Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
MYBPH	0	genome.wustl.edu	36	1	201406130	201406130	+	Silent	SNP	C	C	T			TCGA-AB-2847-03B-01W-0728-08	TCGA-AB-2847-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	38b6c99c-08a1-4341-8945-46c0e722e43f	2fa70aaf-e4b8-41f3-b226-521b4e259315	1	201406130	201406130	C	T	SNP	MYBPH	NM_004997.2	human	genbank	54_36p	-1	validated	silent	c.1005	p.S335	0.810	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726	-	no_errors	168	1	0.58	78	47	37.30	NA	NA	NA
ARF1	0	genome.wustl.edu	36	1	226351682	226351682	+	Silent	SNP	C	C	T			TCGA-AB-2847-03B-01W-0728-08	TCGA-AB-2847-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	38b6c99c-08a1-4341-8945-46c0e722e43f	2fa70aaf-e4b8-41f3-b226-521b4e259315	1	226351682	226351682	C	T	SNP	ARF1	NM_001024226.1	human	genbank	54_36p	+1	reviewed	silent	c.165	p.T55	0.940	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,PatternScan_ARF,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	38	0	0.00	57	30	33.71	208	190	47.74
LRP1B	0	genome.wustl.edu	36	2	141190758	141190758	+	Silent	SNP	C	C	T			TCGA-AB-2847-03B-01W-0728-08	TCGA-AB-2847-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	38b6c99c-08a1-4341-8945-46c0e722e43f	2fa70aaf-e4b8-41f3-b226-521b4e259315	2	141190758	141190758	C	T	SNP	LRP1B	NM_018557.2	human	genbank	54_36p	-1	validated	silent	c.5856	p.L1952	1.000	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMPfam_NHL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors	219	3	1.35	300	175	36.08	NA	NA	NA
CSRNP1	0	genome.wustl.edu	36	3	39161570	39161570	+	Silent	SNP	C	C	T			TCGA-AB-2847-03B-01W-0728-08	TCGA-AB-2847-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	38b6c99c-08a1-4341-8945-46c0e722e43f	2fa70aaf-e4b8-41f3-b226-521b4e259315	3	39161570	39161570	C	T	SNP	AXUD1	NM_033027.3	human	genbank	54_36p	-1	reviewed	silent	c.387	p.A129	0.036	NULL	NULL	-	no_errors	141	2	1.37	60	33	35.11	30	13	30.23
ADAMTS16	0	genome.wustl.edu	36	5	5292824	5292824	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2847-03B-01W-0728-08	TCGA-AB-2847-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	38b6c99c-08a1-4341-8945-46c0e722e43f	2fa70aaf-e4b8-41f3-b226-521b4e259315	5	5292824	5292824	G	A	SNP	ADAMTS16	NM_139056.2	human	genbank	54_36p	+1	reviewed	missense	c.2309	p.G770E	1.000	HMMPfam_ADAM_spacer1	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors	152	2	1.29	221	108	32.73	NA	NA	NA
SCAND3	0	genome.wustl.edu	36	6	28651673	28651673	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2847-03B-01W-0728-08	TCGA-AB-2847-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	38b6c99c-08a1-4341-8945-46c0e722e43f	2fa70aaf-e4b8-41f3-b226-521b4e259315	6	28651673	28651673	G	A	SNP	SCAND3	NM_052923.1	human	genbank	54_36p	-1	provisional	missense	c.788	p.A263V	0.948	NULL	HMMPfam_rve,HMMPfam_SCAN,HMMSmart_SCAN,HMMPfam_hATC,superfamily_RNaseH_fold	-	no_errors	143	0	0.00	116	65	34.76	NA	NA	NA
OR2AG1	0	genome.wustl.edu	36	11	6763236	6763236	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2847-03B-01W-0728-08	TCGA-AB-2847-11B-01W-0729-08	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	38b6c99c-08a1-4341-8945-46c0e722e43f	2fa70aaf-e4b8-41f3-b226-521b4e259315	11	6763236	6763236	C	A	SNP	OR2AG1	NM_001004489.1	human	genbank	54_36p	+1	provisional	missense	c.392	p.T131K	0.977	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors	188	0	0.00	160	82	33.20	NA	NA	NA
ACSM2A	0	genome.wustl.edu	36	16	20390039	20390039	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2847-03B-01W-0728-08	TCGA-AB-2847-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	38b6c99c-08a1-4341-8945-46c0e722e43f	2fa70aaf-e4b8-41f3-b226-521b4e259315	16	20390039	20390039	G	A	SNP	ACSM2A	NM_001010845.2	human	genbank	54_36p	+1	validated	missense	c.740	p.G247D	0.999	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like	-	no_errors	233	1	0.42	214	130	37.36	NA	NA	NA
SLC12A3	0	genome.wustl.edu	36	16	55491009	55491009	+	Silent	SNP	C	C	T			TCGA-AB-2847-03B-01W-0728-08	TCGA-AB-2847-11B-01W-0729-08	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	38b6c99c-08a1-4341-8945-46c0e722e43f	2fa70aaf-e4b8-41f3-b226-521b4e259315	16	55491009	55491009	C	T	SNP	SLC12A3	NM_000339.2	human	genbank	54_36p	+1	reviewed	silent	c.2727	p.N909	1.000	NULL	HMMPfam_AA_permease,HMMPfam_AA_permease_N	-	no_errors	316	3	0.93	164	72	30.38	2	0	0.00
U2AF1	0	genome.wustl.edu	36	21	43397525	43397525	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2847-03B-01W-0728-08	TCGA-AB-2847-11B-01W-0729-08	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	38b6c99c-08a1-4341-8945-46c0e722e43f	2fa70aaf-e4b8-41f3-b226-521b4e259315	21	43397525	43397525	G	A	SNP	U2AF1	NM_001025203.1	human	genbank	54_36p	-1	reviewed	missense	c.101	p.S34F	1.000	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF54928	-	no_errors	74	2	2.60	45	17	27.42	64	84	56.76
CRIPAK	0	genome.wustl.edu	36	4	1378345	1378346	+	Frame_Shift_Del	DEL	CA	CA	-	rs34051457		TCGA-AB-2847-03B-01W-0728-08	TCGA-AB-2847-11B-01W-0729-08	CA	CA	CA	-	CA	CA	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	38b6c99c-08a1-4341-8945-46c0e722e43f	2fa70aaf-e4b8-41f3-b226-521b4e259315	4	1378345	1378346	CA	-	DEL	CRIPAK	NM_175918.3	human	genbank	54_36p	+1	validated	frame_shift_del	c.46_47	p.T17fs	0.758:0.787	NULL	HMMSmart_PostSET	-	no_errors	0	0	0.00	0	5	12.50	0	0	0.00