0e8a9184a17d	1	246410626	246410626	C	T	SNP	OR2M2	NM_001004688.1	human	genbank	54_36p	+1	provisional	missense	c.716	p.T239M	0.002	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	53	3	5.36	93	95	50.00	NA	NA	NA
CAMKMT	0	genome.wustl.edu	36	2	44784945	44784945	+	Silent	SNP	G	G	A			TCGA-AB-2828-03C-01W-0761-09	TCGA-AB-2828-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10851212-f1e2-4d19-a72c-e5b76befbf4e	c216d8ed-38df-4961-96a7-0e8a9184a17d	2	44784945	44784945	G	A	SNP	C2orf34	NM_024766.3	human	genbank	54_36p	+1	validated	silent	c.396	p.E132	1.000	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors	119	9	7.03	112	89	44.06	4	1	20.00
DYSF	0	genome.wustl.edu	36	2	71650962	71650962	+	Silent	SNP	C	C	T			TCGA-AB-2828-03C-01W-0761-09	TCGA-AB-2828-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10851212-f1e2-4d19-a72c-e5b76befbf4e	c216d8ed-38df-4961-96a7-0e8a9184a17d	2	71650962	71650962	C	T	SNP	DYSF	NM_003494.1	human	genbank	54_36p	+1	reviewed	silent	c.3021	p.V1007	0.913	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00693,HMMSmart_SM00694,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerA,HMMPfam_FerB,HMMPfam_FerI	-	no_errors	51	0	0.00	135	31	18.56	43	9	17.31
PARP14	0	genome.wustl.edu	36	3	123902717	123902717	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2828-03C-01W-0761-09	TCGA-AB-2828-11B-01W-0728-08	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10851212-f1e2-4d19-a72c-e5b76befbf4e	c216d8ed-38df-4961-96a7-0e8a9184a17d	3	123902717	123902717	C	G	SNP	PARP14	NM_017554.2	human	genbank	54_36p	+1	validated	missense	c.2626	p.H876D	0.002	HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like	HMMPfam_Macro,HMMSmart_SM00506,HMMPfam_PARP,superfamily_Macro domain-like,superfamily_ADP-ribosylation	-	no_errors	58	2	3.33	82	85	50.60	22	21	48.84
SCARA3	0	genome.wustl.edu	36	8	27572859	27572859	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2828-03C-01W-0761-09	TCGA-AB-2828-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10851212-f1e2-4d19-a72c-e5b76befbf4e	c216d8ed-38df-4961-96a7-0e8a9184a17d	8	27572859	27572859	G	A	SNP	SCARA3	NM_016240.2	human	genbank	54_36p	+1	reviewed	missense	c.1253	p.S418N	0.997	NULL	HMMPfam_Collagen	-	no_errors	61	2	3.17	104	94	47.24	NA	NA	NA
MCM10	0	genome.wustl.edu	36	10	13274457	13274457	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2828-03C-01W-0761-09	TCGA-AB-2828-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10851212-f1e2-4d19-a72c-e5b76befbf4e	c216d8ed-38df-4961-96a7-0e8a9184a17d	10	13274457	13274457	G	A	SNP	MCM10	NM_182751.3	human	genbank	54_36p	+1	reviewed	missense	c.1631	p.G544E	0.733	HMMPfam_Mcm10	HMMPfam_zf-primase,HMMPfam_Mcm10	-	no_errors	64	5	7.25	82	55	39.86	12	14	51.85
ASUN	0	genome.wustl.edu	36	12	26957742	26957742	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2828-03C-01W-0761-09	TCGA-AB-2828-11B-01W-0728-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10851212-f1e2-4d19-a72c-e5b76befbf4e	c216d8ed-38df-4961-96a7-0e8a9184a17d	12	26957742	26957742	C	A	SNP	C12orf11	NM_018164.2	human	genbank	54_36p	-1	validated	nonsense	c.1720	p.G574*	1.000	HMMPfam_DUF2151	HMMPfam_DUF2151	-	no_errors	128	4	3.03	132	112	45.53	23	10	30.30
KRT2	0	genome.wustl.edu	36	12	51332071	51332071	+	Silent	SNP	G	G	A			TCGA-AB-2828-03C-01W-0761-09	TCGA-AB-2828-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10851212-f1e2-4d19-a72c-e5b76befbf4e	c216d8ed-38df-4961-96a7-0e8a9184a17d	12	51332071	51332071	G	A	SNP	KRT2	NM_000423.2	human	genbank	54_36p	-1	reviewed	silent	c.123	p.S41	1.000	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors	23	1	4.17	38	29	43.28	NA	NA	NA
SECISBP2L	0	genome.wustl.edu	36	15	47088804	47088804	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2828-03C-01W-0761-09	TCGA-AB-2828-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10851212-f1e2-4d19-a72c-e5b76befbf4e	c216d8ed-38df-4961-96a7-0e8a9184a17d	15	47088804	47088804	C	T	SNP	SECISBP2L	NM_014701.2	human	genbank	54_36p	-1	provisional	missense	c.1793	p.C598Y	1.000	NULL	HMMPfam_Ribosomal_L7Ae,superfamily_SSF55315	-	no_errors	178	8	4.30	178	164	47.95	18	19	51.35
LOC653657	0	genome.wustl.edu	36	19	7009587	7009587	+	Silent	SNP	C	C	T			TCGA-AB-2828-03C-01W-0761-09	TCGA-AB-2828-11B-01W-0728-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10851212-f1e2-4d19-a72c-e5b76befbf4e	c216d8ed-38df-4961-96a7-0e8a9184a17d	19	7009587	7009587	C	T	SNP	LOC653657	XM_928697.3	human	genbank	54_36p	-1	model	silent	c.30	p.P10	0.004	NULL	NULL	-	no_errors	17	0	0.00	11	6	35.29	NA	NA	NA
C19orf46	0	genome.wustl.edu	36	19	41189298	41189298	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2828-03C-01W-0761-09	TCGA-AB-2828-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10851212-f1e2-4d19-a72c-e5b76befbf4e	c216d8ed-38df-4961-96a7-0e8a9184a17d	19	41189298	41189298	G	A	SNP	C19orf46	NM_001039876.1	human	genbank	54_36p	-1	validated	missense	c.734	p.T245I	0.973	NULL	HMMPfam_KASH	-	no_errors	68	3	4.23	41	24	36.92	NA	NA	NA
FCGBP	0	genome.wustl.edu	36	19	45068786	45068786	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2828-03C-01W-0761-09	TCGA-AB-2828-11B-01W-0728-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	10851212-f1e2-4d19-a72c-e5b76befbf4e	c216d8ed-38df-4961-96a7-0e8a9184a17d	19	45068786	45068786	G	A	SNP	FCGBP	NM_003890.2	human	genbank	54_36p	-1	validated	missense	c.11476	p.P3826S	0.554	NULL	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors	23	0	0.00	29	3	9.38	3	1	25.00